Works by Wishart, David S.

Results: 196

Elevated butyric acid and histamine in feces and serum as an indicator of onset of necrotic enteritis in broiler chickens.

Published in:

Frontiers in Microbiology, 2025, p. 1, doi. 10.3389/fmicb.2025.1581309

By:

Gautam, Hemlata;
Ahmad, Shaik Noor;
Banaganapalli, Babajan;
Popowich, Shelly;
Chow-Lockerbie, Betty;
Ayalew, Lisanework E.;
Mandal, Rupasri;
Wishart, David S.;
Tikoo, Suresh;
Gomis, Susantha

Publication type:

Article

Rapid and reliable protein structure determination via chemical shift threading.

Published in:

Journal of Biomolecular NMR, 2018, v. 70, n. 1, p. 33, doi. 10.1007/s10858-017-0154-1

By:

Hafsa, Noor E.;
Berjanskii, Mark V.;
Arndt, David;
Wishart, David S.

Publication type:

Article

SHIFTX2: significantly improved protein chemical shift prediction.

Published in:

Journal of Biomolecular NMR, 2011, v. 50, n. 1, p. 43, doi. 10.1007/s10858-011-9478-4

By:

Beomsoo Han;
Yifeng Liu;
Ginzinger, Simon W.;
Wishart, David S.

Publication type:

Article

Solution Structure of MTH0776 from Methanobacterium Thermoautotrophicum.

Published in:

Journal of Biomolecular NMR, 2005, v. 33, n. 1, p. 51, doi. 10.1007/s10858-005-1275-5

By:

Amegbey, Godwin;
Stothard, Paul;
Kuznetsova, Ekaterina;
Yee, Adelinda;
Arrowsmith, Cheryl H.;
Wishart, David S.

Publication type:

Article

Letter to the Editor: Complete1H,13C and15N NMR assignments of MTH0776 fromMethanobacterium thermoautotrophicum.

Published in:

Journal of Biomolecular NMR, 2004, v. 30, n. 4, p. 459, doi. 10.1007/s10858-004-4341-5

By:

Amegbey, Godwin;
Chang, Zhan;
Stothard, Paul;
Yee, Adelinda;
Arrowsmith, Cheryl;
Wishart, David S.

Publication type:

Article

Solution structures of reduced and oxidized bacteriophage T4 glutaredoxin.

Published in:

Journal of Biomolecular NMR, 2004, v. 29, n. 1, p. 85, doi. 10.1023/B:JNMR.0000019506.30351.ca

By:

Yunjun Wang;
Amegbey, Godwin;
Wishart, David S.

Publication type:

Article

Rapid and accurate calculation of protein 1H, 13C and 15N chemical shifts.

Published in:

Journal of Biomolecular NMR, 2003, v. 26, n. 3, p. 215, doi. 10.1023/A:1023812930288

By:

Neal, Stephen;
Nip, Alex M.;
Haiyan Zhang;
Wishart, David S.

Publication type:

Article

Letter to the Editor: Backbone 1H, 15N and 13C assignments for the human rhinovirus 3C protease (serotype 14).

Published in:

Journal of Biomolecular NMR, 2003, v. 26, n. 1, p. 85, doi. 10.1023/A:1023014717644

By:

Bjorndahl, Trent C.;
Monzavi, Hassan;
Wishart, David S.

Publication type:

Article

RefDB: A database of uniformly referenced protein chemical shifts.

Published in:

Journal of Biomolecular NMR, 2003, v. 25, n. 3, p. 173, doi. 10.1023/A:1022836027055

By:

Zhang, Haiyan;
Neal, Stephen;
Wishart, David S.

Publication type:

Article

Prediction of genetic structure in eukaryotic DNA using reference point logistic regression and sequence alignment.

Published in:

Bioinformatics, 2000, v. 16, n. 5, p. 425, doi. 10.1093/bioinformatics/16.5.425

By:

Hooper, Peter M.;
Zhang, Haiyan;
Wishart, David S.

Publication type:

Article

Mice Treated Subcutaneously with Mouse LPS-Converted PrPres or LPS Alone Showed Brain Gene Expression Profiles Characteristic of Prion Disease.

