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Common evolutionary origins of the bacterial glycyl tRNA synthetase and alanyl tRNA synthetase.
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- Protein Science: A Publication of the Protein Society, 2024, v. 33, n. 3, p. 1, doi. 10.1002/pro.4844
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Assembly‐driven protection from hydrolysis as key selective force during chemical evolution.
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- FEBS Letters, 2023, v. 597, n. 23, p. 2879, doi. 10.1002/1873-3468.14766
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- Article
Goldilocks and RNA: where Mg<sup>2+</sup> concentration is just right.
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- Nucleic Acids Research, 2023, v. 51, n. 8, p. 3529, doi. 10.1093/nar/gkad124
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Depletion assisted hemin affinity (DAsHA) proteomics reveals an expanded landscape of heme-binding proteins in the human proteome.
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- Metallomics, 2023, v. 15, n. 3, p. 1, doi. 10.1093/mtomcs/mfad004
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rRNA expansion segment 7 in eukaryotes: from Signature Fold to tentacles.
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- Nucleic Acids Research, 2022, v. 50, n. 18, p. 10717, doi. 10.1093/nar/gkac844
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- Article
Frontiers in Prebiotic Chemistry and Early Earth Environments.
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- Origins of Life & Evolution of the Biosphere, 2022, v. 52, n. 1-3, p. 165, doi. 10.1007/s11084-022-09622-x
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Thioesters provide a plausible prebiotic path to proto-peptides.
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- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-30191-0
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Adaptation and Exaptation: From Small Molecules to Feathers.
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- Journal of Molecular Evolution, 2022, v. 90, n. 2, p. 166, doi. 10.1007/s00239-022-10049-1
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Differential Oligomerization of Alpha versus Beta Amino Acids and Hydroxy Acids in Abiotic Proto-Peptide Synthesis Reactions.
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- Life (2075-1729), 2022, v. 12, n. 2, p. N.PAG, doi. 10.3390/life12020265
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Fold Evolution before LUCA: Common Ancestry of SH3 Domains and OB Domains.
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- Molecular Biology & Evolution, 2021, v. 38, n. 11, p. 5134, doi. 10.1093/molbev/msab240
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TwinCons: Conservation score for uncovering deep sequence similarity and divergence.
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- PLoS Computational Biology, 2021, v. 17, n. 10, p. 1, doi. 10.1371/journal.pcbi.1009541
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R2DT is a framework for predicting and visualising RNA secondary structure using templates.
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- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23555-5
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- Article
Water and Life: The Medium is the Message.
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- Journal of Molecular Evolution, 2021, v. 89, n. 1/2, p. 2, doi. 10.1007/s00239-020-09978-6
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- Article
Supersized Ribosomal RNA Expansion Segments in Asgard Archaea.
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- Genome Biology & Evolution, 2020, v. 12, n. 10, p. 1694, doi. 10.1093/gbe/evaa170
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- Article
Cutting in-line with iron: ribosomal function and non-oxidative RNA cleavage.
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- Nucleic Acids Research, 2020, v. 48, n. 15, p. 8663, doi. 10.1093/nar/gkaa586
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- Article
Mutually stabilizing interactions between proto-peptides and RNA.
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- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16891-5
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- Article
Proteotoxic stress promotes entrapment of ribosomes and misfolded proteins in a shared cytosolic compartment.
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- Nucleic Acids Research, 2020, v. 48, n. 7, p. 3888, doi. 10.1093/nar/gkaa068
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- Article
Profusion of G-quadruplexes on both subunits of metazoan ribosomes.
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- PLoS ONE, 2019, v. 14, n. 12, p. 1, doi. 10.1371/journal.pone.0226177
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Folding, Assembly, and Persistence: The Essential Nature and Origins of Biopolymers.
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- Journal of Molecular Evolution, 2018, v. 86, n. 9, p. 598, doi. 10.1007/s00239-018-9876-2
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- Article
Circular Permutation Obscures Universality of a Ribosomal Protein.
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- Journal of Molecular Evolution, 2018, v. 86, n. 8, p. 581, doi. 10.1007/s00239-018-9869-1
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Translation: The Universal Structural Core of Life.
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- Molecular Biology & Evolution, 2018, v. 35, n. 8, p. 2065, doi. 10.1093/molbev/msy101
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Frozen in Time: The History of Proteins.
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- Molecular Biology & Evolution, 2017, v. 34, n. 5, p. 1252, doi. 10.1093/molbev/msx086
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- Article
Iron mediates catalysis of nucleic acid processing enzymes: support for Fe(II) as a cofactor before the great oxidation event.
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- Nucleic Acids Research, 2017, v. 45, n. 7, p. 3634, doi. 10.1093/nar/gkx171
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Functional RNAs: combined assembly and packaging in VLPs.
