Works by Wong, Stephen Q.

Results: 32

Health Economic Evidence and Modeling Challenges for Liquid Biopsy Assays in Cancer Management: A Systematic Literature Review.
Published in:
PharmacoEconomics, 2023, v. 41, n. 10, p. 1229, doi. 10.1007/s40273-023-01292-5
By:
- Fagery, Mussab;
- Khorshidi, Hadi A.;
- Wong, Stephen Q.;
- Vu, Martin;
- IJzerman, Maarten
Publication type:
Article
Clinical and pathological associations of the activating RAC1 P29S mutation in primary cutaneous melanoma.
Published in:
Pigment Cell & Melanoma Research, 2014, v. 27, n. 6, p. 1117, doi. 10.1111/pcmr.12295
By:
- Mar, Victoria J.;
- Wong, Stephen Q.;
- Logan, Aleksandra;
- Nguyen, Trung;
- Cebon, Jonathan;
- Kelly, John W.;
- Wolfe, Rory;
- Dobrovic, Alexander;
- McLean, Catriona;
- McArthur, Grant A.
Publication type:
Article
Unravelling mutational signatures with plasma circulating tumour DNA.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-54193-2
By:
- Hollizeck, Sebastian;
- Wang, Ning;
- Wong, Stephen Q.;
- Litchfield, Cassandra;
- Guinto, Jerick;
- Ftouni, Sarah;
- Rebello, Richard;
- Kanwal, Sehrish;
- Dong, Ruining;
- Grimmond, Sean;
- Sandhu, Shahneen;
- Mileshkin, Linda;
- Tothill, Richard W.;
- Chandrananda, Dineika;
- Dawson, Sarah-Jane
Publication type:
Article
Copy number analysis by low coverage whole genome sequencing using ultra low-input DNA from formalin-fixed paraffin embedded tumor tissue.
Published in:
Genome Medicine, 2016, v. 8, p. 1, doi. 10.1186/s13073-016-0375-z
By:
- Kader, Tanjina;
- Goode, David L.;
- Wong, Stephen Q.;
- Connaughton, Jacquie;
- Rowley, Simone M.;
- Devereux, Lisa;
- Byrne, David;
- Fox, Stephen B.;
- Arnau, Gisela Mir;
- Tothill, Richard W.;
- Campbell, Ian G.;
- Gorringe, Kylie L.
Publication type:
Article
Wet or Dry? Do Liquid Biopsy Techniques Compete with or Complement PET for Disease Monitoring in Oncology?
Published in:
Journal of Nuclear Medicine, 2017, v. 58, n. 6, p. 869, doi. 10.2967/jnumed.117.190116
By:
- Wong, Stephen Q.;
- Tothill, Richard W.;
- Dawson, Sarah-Jane;
- Hicks, Rodney J.
Publication type:
Article
Circulating tumour DNA in metastatic breast cancer to guide clinical trial enrolment and precision oncology: A cohort study.
Published in:
2020
By:
- Zivanovic Bujak, Andjelija;
- Weng, Chen-Fang;
- Silva, Maria João;
- Yeung, Miriam;
- Lo, Louisa;
- Ftouni, Sarah;
- Litchfield, Cassandra;
- Ko, Yi-An;
- Kuykhoven, Keilly;
- Van Geelen, Courtney;
- Chandrashekar, Sushma;
- Dawson, Mark A.;
- Loi, Sherene;
- Wong, Stephen Q.;
- Dawson, Sarah-Jane
Publication type:
journal article
Targeted-capture massively-parallel sequencing enables robust detection of clinically informative mutations from formalin-fixed tumours.
Published in:
Scientific Reports, 2013, p. 1, doi. 10.1038/srep03494
By:
- Wong, Stephen Q.;
- Li, Jason;
- Salemi, Renato;
- Sheppard, Karen E.;
- Hongdo Do;
- Tothill, Richard W.;
- McArthur, Grant A.;
- Dobrovic, Alexander
Publication type:
Article
Circulating tumour DNA reflects treatment response and clonal evolution in chronic lymphocytic leukaemia.
