Works matching AU Wittbrodt, Joachim

Results: 59

Minimal‐Invasive 3D Laser Printing of Microimplants in Organismo.

Published in:

Advanced Science, 2024, v. 11, n. 30, p. 1, doi. 10.1002/advs.202401110

By:

Afting, Cassian;
Mainik, Philipp;
Vazquez‐Martel, Clara;
Abele, Tobias;
Kaul, Verena;
Kale, Girish;
Göpfrich, Kerstin;
Lemke, Steffen;
Blasco, Eva;
Wittbrodt, Joachim

Publication type:

Article

Quantitative morphometric analysis of adult teleost fish by X-ray computed tomography.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-34848-z

By:

Weinhardt, Venera;
Shkarin, Roman;
Wernet, Tobias;
Wittbrodt, Joachim;
Baumbach, Tilo;
Loosli, Felix

Publication type:

Article

Enhanced in vivo-imaging in medaka by optimized anaesthesia, fluorescent protein selection and removal of pigmentation.

Published in:

PLoS ONE, 2019, v. 14, n. 3, p. 1, doi. 10.1371/journal.pone.0212956

By:

Lischik, Colin Q.;
Adelmann, Leonie;
Wittbrodt, Joachim

Publication type:

Article

Swift Large-scale Examination of Directed Genome Editing.

Published in:

PLoS ONE, 2019, v. 14, n. 3, p. 1, doi. 10.1371/journal.pone.0213317

By:

Hammouda, Omar T.;
Böttger, Frank;
Wittbrodt, Joachim;
Thumberger, Thomas

Publication type:

Article

The centriolar satellite protein SSX2IP promotes centrosome maturation.

Published in:

Journal of Cell Biology, 2013, v. 202, n. 1, p. 81, doi. 10.1083/jcb.201302122

By:

Bärenz, Felix;
Daigo Inoue;
Hideki Yokoyama;
Tegha-Dunghu, Justus;
Freiss, Stephanie;
Draeger, Stefanie;
Mayilo, Dmytro;
Cado, Ivana;
Merker, Sabine;
Klinger, Maren;
Hoeckendorf, Burkhard;
Pilz, Sahra;
Hupfeld, Kerstin;
Steinbeisser, Herbert;
Lorenz, Holger;
Ruppert, Thomas;
Wittbrodt, Joachim;
Gruss, Oliver J.

Publication type:

Article

Precise in vivo functional analysis of DNA variants with base editing using ACEofBASEs target prediction.

Published in:

eLife, 2022, p. 1, doi. 10.7554/eLife.72124

By:

Cornean, Alex;
Gierten, Jakob;
Welz, Bettina;
Mateo, Juan Luis;
Thumberger, Thomas;
Wittbrodt, Joachim

Publication type:

Article

Fish primary embryonic pluripotent cells assemble into retinal tissue mirroring in vivo early eye development.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.66998

By:

Zilova, Lucie;
Weinhardt, Venera;
Tavhelidse, Tinatini;
Schlagheck, Christina;
Thumberger, Thomas;
Wittbrodt, Joachim

Publication type:

Article

CCTop: An Intuitive, Flexible and Reliable CRISPR/Cas9 Target Prediction Tool.

Published in:

PLoS ONE, 2015, v. 10, n. 4, p. 1, doi. 10.1371/journal.pone.0124633

By:

Stemmer, Manuel;
Thumberger, Thomas;
del Sol Keyer, Maria;
Wittbrodt, Joachim;
Mateo, Juan L.

Publication type:

Article

Golden GATEway Cloning – A Combinatorial Approach to Generate Fusion and Recombination Constructs.

Published in:

PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0076117

By:

Kirchmaier, Stephan;
Lust, Katharina;
Wittbrodt, Joachim

Publication type:

Article

A Novel Mammal-Specific Three Partite Enhancer Element Regulates Node and Notochord-Specific Noto Expression.

Published in:

PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0047785

By:

Alten, Leonie;
Schuster-Gossler, Karin;
Eichenlaub, Michael P.;
Wittbrodt, Beate;
Wittbrodt, Joachim;
Gossler, Achim

Publication type:

Article

Combining Computational Prediction of Cis-Regulatory Elements with a New Enhancer Assay to Efficiently Label Neuronal Structures in the Medaka Fish.

