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Structural biology: The transformational era.
- Published in:
- Proteomics, 2023, v. 23, n. 17, p. 1, doi. 10.1002/pmic.202200084
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- Article
The impact of structural bioinformatics tools and resources on SARS-CoV-2 research and therapeutic strategies.
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- Briefings in Bioinformatics, 2021, v. 22, n. 2, p. 742, doi. 10.1093/bib/bbaa362
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- Article
Cover Image, Volume 88, Issue 8.
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- Proteins, 2020, v. 88, n. 8, p. C1, doi. 10.1002/prot.25975
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- Article
Modeling protein interactions and complexes in CAPRI: Seventh CAPRI evaluation meeting, April 3‐5 EMBL‐EBI, Hinxton, UK.
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- Proteins, 2020, v. 88, n. 8, p. 913, doi. 10.1002/prot.25883
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- Article
Modeling protein‐protein, protein‐peptide, and protein‐oligosaccharide complexes: CAPRI 7th edition.
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- Proteins, 2020, v. 88, n. 8, p. 916, doi. 10.1002/prot.25870
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- Article
The challenge of modeling protein assemblies: the CASP12‐CAPRI experiment.
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- Proteins, 2018, v. 86, n. 1, p. 257, doi. 10.1002/prot.25419
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- Publication type:
- Article
Cover Image, Volume 85, Issue 3.
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- Proteins, 2017, v. 85, n. 3, p. C1, doi. 10.1002/prot.25120
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- Article
Modeling protein assemblies: Critical Assessment of Predicted Interactions (CAPRI) 15 years hence.
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- 2017
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- Publication type:
- Editorial
Modeling protein-protein and protein-peptide complexes: CAPRI 6th edition.
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- Proteins, 2017, v. 85, n. 3, p. 359, doi. 10.1002/prot.25215
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- Article
A benchmark testing ground for integrating homology modeling and protein docking.
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- Proteins, 2017, v. 85, n. 1, p. 10, doi. 10.1002/prot.25063
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- Article
Score_set: A CAPRI benchmark for scoring protein complexes.
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- Proteins, 2014, v. 82, n. 11, p. 3163, doi. 10.1002/prot.24678
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- Article
Intercellular network structure and regulatory motifs in the human hematopoietic system.
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- Molecular Systems Biology, 2014, v. 10, n. 7, p. n/a, doi. 10.15252/msb.20145141
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- Article
Docking, scoring, and affinity prediction in CAPRI.
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- Proteins, 2013, v. 81, n. 12, p. 2082, doi. 10.1002/prot.24428
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- Publication type:
- Article
Savant Genome Browser 2: visualization and analysis for population-scale genomics.
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- Nucleic Acids Research, 2012, v. 40, p. W615, doi. 10.1093/nar/gks427
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- Publication type:
- Article
Next-generation protein engineering targets influenza.
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- Nature Biotechnology, 2012, v. 30, n. 6, p. 502, doi. 10.1038/nbt.2268
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- Article
Topic Pages: PLoS Computational Biology Meets Wikipedia.
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- 2012
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- Publication type:
- Editorial
Genetic Interaction Maps in Escherichia coli Reveal Functional Crosstalk among Cell Envelope Biogenesis Pathways.
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- PLoS Genetics, 2011, v. 7, n. 11, p. 1, doi. 10.1371/journal.pgen.1002377
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- Article
Interaction databases on the same page.
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- Nature Biotechnology, 2011, v. 29, n. 5, p. 391, doi. 10.1038/nbt.1867
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- Publication type:
- Article
OrthoNets: simultaneous visual analysis of orthologs and their interaction neighborhoods across different organisms.
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- Bioinformatics, 2011, v. 27, n. 6, p. 883, doi. 10.1093/bioinformatics/btr035
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- Publication type:
- Article
DAnCER: Disease-Annotated Chromatin Epigenetics Resource.
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- Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D889, doi. 10.1093/nar/gkq857
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- Publication type:
- Article
Objective sequence-based subfamily classifications of mouse homeodomains reflect their in vitro DNA-binding preferences.
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- Nucleic Acids Research, 2010, v. 38, n. 22, p. 7927, doi. 10.1093/nar/gkq714
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- Publication type:
- Article
Docking and scoring protein interactions: CAPRI 2009.
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- Proteins, 2010, v. 78, n. 15, p. 3073, doi. 10.1002/prot.22818
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- Publication type:
- Article
Blind predictions of protein interfaces by docking calculations in CAPRI.
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- Proteins, 2010, v. 78, n. 15, p. 3085, doi. 10.1002/prot.22850
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- Publication type:
- Article
Expanding the Landscape of Chromatin Modification (CM)-Related Functional Domains and Genes in Human.
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- PLoS ONE, 2010, v. 5, n. 11, p. 1, doi. 10.1371/journal.pone.0014122
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- Article
The evolutionary landscape of the chromatin modification machinery reveals lineage specific gains, expansions, and losses.
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- Proteins, 2010, v. 78, n. 9, p. 2075, doi. 10.1002/prot.22723
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- Publication type:
- Article
Lead Generation and Optimization Based on Protein-Ligand Complementarity.