Published in:
Nature Communications, 2017, v. 8, n. 3, p. 14756, doi. 10.1038/ncomms14756
By:
- Yeh, Paul;
- Hunter, Tane;
- Sinha, Devbarna;
- Ftouni, Sarah;
- Wallach, Elise;
- Jiang, Damian;
- Chan, Yih-Chih;
- Wong, Stephen Q.;
- Silva, Maria Joao;
- Vedururu, Ravikiran;
- Doig, Kenneth;
- Lam, Enid;
- Arnau, Gisela Mir;
- Semple, Timothy;
- Wall, Meaghan;
- Zivanovic, Andjelija;
- Agarwal, Rishu;
- Petrone, Pasquale;
- Jones, Kate;
- Westerman, David
Publication type:
Article
Appraisal of the technologies and review of the genomic landscape of ductal carcinoma in situ of the breast.
Published in:
Breast Cancer Research, 2015, v. 17, n. 1, p. 1, doi. 10.1186/s13058-015-0586-z
By:
- Pang, Jia-Min B.;
- Gorringe, Kylie L.;
- Wong, Stephen Q.;
- Dobrovic, Alexander;
- Campbell, Ian G.;
- Fox, Stephen B.
Publication type:
Article
Appraisal of the technologies and review of the genomic landscape of ductal carcinoma in situ of the breast.
Published in:
2015
By:
- Pang, Jia-Min B;
- Gorringe, Kylie L;
- Wong, Stephen Q;
- Dobrovic, Alexander;
- Campbell, Ian G;
- Fox, Stephen B
Publication type:
journal article
Author Correction: Low-coverage whole-genome sequencing of extracellular vesicle-associated DNA in patients with metastatic cancer.
Published in:
2021
By:
- Nguyen, Bella;
- Wong, Nicholas C.;
- Semple, Tim;
- Clark, Michael;
- Wong, Stephen Q.;
- Leslie, Connull;
- Mirzai, Bob;
- Millward, Michael;
- Meehan, Katie;
- Lim, Annette M.
Publication type:
Correction Notice
Sequence artefacts in a prospective series of formalin-fixed tumours tested for mutations in hotspot regions by massively parallel sequencing.
Published in:
BMC Medical Genomics, 2014, v. 7, n. 1, p. 1, doi. 10.1186/1755-8794-7-23
By:
- Wong, Stephen Q.;
- Li, Jason;
- Tan, Angela Y-C.;
- Vedururu, Ravikiran;
- Pang, Jia-Min B.;
- Hongdo Do;
- Ellul, Jason;
- Doig, Ken;
- Bell, Anthony;
- MacArthur, Grant A.;
- Fox, Stephen B.;
- Thomas, David M.;
- Fellowes, Andrew;
- Parisot, John P.;
- Dobrovic, Alexander
Publication type:
Article
MethPat: a tool for the analysis and visualisation of complex methylation patterns obtained by massively parallel sequencing.
Published in:
BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-0950-8
By:
- Wong, Nicholas C.;
- Pope, Bernard J.;
- Candiloro, Ida L.;
- Korbie, Darren;
- Trau, Matt;
- Wong, Stephen Q.;
- Mikeska, Thomas;
- Xinmin Zhang;
- Pitman, Mark;
- Eggers, Stefanie;
- Doyle, Stephen R.;
- Dobrovic, Alexander
Publication type:
Article
Multiplexed transcriptome analysis to detect ALK, ROS1 and RET rearrangements in lung cancer.
Published in:
Scientific Reports, 2017, p. 42259, doi. 10.1038/srep42259
By:
- Rogers, Toni-Maree;
- Arnau, Gisela Mir;
- Ryland, Georgina L.;
- Huang, Stephen;
- Lira, Maruja E.;
- Emmanuel, Yvette;
- Perez, Omar D.;
- Irwin, Darryl;
- Fellowes, Andrew P.;
- Wong, Stephen Q.;
- Fox, Stephen B.