Published in:

PLoS ONE, 2011, v. 6, n. 5, p. 1, doi. 10.1371/journal.pone.0019747

By:

Mongin, Emmanuel;
Auer, Thomas O.;
Bourrat, Franck;
Gruhl, Franziska;
Dewar, Ken;
Blanchette, Mathieu;
Wittbrodt, Joachim;
Ettwiller, Laurence

Publication type:

Article

One for All-A Highly Efficient and Versatile Method for Fluorescent Immunostaining in Fish Embryos.

Published in:

PLoS ONE, 2011, v. 6, n. 5, p. 1, doi. 10.1371/journal.pone.0019713

By:

Inoue, Daigo;
Wittbrodt, Joachim

Publication type:

Article

Modular control of vertebrate axis segmentation in time and space.

Published in:

EMBO Journal, 2024, v. 43, n. 18, p. 4068, doi. 10.1038/s44318-024-00186-2

By:

Seleit, Ali;
Brettell, Ian;
Fitzgerald, Tomas;
Vibe, Carina;
Loosli, Felix;
Wittbrodt, Joachim;
Naruse, Kiyoshi;
Birney, Ewan;
Aulehla, Alexander

Publication type:

Article

Pcdh18a regulates endocytosis of E-cadherin during axial mesoderm development in zebrafish.

Published in:

Histochemistry & Cell Biology, 2020, v. 154, n. 5, p. 463, doi. 10.1007/s00418-020-01887-5

By:

Bosze, Bernadett;
Ono, Yosuke;
Mattes, Benjamin;
Sinner, Claude;
Gourain, Victor;
Thumberger, Thomas;
Tlili, Sham;
Wittbrodt, Joachim;
Saunders, Timothy E.;
Strähle, Uwe;
Schug, Alexander;
Scholpp, Steffen

Publication type:

Article

Notch1 deficiency alters the migratory behavior of developing T cells and calcium signaling in the thymus of medaka.

Published in:

European Journal of Immunology, 2022, v. 52, n. 2, p. 261, doi. 10.1002/eji.202149512

By:

Aghaallaei, Narges;
Inoue, Daigo;
Hasel de Carvalho, Eva;
Dick, Advaita M.;
Wittbrodt, Joachim;
Leptin, Maria;
Bajoghli, Baubak

Publication type:

Article

Expression screening using a Medaka cDNA library identifies evolutionarily conserved regulators of the p53/Mdm2 pathway.

Published in:

BMC Biotechnology, 2015, v. 15, n. 1, p. 1, doi. 10.1186/s12896-015-0208-y

By:

Ping Zhang;
Kratz, Anne Sophie;
Salama, Mohammed;
Elabd, Seham;
Heinrich, Thorsten;
Wittbrodt, Joachim;
Blattner, Christine;
Davidson, Gary

Publication type:

Article

Efficient activation of gene expression using a heat-shock inducible Gal4/Vp16-UAS system in medaka.

Published in:

BMC Biotechnology, 2004, v. 4, p. 26, doi. 10.1186/1472-6750-4-26

By:

Grabher, Clemens;
Wittbrodt, Joachim

Publication type:

Article

The Genomic and Genetic Toolbox of the Teleost Medaka (Oryzias latipes).

Published in:

Genetics, 2015, v. 199, n. 4, p. 905, doi. 10.1534/genetics.114.173849

By:

Kirchmaier, Stephan;
Kiyoshi Naruse;
Wittbrodt, Joachim;
Loosli, Felix

Publication type:

Article

Correction: CCTop: An Intuitive, Flexible and Reliable CRISPR/Cas9 Target Prediction Tool.

Published in:

2017

By:

Stemmer, Manuel;
Thumberger, Thomas;
del Sol Keyer, Maria;
Wittbrodt, Joachim;
Mateo, Juan L.

Publication type:

Correction Notice

Tyrosine phosphorylation of LRP6 by Src and Fer inhibits Wnt/β-catenin signalling.

Published in:

EMBO Reports, 2014, v. 15, n. 12, p. 1254, doi. 10.15252/embr.201439644

By:

Chen, Qing;
Su, Yi;
Wesslowski, Janine;
Hagemann, Anja I;
Ramialison, Mirana;
Wittbrodt, Joachim;
Scholpp, Steffen;
Davidson, Gary

Publication type:

Article

Ubiquitin-specific protease-like 1 (USPL1) is a SUMO isopeptidase with essential, non-catalytic functions.