Published in:

Veterinary Sciences, 2021, v. 8, n. 9, p. 1, doi. 10.3390/vetsci8090200

By:

Hailemariam, Dagnachew;
Goldansaz, Seyed Ali;
Daude, Nathalie;
Wishart, David S.;
Ametaj, Burim N.

Publication type:

Article

Dynamic Cellular Automata: An Alternative Approach to Cellular Simulation.

Published in:

In Silico Biology, 2005, v. 5, n. 2, p. 139

By:

Wishart, David S.;
Yang, Robert;
Arndt, David;
Tang, Peter;
Cruz, Joseph

Publication type:

Article

The plasma metabolome of long COVID patients two years after infection.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-39049-x

By:

López-Hernández, Yamilé;
Monárrez-Espino, Joel;
López, David Alejandro García;
Zheng, Jiamin;
Borrego, Juan Carlos;
Torres-Calzada, Claudia;
Elizalde-Díaz, José Pedro;
Mandal, Rupasri;
Berjanskii, Mark;
Martínez-Martínez, Eduardo;
López, Jesús Adrián;
Wishart, David S.

Publication type:

Article

MSEA: a web-based tool to identify biologically meaningful patterns in quantitative metabolomic data.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W71, doi. 10.1093/nar/gkq329

By:

Xia, Jianguo;
Wishart, David S.

Publication type:

Article

PROSESS: a protein structure evaluation suite and server.

Published in:

Nucleic Acids Research, 2010, v. 38, n. suppl_2, p. W633, doi. 10.1093/nar/gkq375

By:

Berjanskii, Mark;
Liang, Yongjie;
Zhou, Jianjun;
Tang, Peter;
Stothard, Paul;
Zhou, You;
Cruz, Joseph;
MacDonell, Cam;
Lin, Guohui;
Lu, Paul;
Wishart, David S.

Publication type:

Article

SMPDB: The Small Molecule Pathway Database.

Published in:

Nucleic Acids Research, 2010, v. 38, p. D480, doi. 10.1093/nar/gkp1002

By:

Frolkis, Alex;
Knox, Craig;
Lim, Emilia;
Jewison, Timothy;
Law, Vivian;
Hau, David D.;
Liu, Phillip;
Gautam, Bijaya;
Son Ly;
An Chi Guo;
Jianguo Xia;
Yongjie Liang;
Shrivastava, Savita;
Wishart, David S.

Publication type:

Article

T3DB: a comprehensively annotated database of common toxins and their targets.

Published in:

Nucleic Acids Research, 2010, v. 38, p. D781, doi. 10.1093/nar/gkp934

By:

Lim, Emilia;
Pon, Allison;
Djoumbou, Yannick;
Knox, Craig;
Shrivastava, Savita;
An Chi Guo;
Neveu, Vanessa;
Wishart, David S.

Publication type:

Article

MetaboAnalyst: a web server for metabolomic data analysis and interpretation.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W652, doi. 10.1093/nar/gkp356

By:

Xia, Jianguo;
Psychogios, Nick;
Young, Nelson;
Wishart, David S.

Publication type:

Article

GeNMR: a web server for rapid NMR-based protein structure determination.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W670, doi. 10.1093/nar/gkp280

By:

Berjanskii, Mark;
Tang, Peter;
Liang, Jack;
Cruz, Joseph A.;
Zhou, Jianjun;
Zhou, You;
Bassett, Edward;
MacDonell, Cam;
Lu, Paul;
Lin, Guohui;
Wishart, David S.

Publication type:

Article

HMDB: a knowledgebase for the human metabolome.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D603, doi. 10.1093/nar/gkn810

By:

Wishart, David S.;
Knox, Craig;
Guo, An Chi;
Eisner, Roman;
Young, Nelson;
Gautam, Bijaya;
Hau, David D.;
Psychogios, Nick;
Dong, Edison;
Bouatra, Souhaila;
Mandal, Rupasri;
Sinelnikov, Igor;
Xia, Jianguo;
Jia, Leslie;
Cruz, Joseph A.;
Lim, Emilia;
Sobsey, Constance A.;
Shrivastava, Savita;
Huang, Paul;
Liu, Philip

Publication type:

Article

CS23D: a web server for rapid protein structure generation using NMR chemical shifts and sequence data.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W496, doi. 10.1093/nar/gkn305

By:

Wishart, David S.;
Arndt, David;
Berjanskii, Mark;
Tang, Peter;
Zhou, Jianjun;
Lin, Guohui

Publication type:

Article

PolySearch: a web-based text mining system for extracting relationships between human diseases, genes, mutations, drugs and metabolites.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W399, doi. 10.1093/nar/gkn296

By:

Cheng, Dean;
Knox, Craig;
Young, Nelson;
Stothard, Paul;
Damaraju, Sambasivarao;
Wishart, David S.