Publication type:
Article
Exemplary multiplex bisulfite amplicon data used to demonstrate the utility of Methpat.
Published in:
GigaScience, 2015, v. 4, p. 1, doi. 10.1186/s13742-015-0098-x
By:
- Wong, Nicholas C.;
- Pope, Bernard J.;
- Candiloro, Ida;
- Korbie, Darren;
- Trau, Matt;
- Wong, Stephen Q.;
- Mikeska, Thomas;
- van Denderen, Bryce J. W.;
- Thompson, Erik W.;
- Eggers, Stefanie;
- Doyle, Stephen R.;
- Dobrovic, Alexander
Publication type:
Article
Copy number architectures define treatment-mediated selection of lethal prostate cancer clones.
Published in:
Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-40315-9
By:
- Hasan, A. M. Mahedi;
- Cremaschi, Paolo;
- Wetterskog, Daniel;
- Jayaram, Anuradha;
- Wong, Stephen Q.;
- Williams, Scott;
- Pasam, Anupama;
- Trigos, Anna;
- Trujillo, Blanca;
- Grist, Emily;
- Friedrich, Stefanie;
- Vainauskas, Osvaldas;
- Parry, Marina;
- Ismail, Mazlina;
- Devlies, Wout;
- Wingate, Anna;
- Linch, Mark;
- Naceur-Lombardelli, Cristina;
- PEACE consortium;
- Zaccaria, Simone
Publication type:
Article
Detection of cell-free microbial DNA using a contaminant-controlled analysis framework.
Published in:
Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02401-3
By:
- Zozaya-Valdés, Enrique;
- Wong, Stephen Q.;
- Raleigh, Jeanette;
- Hatzimihalis, Athena;
- Ftouni, Sarah;
- Papenfuss, Anthony T.;
- Sandhu, Shahneen;
- Dawson, Mark A.;
- Dawson, Sarah-Jane
Publication type:
Article
A high-throughput protocol for mutation scanning of the BRCA1 and BRCA2 genes.
Published in:
BMC Cancer, 2011, v. 11, n. 1, p. 265, doi. 10.1186/1471-2407-11-265
By:
- Hondow, Heather L.;
- Fox, Stephen B.;
- Mitchell, Gillian;
- Scott, Rodney J.;
- Beshay, Victoria;
- Wong, Stephen Q.;
- Investigators, kConFab;
- Dobrovic, Alexander
Publication type:
Article
Genome-wide plasma DNA methylation features of metastatic prostate cancer.
Published in:
2020
By:
- Anjui Wu;
- Cremaschi, Paolo;
- Wetterskog, Daniel;
- Conteduca, Vincenza;
- Franceschini, Gian Marco;
- Kleftogiannis, Dimitrios;
- Jayaram, Anuradha;
- Sandhu, Shahneen;
- Wong, Stephen Q.;
- Benelli, Matteo;
- Salvi, Samanta;
- Gurioli, Giorgia;
- Feber, Andrew;
- Buongermino Pereira, Mariana;
- Wingate, Anna Maria;
- Gonzalez-Billalebeitia, Enrique;
- De Giorgi, Ugo;
- Demichelis, Francesca;
- Lise, Stefano;
- Attard, Gerhardt
Publication type:
journal article
Differential mechanisms of CDKN2A (p16) alteration in oral tongue squamous cell carcinomas and correlation with patient outcome.
Published in:
International Journal of Cancer, 2014, v. 135, n. 4, p. 887, doi. 10.1002/ijc.28727
By:
- Lim, Annette M.;
- Do, Hongdo;
- Young, Richard J.;
- Wong, Stephen Q.;
- Angel, Christopher;
- Collins, Marnie;
- Takano, Elena A.;
- Corry, June;
- Wiesenfeld, David;
- Kleid, Stephen;
- Sigston, Elizabeth;
- Lyons, Bernard;
- Fox, Stephen B.;
- Rischin, Danny;
- Dobrovic, Alexander;
- Solomon, Benjamin
Publication type:
Article
A Phase II trial of alternating osimertinib and gefitinib therapy in advanced EGFR-T790M positive non-small cell lung cancer: OSCILLATE.