Published in:

EMBO Reports, 2012, v. 13, n. 10, p. 930, doi. 10.1038/embor.2012.125

By:

Schulz, Sarah;
Chachami, Georgia;
Kozaczkiewicz, Lukasz;
Winter, Ulrike;
Stankovic-Valentin, Nicolas;
Haas, Petra;
Hofmann, Kay;
Urlaub, Henning;
Ovaa, Huib;
Wittbrodt, Joachim;
Meulmeester, Erik;
Melchior, Frauke

Publication type:

Article

Genotype imputation in F2 crosses of inbred lines.

Published in:

Bioinformatics Advances, 2024, v. 4, n. 1, p. 1, doi. 10.1093/bioadv/vbae107

By:

Pierotti, Saul;
Welz, Bettina;
Osuna-López, Mireia;
Fitzgerald, Tomas;
Wittbrodt, Joachim;
Birney, Ewan

Publication type:

Article

MEDAKA ? A MODEL ORGANISM FROM THE FAR EAST.

Published in:

Nature Reviews Genetics, 2002, v. 3, n. 1, p. 53, doi. 10.1038/nrg704

By:

Wittbrodt, Joachim;
Shima, Akihiro;
Schartl, Manfred

Publication type:

Article

Introducing Biomedisa as an open-source online platform for biomedical image segmentation.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19303-w

By:

Lösel, Philipp D.;
van de Kamp, Thomas;
Jayme, Alejandra;
Ershov, Alexey;
Faragó, Tomáš;
Pichler, Olaf;
Tan Jerome, Nicholas;
Aadepu, Narendar;
Bremer, Sabine;
Chilingaryan, Suren A.;
Heethoff, Michael;
Kopmann, Andreas;
Odar, Janes;
Schmelzle, Sebastian;
Zuber, Marcus;
Wittbrodt, Joachim;
Baumbach, Tilo;
Heuveline, Vincent

Publication type:

Article

Loss and Rebirth of the Animal Microtubule Organizing Center: How Maternal Expression of Centrosomal Proteins Cooperates with the Sperm Centriole in Zygotic Centrosome Reformation.

Published in:

BioEssays, 2018, v. 40, n. 4, p. 1, doi. 10.1002/bies.201700135

By:

Inoue, Daigo;
Wittbrodt, Joachim;
Gruss, Oliver J.

Publication type:

Article

Characterizing medaka visual features using a high-throughput optomotor response assay.

Published in:

PLoS ONE, 2024, v. 19, n. 6, p. 1, doi. 10.1371/journal.pone.0302092

By:

Suzuki, Risa;
Woo, Jia Zheng;
Thumberger, Thomas;
Hofmann, Gero;
Wittbrodt, Joachim;
Tavhelidse-Suck, Tinatini

Publication type:

Article

Rx-Cre, a tool for inactivation of gene expression in the developing retina.

Published in:

Genesis: The Journal of Genetics & Development, 2006, v. 44, n. 8, p. 361, doi. 10.1002/dvg.20225

By:

Swindell, Eric C.;
Bailey, Travis J.;
Loosli, Felix;
Liu, Chaomei;
Amaya-Manzanares, Felipe;
Mahon, Kathleen A.;
Wittbrodt, Joachim;
Jamrich, Milan

Publication type:

Article

Loss of maternal Smad5 in zebrafish embryos affects patterning and morphogenesis of optic primordia.

Published in:

Developmental Dynamics, 2003, v. 227, n. 1, p. 128

By:

Matthias Hammerschmidt;
Carina Kramer;
Matthias Nowak;
Wiebke Herzog;
Joachim Wittbrodt

Publication type:

Article

Dynamics of in vivo ASC speck formation.

Published in:

Journal of Cell Biology, 2017, v. 216, n. 9, p. 2891, doi. 10.1083/jcb.201703103

By:

Kuri, Paola;
Leptin, Maria;
Schieber, Nicole L.;
Schwab, Yannick;
Thumberger, Thomas;
Wittbrodt, Joachim

Publication type:

Article

Visualisation of gene expression within the context of tissues using an X-ray computed tomography-based multimodal approach.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-58766-5

By:

Kairišs, Kristaps;
Sokolova, Natalia;
Zilova, Lucie;
Schlagheck, Christina;
Reinhardt, Robert;
Baumbach, Tilo;
Faragó, Tomáš;
van de Kamp, Thomas;
Wittbrodt, Joachim;
Weinhardt, Venera

Publication type:

Article

Natural genetic variation quantitatively regulates heart rate and dimension.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-59425-7

By:

Gierten, Jakob;
Welz, Bettina;
Fitzgerald, Tomas;
Thumberger, Thomas;
Agarwal, Rashi;
Hummel, Oliver;
Leger, Adrien;
Weber, Philipp;
Naruse, Kiyoshi;
Hassel, David;
Hübner, Norbert;
Birney, Ewan;
Wittbrodt, Joachim

Publication type:

Article

Author Correction: Introducing Biomedisa as an open-source online platform for biomedical image segmentation.