Publication type:

Article

PROTEUS2: a web server for comprehensive protein structure prediction and structure-based annotation.

Published in:

Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W202, doi. 10.1093/nar/gkn255

By:

Montgomerie, Scott;
Cruz, Joseph A.;
Shrivastava, Savita;
Arndt, David;
Berjanskii, Mark;
Wishart, David S.

Publication type:

Article

PPT-DB: the protein property prediction and testing database.

Published in:

Nucleic Acids Research, 2008, v. 36, p. D222

By:

Wishart, David S.;
Arndt, David;
Berjanskii, Mark;
Guo, An Chi;
Shi, Yi;
Shrivastava, Savita;
Zhou, Jianjun;
Zhou, You;
Lin, Guohui

Publication type:

Article

DrugBank: a knowledgebase for drugs, drug actions and drug targets.

Published in:

Nucleic Acids Research, 2008, v. 36, p. D901, doi. 10.1093/nar/gkm958

By:

Wishart, David S.;
Knox, Craig;
Guo, An Chi;
Cheng, Dean;
Shrivastava, Savita;
Tzur, Dan;
Gautam, Bijaya;
Hassanali, Murtaza

Publication type:

Article

The RCI server: rapid and accurate calculation of protein flexibility using chemical shifts.

Published in:

Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W531, doi. 10.1093/nar/gkm328

By:

Berjanskii, Mark V.;
Wishart, David S.

Publication type:

Article

HMDB: the Human Metabolome Database.

Published in:

Nucleic Acids Research, 2007, v. 35, p. d521, doi. 10.1093/nar/gkl923

By:

Wishart, David S.;
Tzur, Dan;
Knox, Craig;
Eisner, Roman;
Guo, An Chi;
Young, Nelson;
Cheng, Dean;
Jewell, Kevin;
Arndt, David;
Sawhney, Summit;
Fung, Chris;
Nikolai, Lisa;
Lewis, Mike;
Coutouly, Marie-Aude;
Forsythe, Ian;
Tang, Peter;
Shrivastava, Savita;
Jeroncic, Kevin;
Stothard, Paul;
Amegbey, Godwin

Publication type:

Article

PREDITOR: a web server for predicting protein torsion angle restraints.

Published in:

Nucleic Acids Research, 2006, v. 34, n. 11, p. w63, doi. 10.1093/nar/gkl341

By:

Berjanskii, Mark V.;
Neal, Stephen;
Wishart, David S.

Publication type:

Article

DrugBank: a comprehensive resource for in silico drug discovery and exploration.

Published in:

Nucleic Acids Research, 2006, v. 34, n. suppl 1, p. d668, doi. 10.1093/nar/gkj067

By:

Wishart, David S.;
Knox, Craig;
Guo, An Chi;
Shrivastava, Savita;
Hassanali, Murtaza;
Stothard, Paul;
Chang, Zhan;
Woolsey, Jennifer

Publication type:

Article

BASys: a web server for automated bacterial genome annotation.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w455, doi. 10.1093/nar/gki593

By:

Van Domselaar, Gary H.;
Stothard, Paul;
Shrivastava, Savita;
Cruz, Joseph A.;
Guo, AnChi;
Dong, Xiaoli;
Lu, Paul;
Szafron, Duane;
Greiner, Russ;
Wishart, David S.

Publication type:

Article

MovieMaker: a web server for rapid rendering of protein motions and interactions.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w358, doi. 10.1093/nar/gki485

By:

Maiti, Rajarshi;
Van Domselaar, Gary H.;
Wishart, David S.