Published in:
Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-46008-1
By:
- Tan, Lavinia;
- Brown, Chris;
- Mersiades, Antony;
- Lee, Chee Khoon;
- John, Thomas;
- Kao, Steven;
- Newnham, Genni;
- O’Byrne, Kenneth;
- Parakh, Sagun;
- Bray, Victoria;
- Jasas, Kevin;
- Yip, Sonia;
- Wong, Stephen Q.;
- Ftouni, Sarah;
- Guinto, Jerick;
- Chandrashekar, Sushma;
- Clarke, Stephen;
- Pavlakis, Nick;
- Stockler, Martin R.;
- Dawson, Sarah-Jane
Publication type:
Article
Rapid detection of FLT3 exon 20 tyrosine kinase domain mutations in patients with acute myeloid leukemia by high-resolution melting analysis.
Published in:
Leukemia & Lymphoma, 2012, v. 53, n. 6, p. 1225, doi. 10.3109/10428194.2011.645817
By:
- Tan, Angela Y.-C.;
- Wong, Stephen Q.;
- Nyvold, Charlotte Guldborg;
- Carney, Dennis A.;
- Wei, Andrew;
- Seymour, John F.;
- Hokland, Peter;
- Westerman;
- Dobrovic, Alexander
Publication type:
Article
The landscape of cell-free mitochondrial DNA in liquid biopsy for cancer detection.
Published in:
Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-03074-w
By:
- van der Pol, Ymke;
- Moldovan, Norbert;
- Ramaker, Jip;
- Bootsma, Sanne;
- Lenos, Kristiaan J.;
- Vermeulen, Louis;
- Sandhu, Shahneen;
- Bahce, Idris;
- Pegtel, D. Michiel;
- Wong, Stephen Q.;
- Dawson, Sarah-Jane;
- Chandrananda, Dineika;
- Mouliere, Florent
Publication type:
Article
Integrating Multi-Cancer Early Detection (MCED) Tests with Standard Cancer Screening: System Dynamics Model Development and Feasibility Testing: System Dynamics Modelling for Integrating MCED Tests with Standard Screening: M. Fagery et al.
Published in:
PharmacoEconomics - Open, 2025, v. 9, n. 1, p. 147, doi. 10.1007/s41669-024-00533-3
By:
- Fagery, Mussab;
- Khorshidi, Hadi A.;
- Wong, Stephen Q.;
- Karanfil, Özge;
- Emery, Jon;
- IJzerman, Maarten J.
Publication type:
Article
Low-coverage whole-genome sequencing of extracellular vesicle-associated DNA in patients with metastatic cancer.
Published in:
Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-83436-1
By:
- Nguyen, Bella;
- Wong, Nicholas C.;
- Semple, Tim;
- Clark, Michael;
- Wong, Stephen Q.;
- Leslie, Connull;
- Mirzai, Bob;
- Millward, Michael;
- Meehan, Katie;
- Lim, Annette M.
Publication type:
Article
Identification of single nucleotide variants using position-specific error estimation in deep sequencing data.
Published in:
BMC Medical Genomics, 2019, v. 12, n. 1, p. N.PAG, doi. 10.1186/s12920-019-0557-9
By:
- Kleftogiannis, Dimitrios;
- Punta, Marco;
- Jayaram, Anuradha;
- Sandhu, Shahneen;
- Wong, Stephen Q.;
- Gasi Tandefelt, Delila;
- Conteduca, Vincenza;
- Wetterskog, Daniel;
- Attard, Gerhardt;
- Lise, Stefano
Publication type:
Article
Plasma ctDNA enables early detection of temozolomide resistance mutations in glioma.
