Works by Winand, Raf

Results: 10

Investigating fungal diversity through metabarcoding for environmental samples: assessment of ITS1 and ITS2 Illumina sequencing using multiple defined mock communities with different classification methods and reference databases.

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-025-11917-y

By:

Winand, Raf;
D'hooge, Elizabet;
Van Uffelen, Alexander;
Bogaerts, Bert;
Van Braekel, Julien;
Hoffman, Stefan;
Roosens, Nancy H. C. J.;
Becker, Pierre;
De Keersmaecker, Sigrid C. J.;
Vanneste, Kevin

Publication type:

Article

Phylogenomic Investigation of Increasing Fluoroquinolone Resistance among Belgian Cases of Shigellosis between 2013 and 2018 Indicates Both Travel-Related Imports and Domestic Circulation.

Published in:

Microorganisms, 2021, v. 9, n. 4, p. 767, doi. 10.3390/microorganisms9040767

By:

Bogaerts, Bert;
Winand, Raf;
Van Braekel, Julien;
Mattheus, Wesley;
De Keersmaecker, Sigrid C. J.;
Roosens, Nancy H. C.;
Marchal, Kathleen;
Vanneste, Kevin;
Ceyssens, Pieter-Jan

Publication type:

Article

Methylome analysis for spina bifida shows SOX18 hypomethylation as a risk factor with evidence for a complex (epi)genetic interplay to affect neural tube development.

Published in:

Clinical Epigenetics, 2016, v. 8, p. 1, doi. 10.1186/s13148-016-0272-8

By:

Rochtus, Anne;
Winand, Raf;
Laenen, Griet;
Vangeel, Elise;
Izzi, Benedetta;
Wittevrongel, Christine;
Moreau, Yves;
Verpoorten, Carla;
Jansen, Katrien;
Van Geet, Chris;
Freson, Kathleen

Publication type:

Article

Galaxy @Sciensano: a comprehensive bioinformatics portal for genomics-based microbial typing, characterization, and outbreak detection.

Published in:

BMC Genomics, 2025, v. 26, n. 1, p. 1, doi. 10.1186/s12864-024-11182-5

By:

Bogaerts, Bert;
Van Braekel, Julien;
Van Uffelen, Alexander;
D'aes, Jolien;
Godfroid, Maxime;
Delcourt, Thomas;
Kelchtermans, Michael;
Milis, Kato;
Goeders, Nathalie;
De Keersmaecker, Sigrid C. J.;
Roosens, Nancy H. C.;
Winand, Raf;
Vanneste, Kevin

Publication type:

Article

Validation of a Bioinformatics Workflow for Routine Analysis of Whole-Genome Sequencing Data and Related Challenges for Pathogen Typing in a European National Reference Center: Neisseria meningitidis as a Proof-of-Concept.

Published in:

Frontiers in Microbiology, 2019, p. N.PAG, doi. 10.3389/fmicb.2019.00362

By:

Bogaerts, Bert;
Winand, Raf;
Fu, Qiang;
Van Braekel, Julien;
Ceyssens, Pieter-Jan;
Mattheus, Wesley;
Bertrand, Sophie;
De Keersmaecker, Sigrid C. J.;
Roosens, Nancy H. C.;
Vanneste, Kevin

Publication type:

Article

Targeting the 16S rRNA Gene for Bacterial Identification in Complex Mixed Samples: Comparative Evaluation of Second (Illumina) and Third (Oxford Nanopore Technologies) Generation Sequencing Technologies.

Published in:

International Journal of Molecular Sciences, 2020, v. 21, n. 1, p. 298, doi. 10.3390/ijms21010298

By:

Winand, Raf;
Bogaerts, Bert;
Hoffman, Stefan;
Lefevre, Loïc;
Delvoye, Maud;
Van Braekel, Julien;
Fu, Qiang;
Roosens, Nancy HC;
De Keersmaecker, Sigrid CJ;
Vanneste, Kevin

Publication type:

Article

Identification of an unauthorized genetically modified bacteria in food enzyme through whole-genome sequencing.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-63987-5

By:

Fraiture, Marie-Alice;
Bogaerts, Bert;
Winand, Raf;
Deckers, Marie;
Papazova, Nina;
Vanneste, Kevin;
De Keersmaecker, Sigrid C. J.;
Roosens, Nancy H. C.

Publication type:

Article

Combining short and long read sequencing to characterize antimicrobial resistance genes on plasmids applied to an unauthorized genetically modified Bacillus.

Published in:

Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-61158-0

By:

Berbers, Bas;
Saltykova, Assia;
Garcia-Graells, Cristina;
Philipp, Patrick;
Arella, Fabrice;
Marchal, Kathleen;
Winand, Raf;
Vanneste, Kevin;
Roosens, Nancy H. C.;
De Keersmaecker, Sigrid C. J.

Publication type:

Article

In vitro screening of embryos by whole-genome sequencing: now, in the future or never?

Published in:

Human Reproduction, 2014, v. 29, n. 4, p. 842, doi. 10.1093/humrep/deu005

By:

Winand, Raf;
Hens, Kristien;
Dondorp, Wybo;
de Wert, Guido;
Moreau, Yves;
Vermeesch, Joris Robert;
Liebaers, Inge;
Aerts, Jan

Publication type:

Article

DNA methylation analysis of Homeobox genes implicates HOXB7 hypomethylation as risk factor for neural tube defects.

Published in:

Epigenetics, 2015, v. 10, n. 1, p. 92, doi. 10.1080/15592294.2014.998531

By:

Rochtus, Anne;
Izzi, Benedetta;
Vangeel, Elise;
Louwette, Sophie;
Wittevrongel, Christine;
Lambrechts, Diether;
Moreau, Yves;
Winand, Raf;
Verpoorten, Carla;
Jansen, Katrien;
Van Geet, Chris;
Freson, Kathleen

Publication type:

Article