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soibean: High-Resolution Taxonomic Identification of Ancient Environmental DNA Using Mitochondrial Pangenome Graphs.
Published in:
Molecular Biology & Evolution, 2024, v. 41, n. 10, p. 1, doi. 10.1093/molbev/msae203
By:
- Vogel, Nicola Alexandra;
- Rubin, Joshua Daniel;
- Pedersen, Anders Gorm;
- Sackett, Peter Wad;
- Pedersen, Mikkel Winther;
- Renaud, Gabriel
Publication type:
Article
A 5700 year-old human genome and oral microbiome from chewed birch pitch.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-13549-9
By:
- Jensen, Theis Z. T.;
- Niemann, Jonas;
- Iversen, Katrine Højholt;
- Fotakis, Anna K.;
- Gopalakrishnan, Shyam;
- Vågene, Åshild J.;
- Pedersen, Mikkel Winther;
- Sinding, Mikkel-Holger S.;
- Ellegaard, Martin R.;
- Allentoft, Morten E.;
- Lanigan, Liam T.;
- Taurozzi, Alberto J.;
- Nielsen, Sofie Holtsmark;
- Dee, Michael W.;
- Mortensen, Martin N.;
- Christensen, Mads C.;
- Sørensen, Søren A.;
- Collins, Matthew J.;
- Gilbert, M. Thomas P.;
- Sikora, Martin
Publication type:
Article
euka : Robust tetrapodic and arthropodic taxa detection from modern and ancient environmental DNA using pangenomic reference graphs.
Published in:
Methods in Ecology & Evolution, 2023, v. 14, n. 11, p. 2717, doi. 10.1111/2041-210X.14214
By:
- Vogel, Nicola Alexandra;
- Rubin, Joshua Daniel;
- Swartz, Mikkel;
- Vlieghe, Juliette;
- Sackett, Peter Wad;
- Pedersen, Anders Gorm;
- Pedersen, Mikkel Winther;
- Renaud, Gabriel
Publication type:
Article
ngsLCA—A toolkit for fast and flexible lowest common ancestor inference and taxonomic profiling of metagenomic data.
Published in:
Methods in Ecology & Evolution, 2022, v. 13, n. 12, p. 2699, doi. 10.1111/2041-210X.14006
By:
- Wang, Yucheng;
- Korneliussen, Thorfinn Sand;
- Holman, Luke E.;
- Manica, Andrea;
- Pedersen, Mikkel Winther
Publication type:
Article
Planktonic foraminifera-derived environmental DNA extracted from abyssal sediments preserves patterns of plankton macroecology.
Published in:
Biogeosciences, 2017, v. 14, n. 11, p. 2741, doi. 10.5194/bg-14-2741-2017
By:
- Morard, Raphaël;
- Lejzerowicz, Franck;
- Darling, Kate F.;
- Lecroq-Bennet, Béatrice;
- Pedersen, Mikkel Winther;
- Orlando, Ludovic;
- Pawlowski, Jan;
- Mulitza, Stefan;
- de Vargas, Colomban;
- Kucera, Michal
Publication type:
Article
DNA evidence of bowhead whale exploitation by Greenlandic Paleo-Inuit 4,000 years ago.
Published in:
Nature Communications, 2016, v. 7, n. 11, p. 13389, doi. 10.1038/ncomms13389
By:
- Seersholm, Frederik Valeur;
- Pedersen, Mikkel Winther;
- Søe, Martin Jensen;
- Shokry, Hussein;
- Mak, Sarah Siu Tze;
- Ruter, Anthony;
- Raghavan, Maanasa;
- Fitzhugh, William;
- Kjær, Kurt H.;
- Willerslev, Eske;
- Meldgaard, Morten;
- Kapel, Christian M.O.;
- Hansen, Anders Johannes
Publication type:
Article
Plankton-derived environmental DNA extracted from abyssal sediments preserves patterns of plankton macroecology.
Published in:
Biogeosciences Discussions, 2016, p. 1, doi. 10.5194/bg-2016-486
By:
- Morard, Raphael;
- Lejzerowicz, Franck;
- Darling, Kate F.;
- Lecroq-Bennet, Beatrice;
- Winther Pedersen, Mikkel;
- Orlando, Ludovic;
- Pawlowski, Jan;
- Mulitza, Stefan;
- Vargas, Colomban d.;
- Kucera, Michal
Publication type:
Article
Ancient plant DNA in lake sediments.
Published in:
New Phytologist, 2017, v. 214, n. 3, p. 924, doi. 10.1111/nph.14470
By:
- Parducci, Laura;
- Bennett, Keith D.;
- Ficetola, Gentile Francesco;
- Alsos, Inger Greve;
- Suyama, Yoshihisa;
- Wood, Jamie R.;
- Pedersen, Mikkel Winther
Publication type:
Article
A theoretical analysis of taxonomic binning accuracy.
Published in:
Molecular Ecology Resources, 2022, v. 22, n. 6, p. 2208, doi. 10.1111/1755-0998.13608
By:
- De Sanctis, Bianca;
- Money, Daniel;
- Pedersen, Mikkel Winther;
- Durbin, Richard
Publication type:
Article
Genomic ancestry, diet and microbiomes of Upper Palaeolithic hunter-gatherers from San Teodoro cave.
Published in:
Communications Biology, 2022, v. 5, n. 1, p. 1, doi. 10.1038/s42003-022-04190-2
By:
- Scorrano, Gabriele;
- Nielsen, Sofie Holtsmark;
- Vetro, Domenico Lo;
- Sawafuji, Rikai;
- Mackie, Meaghan;
- Margaryan, Ashot;
- Fotakis, Anna K.;
- Martínez-Labarga, Cristina;
- Fabbri, Pier Francesco;
- Allentoft, Morten E.;
- Carra, Marialetizia;
- Martini, Fabio;
- Rickards, Olga;
- Olsen, Jesper V.;
- Pedersen, Mikkel Winther;
- Cappellini, Enrico;
- Sikora, Martin
Publication type:
Article

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