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- Nucleic Acids Research, 2017, v. 45, n. 6, p. 3519, doi. 10.1093/nar/gkw1154
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Conservation of estrogen receptor function in invertebrate reproduction.
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- BMC Evolutionary Biology, 2017, v. 17, p. 1, doi. 10.1186/s12862-017-0909-z
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Ribosomal small subunit domains radiate from a central core.
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- Scientific Reports, 2016, p. 20885, doi. 10.1038/srep20885
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Specific minor groove solvation is a crucial determinant of DNA binding site recognition.
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- Nucleic Acids Research, 2014, v. 42, n. 22, p. 14053, doi. 10.1093/nar/gku1259
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- Article
Secondary Structures of rRNAs from All Three Domains of Life.
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- PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0088222
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Secondary structure and domain architecture of the 23S and 5S rRNAs.
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- Nucleic Acids Research, 2013, v. 41, n. 15, p. 7522, doi. 10.1093/nar/gkt513
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RNA with iron(II) as a cofactor catalyses electron transfer.
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- Nature Chemistry, 2013, v. 5, n. 6, p. 525, doi. 10.1038/nchem.1649
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Molecular paleontology: a biochemical model of the ancestral ribosome.
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- Nucleic Acids Research, 2013, v. 41, n. 5, p. 3373, doi. 10.1093/nar/gkt023
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In Vitro Secondary Structure of the Genomic RNA of Satellite Tobacco Mosaic Virus.
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- PLoS ONE, 2013, v. 8, n. 1, p. 1, doi. 10.1371/journal.pone.0054384
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- Article
Nonenzymatic Ligation of DNA with a Reversible Step and a Final Linkage that Can Be Used in PCR.
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- ChemBioChem, 2012, v. 13, n. 8, p. 1121, doi. 10.1002/cbic.201200167
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- Article
RNA Folding and Catalysis Mediated by Iron (II).
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- PLoS ONE, 2012, v. 7, n. 5, p. 1, doi. 10.1371/journal.pone.0038024
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- Article
B-DNA structure is intrinsically polymorphic: even at the level of base pair positions.
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- Nucleic Acids Research, 2012, v. 40, n. 8, p. 3714, doi. 10.1093/nar/gkr1168
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Molecular Recognition of Watson-Crick-Like Purine-Purine Base Pairs.
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- ChemBioChem, 2011, v. 12, n. 14, p. 2155, doi. 10.1002/cbic.201100375
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The phosphate clamp: a small and independent motif for nucleic acid backbone recognition.
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- Nucleic Acids Research, 2011, v. 39, n. 1, p. 325, doi. 10.1093/nar/gkq723
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Peeling the Onion: Ribosomes Are Ancient Molecular Fossils.
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- Molecular Biology & Evolution, 2009, v. 26, n. 11, p. 2415, doi. 10.1093/molbev/msp163
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A recurrent magnesium-binding motif provides a framework for the ribosomal peptidyl transferase center.
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- Nucleic Acids Research, 2009, v. 37, n. 10, p. 3134, doi. 10.1093/nar/gkp119
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Finding 3D motifs in ribosomal RNA structures.
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- Nucleic Acids Research, 2009, v. 37, n. 4, p. e29
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Single nucleotide RNA choreography.
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- Nucleic Acids Research, 2006, v. 34, n. 5, p. 1481, doi. 10.1093/nar/gkj500
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Automated identification of RNA conformational motifs: theory and application to the HM LSU 23S rRNA.
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- Nucleic Acids Research, 2003, v. 31, n. 21, p. 6249, doi. 10.1093/nar/gkg835
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Surprising roles of electrostatic interactions in DNA-ligand complexes.
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- Biopolymers, 2003, v. 69, n. 1, p. 87, doi. 10.1002/bip.10319
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The role of minor groove functional groups in DNA hydration.
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- Nucleic Acids Research, 2003, v. 31, n. 5, p. 1536, doi. 10.1093/nar/gkg240
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- Article
Effect of a neutralized phosphate backbone on the minor groove of B‐DNA: molecular dynamics simulation studies.
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- Nucleic Acids Research, 2002, v. 30, n. 16, p. 3615, doi. 10.1093/nar/gkf472
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- Article
Clathrate hydrates are poor models of biomolecule hydration.
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- Biopolymers, 1996, v. 38, n. 2, p. 177, doi. 10.1002/(SICI)1097-0282(199602)38:2<177::AID-BIP4>3.0.CO;2-S
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The hydrogen bonding of cytosine with guanine: Calorimetric and.
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- Biopolymers, 1987, v. 26, n. 4, p. 591, doi. 10.1002/bip.360260411
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- Article