Published in:
Neuro-Oncology Advances, 2024, v. 6, n. 1, p. 1, doi. 10.1093/noajnl/vdae041
By:
- Jones, Jordan J;
- Jones, Kate L;
- Wong, Stephen Q;
- Whittle, James;
- Goode, David;
- Nguyen, Hong;
- Iaria, Josie;
- Stylli, Stan;
- Towner, James;
- Pieters, Thomas;
- Gaillard, Frank;
- Kaye, Andrew H;
- Drummond, Kate J;
- Morokoff, Andrew P
Publication type:
Article
Plasma ctDNA liquid biopsy of IDH1, TERTp, and EGFRvIII mutations in glioma.
Published in:
Neuro-Oncology Advances, 2024, v. 6, n. 1, p. 1, doi. 10.1093/noajnl/vdae027
By:
- Jones, Jordan J;
- Nguyen, Hong;
- Wong, Stephen Q;
- Whittle, James;
- Iaria, Josie;
- Stylli, Stanley;
- Towner, James;
- Pieters, Thomas;
- Gaillard, Frank;
- Kaye, Andrew H;
- Drummond, Katharine J;
- Morokoff, Andrew P
Publication type:
Article
Evolution of late-stage metastatic melanoma is dominated by aneuploidy and whole genome doubling.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21576-8
By:
- Vergara, Ismael A.;
- Mintoff, Christopher P.;
- Sandhu, Shahneen;
- McIntosh, Lachlan;
- Young, Richard J.;
- Wong, Stephen Q.;
- Colebatch, Andrew;
- Cameron, Daniel L.;
- Kwon, Julia Lai;
- Wolfe, Rory;
- Peng, Angela;
- Ellul, Jason;
- Dou, Xuelin;
- Fedele, Clare;
- Boyle, Samantha;
- Arnau, Gisela Mir;
- Raleigh, Jeanette;
- Hatzimihalis, Athena;
- Szeto, Pacman;
- Mooi, Jennifer
Publication type:
Article
Bioinformatics Pipelines for Targeted Resequencing and Whole-Exome Sequencing of Human and Mouse Genomes: A Virtual Appliance Approach for Instant Deployment.
Published in:
PLoS ONE, 2014, v. 9, n. 4, p. 1, doi. 10.1371/journal.pone.0095217
By:
- Li, Jason;
- Doyle, Maria A.;
- Saeed, Isaam;
- Wong, Stephen Q.;
- Mar, Victoria;
- Goode, David L.;
- Caramia, Franco;
- Doig, Ken;
- Ryland, Georgina L.;
- Thompson, Ella R.;
- Hunter, Sally M.;
- Halgamuge, Saman K.;
- Ellul, Jason;
- Dobrovic, Alexander;
- Campbell, Ian G.;
- Papenfuss, Anthony T.;
- McArthur, Grant A.;
- Tothill, Richard W.
Publication type:
Article
Optimizing Amplification of the GC-Rich TERT Promoter Region Using 7-Deaza-dGTP for Droplet Digital PCR Quantification of TERT Promoter Mutations.
Published in:
Clinical Chemistry, 2018, v. 64, n. 4, p. 745, doi. 10.1373/clinchem.2017.284257
By:
- Colebatch, Andrew J.;
- Witkowski, Tom;
- Waring, Paul M.;
- McArthur, Grant A.;
- Wong, Stephen Q.;
- Dobrovic, Alexander
Publication type:
Article
Reducing Sequence Artifacts in Amplicon-Based Massively Parallel Sequencing of Formalin-Fixed Paraffin-Embedded DNA by Enzymatic Depletion of Uracil-Containing Templates.
Published in:
Clinical Chemistry, 2013, v. 59, n. 9, p. 1376, doi. 10.1373/clinchem.2012.202390
By:
- Hongdo Do;
- Wong, Stephen Q.;
- Jason Li;
- Dobrovic, Alexander
Publication type:
Article