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A high-performance computational workflow to accelerate GATK SNP detection across a 25-genome dataset.
- Published in:
- BMC Biology, 2024, v. 22, n. 1, p. 1, doi. 10.1186/s12915-024-01820-5
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- Article
High-Quality Genome Assemblies Reveal Evolutionary Dynamics of Repetitive DNA and Structural Rearrangements in the Drosophila virilis Subgroup.
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- Genome Biology & Evolution, 2024, v. 16, n. 1, p. 1, doi. 10.1093/gbe/evad238
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- Article
Oryza glumaepatula: A wild relative to improve drought tolerance in cultivated rice.
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- Plant Physiology, 2023, v. 193, n. 4, p. 2381, doi. 10.1093/plphys/kiad485
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- Article
Genome-wide association analysis identifies natural allelic variants associated with panicle architecture variation in African rice, Oryza glaberrima Steud.
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- G3: Genes | Genomes | Genetics, 2023, v. 13, n. 10, p. 1, doi. 10.1093/g3journal/jkad174
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- Article
The International Oryza Map Alignment Project (IOMAP): the Americas—past achievements and future directions.
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- Journal of Experimental Botany, 2023, v. 74, n. 5, p. 1331, doi. 10.1093/jxb/erac490
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- Article
The gyrfalcon (Falco rusticolus) genome.
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- G3: Genes | Genomes | Genetics, 2023, v. 13, n. 3, p. 1, doi. 10.1093/g3journal/jkad001
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- Article
FrangiPANe, a tool for creating a panreference using left behind reads.
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- NAR Genomics & Bioinformatics, 2023, v. 5, n. 1, p. 1, doi. 10.1093/nargab/lqad013
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- Article
Prediction of crossover recombination using parental genomes.
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- PLoS ONE, 2023, v. 17, n. 2, p. 1, doi. 10.1371/journal.pone.0281804
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- Article
What lies behind a fruit crop variety name? A case study of the barnī date palm from al‐'Ulā oasis, Saudi Arabia.
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- Plants, People, Planet, 2023, v. 5, n. 1, p. 82, doi. 10.1002/ppp3.10326
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- Article
Full-Length Transcriptome Sequencing Reveals Alternative Splicing and lncRNA Regulation during Nodule Development in Glycine max.
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- International Journal of Molecular Sciences, 2022, v. 23, n. 13, p. 7371, doi. 10.3390/ijms23137371
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- Article
Gene fusion as an important mechanism to generate new genes in the genus Oryza.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02696-w
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- Article
Genome assembly of the JD17 soybean provides a new reference genome for comparative genomics.
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- G3: Genes | Genomes | Genetics, 2022, v. 12, n. 4, p. 1, doi. 10.1093/g3journal/jkac017
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- Article
The chromosome‐scale reference genome of safflower (Carthamus tinctorius) provides insights into linoleic acid and flavonoid biosynthesis.
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- Plant Biotechnology Journal, 2021, v. 19, n. 9, p. 1725, doi. 10.1111/pbi.13586
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- Article
Starch Synthesis-Related Genes (SSRG) Evolution in the Genus Oryza.
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- Plants (2223-7747), 2021, v. 10, n. 6, p. 1057, doi. 10.3390/plants10061057
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- Article
Author Correction: Mitochondrial plastid DNA can cause DNA barcoding paradox in plants.
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- 2021
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- Correction Notice
Evolution and diversification of reproductive phased small interfering RNAs in Oryza species.
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- New Phytologist, 2021, v. 229, n. 5, p. 2970, doi. 10.1111/nph.17035
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- Article
A chromosome‐scale assembly of allotetraploid Brassica juncea (AABB) elucidates comparative architecture of the A and B genomes.
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- Plant Biotechnology Journal, 2021, v. 19, n. 3, p. 602, doi. 10.1111/pbi.13492
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- Publication type:
- Article
A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa.
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- Genome Biology, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s13059-020-02162-5
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- Article
Potential of Platinum Standard Reference Genomes to Exploit Natural Variation in the Wild Relatives of Rice.
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- Frontiers in Plant Science, 2020, v. 11, p. N.PAG, doi. 10.3389/fpls.2020.579980
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- Article
Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K).
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- GigaScience, 2020, v. 9, n. 8, p. 1, doi. 10.1093/gigascience/giaa080
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- Article
Mitochondrial plastid DNA can cause DNA barcoding paradox in plants.
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- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-63233-y
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- Article
Evolution and Diversity of the Wild Rice Oryza officinalis Complex, across Continents, Genome Types, and Ploidy Levels.
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- Genome Biology & Evolution, 2020, v. 12, n. 4, p. 413, doi. 10.1093/gbe/evaa037
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- Article
Genome sequence of the model rice variety KitaakeX.
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- BMC Genomics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12864-019-6262-4
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- Article
Genome-wide association mapping of date palm fruit traits.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-12604-9
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- Article
Progress in single-access information systems for wheat and rice crop improvement.
- Published in:
- Briefings in Bioinformatics, 2019, v. 20, n. 2, p. 565, doi. 10.1093/bib/bby016
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- Article
Comparison of Oryza sativa and Oryza brachyantha Genomes Reveals Selection-Driven Gene Escape from the Centromeric Regions.