Published in:

2024

By:

Lösel, Philipp D.;
van de Kamp, Thomas;
Jayme, Alejandra;
Ershov, Alexey;
Faragó, Tomáš;
Pichler, Olaf;
Jerome, Nicholas Tan;
Aadepu, Narendar;
Bremer, Sabine;
Chilingaryan, Suren A.;
Heethoff, Michael;
Kopmann, Andreas;
Odar, Janes;
Schmelzle, Sebastian;
Zuber, Marcus;
Wittbrodt, Joachim;
Baumbach, Tilo;
Heuveline, Vincent

Publication type:

Correction Notice

Fast, high-contrast imaging of animal development with scanned light sheet-based structured-illumination microscopy.

Published in:

Nature Methods, 2010, v. 7, n. 8, p. 637, doi. 10.1038/nmeth.1476

By:

Keller, Philipp J.;
Schmidt, Annette D.;
Santella, Anthony;
Khairy, Khaled;
Zhirong Bao;
Wittbrodt, Joachim;
Stelzer, Ernst H. K.

Publication type:

Article

Trawler: de novo regulatory motif discovery pipeline for chromatin immunoprecipitation.

Published in:

Nature Methods, 2007, v. 4, n. 7, p. 563, doi. 10.1038/nmeth1061

By:

Ettwiller, Laurence;
Paten, Benedict;
Ramialison, Mirana;
Birney, Ewan;
Wittbrodt, Joachim

Publication type:

Article

Direct interaction of geminin and Six3 in eye development.

Published in:

Nature, 2004, v. 427, n. 6976, p. 745, doi. 10.1038/nature02292

By:

del Ben, Filippo;
Tessmar-Raible, Kristin;
Wittbrodt, Joachim

Publication type:

Article

Evolution of the bilaterian larval foregut.

Published in:

Nature, 2001, v. 409, n. 6816, p. 81, doi. 10.1038/35051075

By:

Arendt, Detlev;
Technau, Ulrich;
Wittbrodt, Joachim

Publication type:

Article

The medaka mutation tintachina sheds light on the evolution of V-ATPase B subunits in vertebrates.

Published in:

Scientific Reports, 2013, p. 1, doi. 10.1038/srep03217

By:

Müller, Claudia;
Maeso, Ignacio;
Wittbrodt, Joachim;
Martínez-Morales, Juan R.

Publication type:

Article

Efficient single copy integration via homology-directed repair (scHDR) by 5′modification of large DNA donor fragments in mice.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 3, p. e14, doi. 10.1093/nar/gkac1150

By:

Medert, Rebekka;
Thumberger, Thomas;
Tavhelidse-Suck, Tinatini;
Hub, Tobias;
Kellner, Tanja;
Oguchi, Yoko;
Dlugosz, Sascha;
Zimmermann, Frank;
Wittbrodt, Joachim;
Freichel, Marc

Publication type:

Article

Expression of the novel maternal centrosome assembly factor Wdr8 is required for vertebrate embryonic mitoses.

Published in:

Nature Communications, 2017, v. 8, n. 1, p. 14090, doi. 10.1038/ncomms14090

By:

Inoue, Daigo;
Stemmer, Manuel;
Thumberger, Thomas;
Ruppert, Thomas;
Bärenz, Felix;
Wittbrodt, Joachim;
Gruss, Oliver J.

Publication type:

Article

Correction: Handling Permutation in Sequence Comparison: Genome-Wide Enhancer Prediction in Vertebrates by a Novel Non-Linear Alignment Scoring Principle.

Published in:

PLoS ONE, 2015, v. 10, n. 11, p. 1, doi. 10.1371/journal.pone.0143989

By:

Dolle, Dirk;
Mateo, Juan L.;
Eichenlaub, Michael P.;
Sinn, Rebecca;
Reinhardt, Robert;
Höckendorf, Burkhard;
Inoue, Daigo;
Centanin, Lazaro;
Ettwiller, Laurence;
Wittbrodt, Joachim

Publication type:

Article

Handling Permutation in Sequence Comparison: Genome-Wide Enhancer Prediction in Vertebrates by a Novel Non-Linear Alignment Scoring Principle.

