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A comparative analysis of ENCODE and Cistrome in the context of TF binding signal.
- Published in:
- BMC Genomics, 2024, v. 25, n. 3, p. 1, doi. 10.1186/s12864-024-10668-6
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- Publication type:
- Article
DNAFSMiner: a web-based software toolbox to recognize two types of functional sites in DNA sequences.
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- Bioinformatics, 2005, v. 21, n. 5, p. 671, doi. 10.1093/bioinformatics/bth437
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- Publication type:
- Article
Simple rules underlying gene expression profiles of more than six subtypes of acute lymphoblastic leukemia (ALL) patients.
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- Bioinformatics, 2003, v. 19, n. 1, p. 71
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- Publication type:
- Article
Accomplishments and challenges in literature data mining for biology.
- Published in:
- Bioinformatics, 2002, v. 18, n. 12, p. 1553, doi. 10.1093/bioinformatics/18.12.1553
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- Publication type:
- Article
Identifying good diagnostic gene groups from gene expression profiles using the concept of emerging patterns.
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- Bioinformatics, 2002, v. 18, n. 10, p. 1406
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- Publication type:
- Article
Identifying good diagnostic gene groups from gene expression profiles using the concept of emerging patterns.
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- Bioinformatics, 2002, v. 18, n. 5, p. 725
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- Publication type:
- Article
Using Amino Acid Patterns to Accurately Predict Translation Initiation Sites.
- Published in:
- In Silico Biology, 2004, v. 4, n. 3, p. 255
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- Publication type:
- Article
A consensus linkage map of oil palm and a major QTL for stem height.
- Published in:
- Scientific Reports, 2015, p. 8232, doi. 10.1038/srep08232
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- Article
Iterating on multiple collections in synchrony.
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- Journal of Functional Programming, 2022, v. 32, p. 1, doi. 10.1017/S0956796822000041
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- Publication type:
- Article
Methods for protein complex prediction and their contributions towards understanding the organisation, function and dynamics of complexes.
- Published in:
- FEBS Letters, 2015, v. 589, n. 19PartA, p. 2590, doi. 10.1016/j.febslet.2015.04.026
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- Article
International Conference on Genome Informatics (GIW 2013) in Singapore: introduction to the systems biology contributions.
- Published in:
- BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-I1
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- Publication type:
- Article
International Conference on Genome Informatics (GIW 2013) in Singapore: introduction to the systems biology contributions.
- Published in:
- 2013
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- Publication type:
- Proceeding
Stringent DDI-based Prediction of H. sapiens-M. tuberculosis H37Rv Protein-Protein Interactions.
- Published in:
- BMC Systems Biology, 2013, v. 7, p. 1, doi. 10.1186/1752-0509-7-S6-S6
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- Publication type:
- Article
Supervised maximum-likelihood weighting of composite protein networks for complex prediction.
- Published in:
- BMC Systems Biology, 2012, v. 6, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-6-S2-S13
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- Publication type:
- Article
Embracing noise to improve cross-batch prediction accuracy.
- Published in:
- BMC Systems Biology, 2012, v. 6, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-6-S2-S3
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- Publication type:
- Article
IntPath-an integrated pathway gene relationship database for model organisms and important pathogens.
- Published in:
- BMC Systems Biology, 2012, v. 6, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-6-S2-S2
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- Publication type:
- Article
DBAC: A simple prediction method for protein binding hot spots based on burial levels and deeply buried atomic contacts.
- Published in:
- BMC Systems Biology, 2011, v. 5, p. 1, doi. 10.1186/1752-0509-5-S1-S5
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- Publication type:
- Article
Genome-wide analysis of regions similar to promoters of histone genes.
- Published in:
- BMC Systems Biology, 2010, v. 4, p. 1, doi. 10.1186/1752-0509-4-S1-S4
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- Publication type:
- Article
Protein complex prediction based on k-connected subgraphs in protein interaction network.
- Published in:
- BMC Systems Biology, 2010, v. 4, p. 129, doi. 10.1186/1752-0509-4-129
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- Publication type:
- Article
A Database of Annotated Promoters of Genes Associated with Common Respiratory and Related Diseases.
- Published in:
- American Journal of Respiratory Cell & Molecular Biology, 2012, v. 47, n. 1, p. 112, doi. 10.1165/rcmb.2011-0419OC
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- Publication type:
- Article
GWAMAR: Genome-wide assessment of mutations associated with drug resistance in bacteria.
- Published in:
- BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S10-S10
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- Publication type:
- Article
Rule discovery and distance separation to detect reliable miRNA biomarkers for the diagnosis of lung squamous cell carcinoma.
- Published in:
- BMC Genomics, 2014, v. 15, p. 1, doi. 10.1186/1471-2164-15-S9-S16
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- Publication type:
- Article
Enhancing the utility of Proteomics Signature Profiling (PSP) with Pathway Derived Subnets (PDSs), performance analysis and specialised ontologies.
- Published in:
- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-35
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- Publication type:
- Article
An approach to identifying drug resistance associated mutations in bacterial strains.
- Published in:
- BMC Genomics, 2012, v. 13, n. Suppl 7, p. 1, doi. 10.1186/1471-2164-13-S7-S23
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- Publication type:
- Article
Comparative analysis and assessment of M. tuberculosis H37Rv protein-protein interaction datasets.