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- Molecules, 2010, v. 15, n. 6, p. 4382, doi. 10.3390/molecules15064382
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- Publication type:
- Article
Literature curation of protein interactions: measuring agreement across major public databases.
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- Database: The Journal of Biological Databases & Curation, 2010, v. 2010, p. 1, doi. 10.1093/database/baq026
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- Publication type:
- Article
iRefWeb: interactive analysis of consolidated protein interaction data and their supporting evidence.
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- Database: The Journal of Biological Databases & Curation, 2010, v. 2010, p. 1, doi. 10.1093/database/baq023
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- Publication type:
- Article
Up-to-date catalogues of yeast protein complexes.
- Published in:
- Nucleic Acids Research, 2009, v. 37, n. 3, p. 825, doi. 10.1093/nar/gkn1005
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- Publication type:
- Article
Markov clustering versus affinity propagation for the partitioning of protein interaction graphs.
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- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-99
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- Publication type:
- Article
Local coherence in genetic interaction patterns reveals prevalent functional versatility.
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- Bioinformatics, 2008, v. 24, n. 20, p. 2376, doi. 10.1093/bioinformatics/btn440
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- Publication type:
- Article
Role of the amino acid sequence in domain swapping of the B1 domain of protein G.
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- Proteins, 2008, v. 72, n. 1, p. 88, doi. 10.1002/prot.21901
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- Publication type:
- Article
Coupling of the guanosine glycosidic bond conformation and the ribonucleotide cleavage reaction: Implications for barnase catalysis.
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- Proteins, 2008, v. 70, n. 2, p. 415, doi. 10.1002/prot.21573
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- Publication type:
- Article
LigASite—a database of biologically relevant binding sites in proteins with known apo-structures.
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- Nucleic Acids Research, 2008, v. 36, p. D667
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- Publication type:
- Article
From the Mediterranean coast to the shores of Lake Ontario: CAPRI's premiere on the American continent.
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- Proteins, 2007, v. 69, n. 4, p. 697, doi. 10.1002/prot.21805
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- Article
Docking and scoring protein complexes: CAPRI 3rd Edition.
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- Proteins, 2007, v. 69, n. 4, p. 704, doi. 10.1002/prot.21804
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- Publication type:
- Article
Identifying functional modules in the physical interactome of Saccharomyces cerevisiae.
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- Proteomics, 2007, v. 7, n. 6, p. 944, doi. 10.1002/pmic.200600636
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- Publication type:
- Article
GenePro: a cytoscape plug-in for advanced visualization and analysis of interaction networks.
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- Bioinformatics, 2006, v. 22, n. 17, p. 2178, doi. 10.1093/bioinformatics/btl356
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- Publication type:
- Article
Assessment of CAPRI predictions in rounds 3-5 shows progress in docking procedures.
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- Proteins, 2005, v. 60, n. 2, p. 150, doi. 10.1002/prot.20551
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- Publication type:
- Article
Metabolic PathFinding: inferring relevant pathways in biochemical networks.
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- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w326, doi. 10.1093/nar/gki437
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- Publication type:
- Article
Shift in nucleotide conformational equilibrium contributes to increased rate of catalysis of GpAp versus GpA in barnase.
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- Proteins, 2004, v. 56, n. 2, p. 261, doi. 10.1002/prot.20137
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- Publication type:
- Article
ACLAME: A CLAssification of Mobile genetic Elements.
- Published in:
- Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d45
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- Publication type:
- Article
The aMAZE LightBench: a web interface to a relational database of cellular processes.
- Published in:
- Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d443
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- Publication type:
- Article
An overview of data models for the analysis of biochemical pathways.
- Published in:
- Briefings in Bioinformatics, 2003, v. 4, n. 3, p. 246, doi. 10.1093/bib/4.3.246
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- Publication type:
- Article
CAPRI: A Critical Assessment of PRedicted Interactions.
- Published in:
- Proteins, 2003, v. 52, n. 1, p. 2, doi. 10.1002/prot.10381
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- Publication type:
- Article
Assessment of blind predictions of proteinprotein interactions: Current status of docking methods.
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- Proteins, 2003, v. 52, n. 1, p. 51
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- Publication type:
- Article
Conserved water molecules in MHC class-I molecules and their putative structural and functional roles.
- Published in:
- Protein Engineering, 2002, v. 15, n. 8, p. 697, doi. 10.1093/protein/15.8.697
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- Publication type:
- Article
PESCADOR: The PEptides in Solution ConformAtion Database: Online Resource.
- Published in:
- Journal of Biomolecular NMR, 2002, v. 23, n. 2, p. 85, doi. 10.1023/A:1016346127093
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- Publication type:
- Article
Advanced pairwise structure alignments of proteins and analysis of conformational changes.
- Published in:
- Bioinformatics, 2002, v. 18, n. 4, p. 637, doi. 10.1093/bioinformatics/18.4.637
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- Publication type:
- Article
Standard atomic volumes in double-stranded DNA and packing in protein–DNA interfaces.
- Published in:
- Nucleic Acids Research, 2001, v. 29, n. 16, p. 3362, doi. 10.1093/nar/29.16.3362
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- Publication type:
- Article