Publication type:

Article

PA-GOSUB: a searchable database of model organism protein sequences with their predicted Gene Ontology molecular function and subcellular localization.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d147

By:

Lu, Paul;
Szafron, Duane;
Greiner, Russell;
Wishart, David S.;
Fyshe, Alona;
Pearcy, Brandon;
Poulin, Brett;
Eisner, Roman;
Ngo, Danny;
Lamb, Nicholas

Publication type:

Article

BacMap: an interactive picture atlas of annotated bacterial genomes.

Published in:

Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d317

By:

Stothard, Paul;
Van Domselaar, Gary;
Shrivastava, Savita;
Guo, Anchi;
O'Neill, Brian;
Cruz, Joseph;
Ellison, Michael;
Wishart, David S.

Publication type:

Article

Proteome Analyst: custom predictions with explanations in a web-based tool for high-throughput proteome annotations.

Published in:

Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w365, doi. 10.1093/nar/gkh485

By:

Szafron, Duane;
Lu, Paul;
Greiner, Russell;
Wishart, David S.;
Poulin, Brett;
Eisner, Roman;
Lu, Zhiyong;
Anvik, John;
Macdonell, Cam;
Fyshe, Alona;
Meeuwis, David

Publication type:

Article

SuperPose: a simple server for sophisticated structural superposition.

Published in:

Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w590, doi. 10.1093/nar/gkh477

By:

Maiti, Rajarshi;
Van Domselaar, Gary H.;
Zhang, Haiyan;
Wishart, David S.

Publication type:

Article

PlasMapper: a web server for drawing and auto-annotating plasmid maps.

Published in:

Nucleic Acids Research, 2004, v. 32, n. suppl 2, p. w660, doi. 10.1093/nar/gkh410

By:

Dong, Xiaoli;
Stothard, Paul;
Forsythe, Ian J.;
Wishart, David S.

Publication type:

Article

The CyberCell Database (CCDB): a comprehensive, self‐updating, relational database to coordinate and facilitate in silico modeling of Escherichia coli.

Published in:

Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d293

By:

Sundararaj, Shan;
Guo, Anchi;
Habibi‐Nazhad, Bahram;
Rouani, Melania;
Stothard, Paul;
Ellison, Michael;
Wishart, David S.

Publication type:

Article

VADAR: a web server for quantitative evaluation of protein structure quality.

Published in:

Nucleic Acids Research, 2003, v. 31, n. 13, p. 3316, doi. 10.1093/nar/gkg565

By:

Willard, Leigh;
Ranjan, Anuj;
Zhang, Haiyan;
Monzavi, Hassan;
Boyko, Robert F.;
Sykes, Brian D.;
Wishart, David S.

Publication type:

Article

Metabolomic Profiling of Pulmonary Neuroendocrine Neoplasms.

Published in:

Cancers, 2024, v. 16, n. 18, p. 3179, doi. 10.3390/cancers16183179

By:

Boullier, Clémence;
Lamaze, Fabien C.;
Haince, Jean-François;
Bux, Rashid Ahmed;
Orain, Michèle;
Zheng, Jiamin;
Zhang, Lun;
Wishart, David S.;
Bossé, Yohan;
Manem, Venkata S. K.;
Joubert, Philippe

Publication type:

Article

A High-Performing Plasma Metabolite Panel for Early-Stage Lung Cancer Detection.

Published in:

Cancers, 2020, v. 12, n. 3, p. 622, doi. 10.3390/cancers12030622

By:

Zhang, Lun;
Zheng, Jiamin;
Ahmed, Rashid;
Huang, Guoyu;
Reid, Jennifer;
Mandal, Rupasri;
Maksymuik, Andrew;
Sitar, Daniel S.;
Tappia, Paramjit S.;
Ramjiawan, Bram;
Joubert, Philippe;
Russo, Alessandro;
Rolfo, Christian D.;
Wishart, David S.

Publication type:

Article

BioTransformer: a comprehensive computational tool for small molecule metabolism prediction and metabolite identification.

Published in:

Journal of Cheminformatics, 2019, v. 11, n. 1, p. 1, doi. 10.1186/s13321-018-0324-5

By:

Djoumbou-Feunang, Yannick;
Fiamoncini, Jarlei;
Gil-de-la-Fuente, Alberto;
Greiner, Russell;
Manach, Claudine;
Wishart, David S.