- Published in:
- BMC Genomics, 2011, v. 12, n. Suppl 3, p. 1, doi. 10.1186/1471-2164-12-S3-S20
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- Publication type:
- Article
CAMBer: an approach to support comparative analysis of multiple bacterial strains.
- Published in:
- BMC Genomics, 2011, v. 12, n. Suppl 2, p. 1, doi. 10.1186/1471-2164-12-S2-S6
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- Publication type:
- Article
EnsembleFam: towards more accurate protein family prediction in the twilight zone.
- Published in:
- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-022-04626-w
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- Publication type:
- Article
Identifying collateral and synthetic lethal vulnerabilities within the DNA-damage response.
- Published in:
- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04168-7
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- Publication type:
- Article
ProInfer: An interpretable protein inference tool leveraging on biological networks.
- Published in:
- PLoS Computational Biology, 2023, v. 19, n. 3, p. 1, doi. 10.1371/journal.pcbi.1010961
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- Publication type:
- Article
A Probabilistic Graph-Theoretic Approach to Integrate Multiple Predictions for the Protein–Protein Subnetwork Prediction Challenge.
- Published in:
- Annals of the New York Academy of Sciences, 2009, v. 1158, p. 224, doi. 10.1111/j.1749-6632.2008.03760.x
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- Publication type:
- Article
eCAMBer: efficient support for large-scale comparative analysis of multiple bacterial strains.
- Published in:
- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-65
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- Publication type:
- Article
Integrating water exclusion theory into ß contacts to predict binding free energy changes and binding hot spots.
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- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-57
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- Publication type:
- Article
Structural analysis on mutation residues and interfacial water molecules for human TIM disease understanding.
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- BMC Bioinformatics, 2013, v. 14, n. Suppl 16, p. 1, doi. 10.1186/1471-2105-14-S16-S11
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- Publication type:
- Article
Random forests on Hadoop for genome-wide association studies of multivariate neuroimaging phenotypes.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. Suppl 16, p. 1, doi. 10.1186/1471-2105-14-S16-S6
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- Publication type:
- Article
B-cell epitope prediction through a graph model.
- Published in:
- BMC Bioinformatics, 2012, v. 13, n. Suppl 17, p. 1, doi. 10.1186/1471-2105-13-S17-S20
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- Publication type:
- Article
CMPF: Class-switching minimized pathfinding in metabolic networks.
- Published in:
- BMC Bioinformatics, 2012, v. 13, n. Suppl 17, p. 1, doi. 10.1186/1471-2105-13-S17-S17
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- Publication type:
- Article
Improved statistical model checking methods for pathway analysis.
- Published in:
- BMC Bioinformatics, 2012, v. 13, n. Suppl 17, p. 1, doi. 10.1186/1471-2105-13-S17-S15
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- Publication type:
- Article
Finding consistent disease subnetworks across microarray datasets.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. Suppl 13, p. 1, doi. 10.1186/1471-2105-12-S13-S15
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- Publication type:
- Article
Consistency, comprehensiveness, and compatibility of pathway databases.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 449, doi. 10.1186/1471-2105-11-449
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- Publication type:
- Article
FastTagger: an efficient algorithm for genome-widetag SNP selection using multi-marker linkagedisequilib.
- Published in:
- BMC Bioinformatics, 2010, v. 11, p. 66, doi. 10.1186/1471-2105-11-66
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- Publication type:
- Article
Class-paired Fuzzy SubNETs: A paired variant of the rank-based network analysis family for feature selection based on protein complexes.
- Published in:
- Proteomics, 2017, v. 17, n. 10, p. n/a, doi. 10.1002/pmic.201700093
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- Publication type:
- Article
A semi-automated methodology for finding lipid-related GO terms.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2014, v. 2014, p. 1, doi. 10.1093/database/bau089
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- Publication type:
- Article
NAUTICA: classifying transcription factor interactions by positional and protein-protein interaction information.
- Published in:
- Biology Direct, 2020, v. 15, n. 1, p. N.PAG, doi. 10.1186/s13062-020-00268-1
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- Publication type:
- Article
Quantitative proteomics signature profiling based on network contextualization.
- Published in:
- Biology Direct, 2015, v. 10, p. 1, doi. 10.1186/s13062-015-0098-x
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- Publication type:
- Article
Inferring synthetic lethal interactions from mutual exclusivity of genetic events in cancer.
- Published in:
- Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0086-1
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- Publication type:
- Article
Prediction of problematic complexes from PPI networks: sparse, embedded, and small complexes.
- Published in:
- Biology Direct, 2015, v. 10, n. 1, p. 1, doi. 10.1186/s13062-015-0067-4
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- Publication type:
- Article
Protein complex-based analysis is resistant to the obfuscating consequences of batch effects -- a case study in clinical proteomics.
- Published in:
- 2017
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- Publication type:
- Case Study
GFS: fuzzy preprocessing for effective gene expression analysis.
- Published in:
- BMC Bioinformatics, 2016, v. 17, p. 169, doi. 10.1186/s12859-016-1327-8
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- Publication type:
- Article
How much can ChatGPT really help computational biologists in programming?
- Published in:
- Journal of Bioinformatics & Computational Biology, 2024, v. 22, n. 2, p. 1, doi. 10.1142/S021972002471001X
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- Publication type:
- Article
Obstacles to effective model deployment in healthcare.
- Published in:
- Journal of Bioinformatics & Computational Biology, 2023, v. 21, n. 2, p. 1, doi. 10.1142/S0219720023710014
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- Publication type:
- Article