- Published in:
- Plant Cell, 2018, v. 30, n. 8, p. 1729, doi. 10.1105/tpc.18.00163
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- Article
Genotyping by sequencing of rice interspecific backcross inbred lines identifies QTLs for grain weight and grain length.
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- Euphytica, 2018, v. 214, n. 2, p. 1, doi. 10.1007/s10681-018-2119-1
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- Article
Sequencing of Australian wild rice genomes reveals ancestral relationships with domesticated rice.
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- Plant Biotechnology Journal, 2017, v. 15, n. 6, p. 765, doi. 10.1111/pbi.12674
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- Article
The Rice Paradox: Multiple Origins but Single Domestication in Asian Rice.
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- Molecular Biology & Evolution, 2017, v. 34, n. 4, p. 969, doi. 10.1093/molbev/msx049
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- Article
Evolutionary analysis of the SUB1 locus across the Oryza genomes.
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- Rice (19398425), 2017, v. 10, n. 1, p. 1, doi. 10.1186/s12284-016-0140-3
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- Article
Rice SNP-seek database update: new SNPs, indels, and queries.
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- Nucleic Acids Research, 2017, v. 45, n. D1, p. D1075, doi. 10.1093/nar/gkw1135
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- Article
Genome puzzle master (GPM): an integrated pipeline for building and editing pseudomolecules from fragmented sequences.
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- Bioinformatics, 2016, v. 32, n. 20, p. 3058, doi. 10.1093/bioinformatics/btw370
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- Article
DNA transposon activity is associated with increased mutation rates in genes of rice and other grasses.
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- Nature Communications, 2016, v. 7, n. 9, p. 12790, doi. 10.1038/ncomms12790
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- Article
Development and validation of cross-transferable and polymorphic DNA markers for detecting alien genome introgression in Oryza sativa from Oryza brachyantha.
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- Molecular Genetics & Genomics, 2016, v. 291, n. 4, p. 1783, doi. 10.1007/s00438-016-1214-z
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- Article
DNA methylation changes facilitated evolution of genes derived from Mutator-like transposable elements.
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- Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-0954-8
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- Article
The impact and origin of copy number variations in the Oryza species.
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- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-2589-2
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- Article
Evolution of plant genome architecture.
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- Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-0908-1
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- Article
Red clover (Trifolium pratense L.) draft genome provides a platform for trait improvement.
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- Scientific Reports, 2015, v. 5, n. 1, p. 17394, doi. 10.1038/srep17394
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- Article
Recurrent sequence exchange between homeologous grass chromosomes.
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- Plant Journal, 2015, v. 84, n. 4, p. 747, doi. 10.1111/tpj.13040
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- Article
Harvesting rice's dispensable genome.
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- Genome Biology, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s13059-015-0787-x
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- Article
Exceptional reduction of the plastid genome of saguaro cactus (Carnegiea gigantea): Loss of the ndh gene suite and inverted repeat.
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- American Journal of Botany, 2015, v. 102, n. 7, p. 1115, doi. 10.3732/ajb.1500184
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- Article
Transposons play an important role in the evolution and diversification of centromeres among closely related species.
- Published in:
- Frontiers in Plant Science, 2015, p. 1, doi. 10.3389/fpls.2015.00216
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- Publication type:
- Article
Endogenous florendoviruses are major components of plant genomes and hallmarks of virus evolution.
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- Nature Communications, 2014, v. 5, n. 11, p. 5269, doi. 10.1038/ncomms6269
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- Article
Disentangling Methodological and Biological Sources of Gene Tree Discordance on Oryza (Poaceae) Chromosome 3.
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- Systematic Biology, 2014, v. 63, n. 5, p. 645, doi. 10.1093/sysbio/syu027
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- Article
Global Genomic Diversity of Oryza sativa Varieties Revealed by Comparative Physical Mapping.
- Published in:
- Genetics, 2014, v. 196, n. 4, p. 937, doi. 10.1534/genetics.113.159970
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- Article
Comparative BAC-based physical mapping of Oryza sativa ssp. indica var. 93-11 and evaluation of the two rice reference sequence assemblies.
- Published in:
- Plant Journal, 2014, v. 77, n. 5, p. 795, doi. 10.1111/tpj.12412
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- Article
Making a living while starving in the dark: metagenomic insights into the energy dynamics of a carbonate cave.
- Published in:
- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2014, v. 8, n. 2, p. 478, doi. 10.1038/ismej.2013.159
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- Article
Genomic Resources for Gene Discovery, Functional Genome Annotation, and Evolutionary Studies of Maize and Its Close Relatives.
- Published in:
- Genetics, 2013, v. 195, n. 3, p. 723, doi. 10.1534/genetics.113.157115
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- Publication type:
- Article
BAC-end sequences analysis provides first insights into coffee ( Coffea canephora P.) genome composition and evolution.
- Published in:
- Plant Molecular Biology, 2013, v. 83, n. 3, p. 177, doi. 10.1007/s11103-013-0077-5
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- Article
Evolution of a Complex Locus for Terpene Biosynthesis in Solanum.
- Published in:
- Plant Cell, 2013, v. 25, n. 6, p. 2022, doi. 10.1105/tpc.113.111013
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- Article