Publication type:

Article

Metabolomic fingerprinting of milk fever cows: Pre‐ and postpartum metabolite alterations.

Published in:

Journal of Veterinary Internal Medicine, 2024, v. 38, n. 6, p. 3384, doi. 10.1111/jvim.17217

By:

Zwierzchowski, Grzegorz;
Zhang, Guanshi;
Tobolski, Dawid;
Wójcik, Roman;
Wishart, David S.;
Ametaj, Burim N.

Publication type:

Article

Herbs and Spices- Biomarkers of Intake Based on Human Intervention Studies – A Systematic Review.

Published in:

Genes & Nutrition, 2019, v. 14, n. 1, p. N.PAG, doi. 10.1186/s12263-019-0636-8

By:

Vázquez-Fresno, Rosa;
Rosana, Albert Remus R.;
Sajed, Tanvir;
Onookome-Okome, Tuviere;
Wishart, Noah A.;
Wishart, David S.

Publication type:

Article

Adsorption Dynamics of Uremic Toxins to Novel Modified Magnetic Nanoparticles.

Published in:

Macromolecular Bioscience, 2024, v. 24, n. 2, p. 1, doi. 10.1002/mabi.202300133

By:

Li, Shuhui;
Sharaf, Mehdi Ghaffari;
Zhang, Lun;
Wishart, David S.;
Tonelli, Marcello;
Unsworth, Larry D.

Publication type:

Article

The role of the Human Metabolome Database in inborn errors of metabolism.

Published in:

Journal of Inherited Metabolic Disease, 2018, v. 41, n. 3, p. 329, doi. 10.1007/s10545-018-0137-8

By:

Mandal, Rupasri;
Chamot, Danuta;
Wishart, David S.

Publication type:

Article

Current Progress in computational metabolomics.

Published in:

Briefings in Bioinformatics, 2007, v. 8, n. 5, p. 279, doi. 10.1093/bib/bbm030

By:

Wishart, David S.

Publication type:

Article

Accurate long-range forecasting of COVID-19 mortality in the USA.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-91365-2

By:

Ramazi, Pouria;
Haratian, Arezoo;
Meghdadi, Maryam;
Mari Oriyad, Arash;
Lewis, Mark A.;
Maleki, Zeinab;
Vega, Roberto;
Wang, Hao;
Wishart, David S.;
Greiner, Russell

Publication type:

Article

CpG-ODN induced antimicrobial immunity in neonatal chicks involves a substantial shift in serum metabolic profiles.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-88386-2

By:

Goonewardene, Kalhari Bandara;
Karu, Naama;
Ahmed, Khawaja Ashfaque;
Popowich, Shelly;
Chow-Lockerbie, Betty;
Ayalew, Lisanework E.;
Karunarathna, Ruwani;
Gunawardana, Thushari;
Liu, Mengying;
Tikoo, Suresh K.;
Foldvari, Marianna;
Willson, Philip;
Mandal, Rupasri;
Wishart, David S.;
Gomis, Susantha

Publication type:

Article

Using metabolomics to predict severe traumatic brain injury outcome (GOSE) at 3 and 12 months.

Published in:

Critical Care, 2023, v. 27, n. 1, p. 1, doi. 10.1186/s13054-023-04573-9

By:

Banoei, Mohammad M.;
Lee, Chel Hee;
Hutchison, James;
Panenka, William;
Wellington, Cheryl;
Wishart, David S.;
Winston, Brent W.;
Joffe, Ari;
Barlow, Karen;
Yeates, Keith;
Esser, Michael;
Winston, Brent;
Torres, Ivan;
Walley, Keith;
Silverberg, Noah;
Carrion, Priscilla;
Doan, Quynh;
Stukas, Sophie;
Vercauteren, Susan;
Panenka, Will

Publication type:

Article

The impact of methodological choices when developing predictive models using urinary metabolite data.

Published in:

Statistics in Medicine, 2022, v. 41, n. 18, p. 3511, doi. 10.1002/sim.9431

By:

Krstic, Nikolas;
Multani, Kevin;
Wishart, David S.;
Blydt‐Hansen, Tom;
Cohen Freue, Gabriela V.

Publication type:

Article