Published in:

PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0141487

By:

Dolle, Dirk;
Mateo, Juan L.;
Eichenlaub, Michael P.;
Sinn, Rebecca;
Reinhardt, Robert;
Höckendorf, Burkhard;
Inoue, Daigo;
Centanin, Lazaro;
Ettwiller, Laurence;
Wittbrodt, Joachim

Publication type:

Article

Loss of eyes in zebrafish caused by mutation of chokh/rx3.

Published in:

EMBO Reports, 2003, v. 4, n. 9, p. 894, doi. 10.1038/sj.embor.embor919

By:

Loosli, Felix;
Staub, Wendy;
Finger-Baier, Karin C.;
Ober, Elke A.;
Verkade, Heather;
Wittbrodt, Joachim;
Baier, Herwig

Publication type:

Article

Fish genomes flying.

Published in:

EMBO Reports, 2003, v. 4, n. 2, p. 121, doi. 10.1038/sj.embor.embor743

By:

Shima, Akihiro;
Himmelbauer, Heinz;
Mitani, Hiroshi;
Furutani-Seiki, Makoto;
Wittbrodt, Joachim;
Schartl, Manfred

Publication type:

Article

N -Glycosylation of LRP6 by B3GnT2 Promotes Wnt/β-Catenin Signalling.

Published in:

Cells (2073-4409), 2023, v. 12, n. 6, p. 863, doi. 10.3390/cells12060863

By:

Xu, Ruiyao;
Wang, Xianxian;
Safi, Sadia;
Braunegger, Nico;
Hipgrave Ederveen, Agnes;
Rottmann, Michelle;
Wittbrodt, Joachim;
Wuhrer, Manfred;
Wesslowski, Janine;
Davidson, Gary

Publication type:

Article

MEPD: a Medaka gene expression pattern database.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 1, p. 72, doi. 10.1093/nar/gkg017

By:

Henrich, Thorsten;
Ramialison, Mirana;
Quiring, Rebecca;
Wittbrodt, Beate;
Furutani-Seiki, Makoto;
Wittbrodt, Joachim;
Kondoh, Hisato

Publication type:

Article

Two‐Photon Laser Printing to Mechanically Stimulate Multicellular Systems in 3D.

Published in:

Advanced Functional Materials, 2024, v. 34, n. 19, p. 1, doi. 10.1002/adfm.202303601

By:

Colombo, Federico;
Taale, Mohammadreza;
Taheri, Fereydoon;
Villiou, Maria;
Debatin, Teresa;
Dulatahu, Gent;
Kollenz, Philipp;
Schmidt, Målin;
Schlagheck, Christina;
Wittbrodt, Joachim;
Selhuber‐Unkel, Christine

Publication type:

Article

Gastrulation in an annual killifish: Molecular and cellular events during germ layer formation in Austrolebias.

Published in:

Developmental Dynamics, 2017, v. 246, n. 11, p. 812, doi. 10.1002/dvdy.24496

By:

Pereiro, Luisa;
Loosli, Felix;
Fernández, Juan;
Härtel, Steffen;
Wittbrodt, Joachim;
Concha, Miguel L.

Publication type:

Article

Identification of starmaker-like in medaka as a putative target gene of Pax2 in the otic vesicle.

Published in:

Developmental Dynamics, 2009, v. 238, n. 11, p. 2860, doi. 10.1002/dvdy.22093

By:

Bajoghli, Baubak;
Ramialison, Mirana;
Aghaallaei, Narges;
Czerny, Thomas;
Wittbrodt, Joachim

Publication type:

Article

FEHAT: efficient, large scale and automated heartbeat detection in Medaka fish embryos.

Published in:

Bioinformatics, 2024, v. 40, n. 12, p. 1, doi. 10.1093/bioinformatics/btae664

By:

Ferreira, Marcio Soares;
Stricker, Sebastian;
Fitzgerald, Tomas;
Monahan, Jack;
Defranoux, Fanny;
Watson, Philip;
Welz, Bettina;
Hammouda, Omar;
Wittbrodt, Joachim;
Birney, Ewan

Publication type:

Article

In vivo identification and validation of novel potential predictors for human cardiovascular diseases.

Published in:

PLoS ONE, 2021, v. 16, n. 12, p. 1, doi. 10.1371/journal.pone.0261572

By:

Hammouda, Omar T.;
Wu, Meng Yue;
Kaul, Verena;
Gierten, Jakob;
Thumberger, Thomas;
Wittbrodt, Joachim

Publication type:

Article