Works by Wiley, Graham

Results: 31

Sorghum Genome Sequencing by Methylation Filtration.

Published in:

PLoS Biology, 2005, v. 3, n. 1, p. 1, doi. 10.1371/journal.pbio.0030013

By:

Bedell, Joseph A;
Budiman, Muhammad A;
Nunberg, Andrew;
Citek, Robert W;
Robbins, Dan;
Jones, Joshua;
Flick, Elizabeth;
Rohlfing, Theresa;
Fries, Jason;
Bradford, Kourtney;
McMenamy, Jennifer;
Smith, Michael;
Holeman, Heather;
Roe, Bruce A;
Wiley, Graham;
Korf, Ian F;
Rabinowicz, Pablo D;
Lakey, Nathan;
McCombie, W. Richard;
Jeddeloh, Jeffrey A

Publication type:

Article

Sorghum Genome Sequencing by Methylation Filtration.

Published in:

PLoS Biology, 2005, v. 3, n. 1, p. 103, doi. 10.1371/journal.pbio.0030013

By:

Bedell, Joseph A.;
Budiman, Muhammad A.;
Nunberg, Andrew;
Citek, Robert W.;
Robbins, Dan;
Jones, Joshua;
Flick, Elizabeth;
Rohlfing, Theresa;
Fries, Jason;
Bradford, Kourtney;
McMenamy, Jennifer;
Smith, Michael;
Holeman, Heather;
Roe, Bruce A.;
Wiley, Graham;
Korf, Ian F.;
Rabinowicz, Pablo D.;
Lakey, Nathan;
McCombie, W. Richard;
Jeddeloh, Jeffrey A.

Publication type:

Article

Encore: Genetic Association Interaction Network Centrality Pipeline and Application to SLE Exome Data.

Published in:

Genetic Epidemiology, 2013, v. 37, n. 6, p. 614, doi. 10.1002/gepi.21739

By:

Davis, Nicholas A.;
Lareau, Caleb A.;
White, Bill C.;
Pandey, Ahwan;
Wiley, Graham;
Montgomery, Courtney G.;
Gaffney, Patrick M.;
McKinney, B. A.

Publication type:

Article

Identification and replication of RNA-Seq gene network modules associated with depression severity.

Published in:

Translational Psychiatry, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41398-018-0234-3

By:

Le, Trang T.;
Savitz, Jonathan;
Suzuki, Hideo;
Misaki, Masaya;
Teague, T. Kent;
White, Bill C.;
Marino, Julie H.;
Wiley, Graham;
Gaffney, Patrick M.;
Drevets, Wayne C.;
McKinney, Brett A.;
Bodurka, Jerzy

Publication type:

Article

Association of a functional variant downstream of TNFAIP3 with systemic lupus erythematosus.

Published in:

Nature Genetics, 2011, v. 43, n. 3, p. 253, doi. 10.1038/ng.766

By:

Adrianto, Indra;
Feng Wen;
Templeton, Amanda;
Wiley, Graham;
King, Jarrod B.;
Lessard, Christopher J.;
Bates, Jared S.;
Yanqing Hu;
Kelly, Jennifer A.;
Kaufman, Kenneth M.;
Guthridge, Joel M.;
Alarcón-Riquelme, Marta E.;
Anaya, Juan-Manuel;
Sang-Cheol Bae;
So-Young Bang;
Boackle, Susan A.;
Brown, Elizabeth E.;
Petri, Michelle A.;
Gallant, Caroline;
Ramsey-Goldman, Rosalind

Publication type:

Article

An Enhancer Element Harboring Variants Associated with Systemic Lupus Erythematosus Engages the <i>TNFAIP3</i> Promoter to Influence A20 Expression.

Published in:

PLoS Genetics, 2013, v. 9, n. 9, p. 1, doi. 10.1371/journal.pgen.1003750

By:

Wang, Shaofeng;
Wen, Feng;
Wiley, Graham B.;
Kinter, Michael T.;
Gaffney, Patrick M.

Publication type:

Article

Correction: Identification and replication of RNA-Seq gene network modules associated with depression severity.

Published in:

2020

By:

Le, Trang T.;
Savitz, Jonathan;
Suzuki, Hideo;
Misaki, Masaya;
Teague, T. Kent;
White, Bill C.;
Marino, Julie H.;
Wiley, Graham;
Gaffney, Patrick M.;
Drevets, Wayne C.;
McKinney, Brett A.;
Bodurka, Jerzy

Publication type:

Correction Notice

Methylated and unmethylated epialleles support variegated epigenetic silencing in Friedreich ataxia.

Published in:

Human Molecular Genetics, 2020, v. 29, n. 23, p. 3818, doi. 10.1093/hmg/ddaa267

By:

Rodden, Layne N;
Chutake, Yogesh K;
Gilliam, Kaitlyn;
Lam, Christina;
Soragni, Elisabetta;
Hauser, Lauren;
Gilliam, Matthew;
Wiley, Graham;
Anderson, Michael P;
Gottesfeld, Joel M;
Lynch, David R;
Bidichandani, Sanjay I

Publication type:

Article

A Highly Contiguous Genome for the Golden-Fronted Woodpecker (Melanerpes aurifrons) via Hybrid Oxford Nanopore and Short Read Assembly.

Published in:

G3: Genes | Genomes | Genetics, 2020, v. 10, n. 6, p. 1829, doi. 10.1534/g3.120.401059

By:

Wiley, Graham;
Miller, Matthew J.

Publication type:

Article

Association of IFIH1 and pro-inflammatory mediators: Potential new clues in SLE-associated pathogenesis.

Published in:

PLoS ONE, 2017, v. 12, n. 2, p. 1, doi. 10.1371/journal.pone.0171193

By:

Munroe, Melissa E.;
Pezant, Nathan;
Brown, Michael A.;
Fife, Dustin A.;
Guthridge, Joel M.;
Kelly, Jennifer A.;
Wiley, Graham;
Gaffney, Patrick M.;
James, Judith A.;
Montgomery, Courtney G.

Publication type:

Article

Optimized monoclonal antibody treatment against ELTD1 for GBM in a G55 xenograft mouse model.

Published in:

Journal of Cellular & Molecular Medicine, 2020, v. 24, n. 2, p. 1738, doi. 10.1111/jcmm.14867

By:

Zalles, Michelle;
Smith, Nataliya;
Ziegler, Jadith;
Saunders, Debra;
Remerowski, Shannon;
Thomas, Lincy;
Gulej, Rafal;
Mamedova, Nadya;
Lerner, Megan;
Fung, Kar‐Ming;
Chung, Junho;
Hwang, Kyusang;
Jin, Junyeong;
Wiley, Graham;
Brown, Chase;
Battiste, James;
Wren, Jonathan D.;
Towner, Rheal A.

Publication type:

Article

Variants on the UBE2L3/YDJC Autoimmune Disease Risk Haplotype Increase UBE2L3 Expression by Modulating CCCTC‐Binding Factor and YY1 Binding.

Published in:

Arthritis & Rheumatology, 2022, v. 74, n. 1, p. 163, doi. 10.1002/art.41925

By:

Gopalakrishnan, Jaanam;
Tessneer, Kandice L.;
Fu, Yao;
Pasula, Satish;
Pelikan, Richard C.;
Kelly, Jennifer A.;
Wiley, Graham B.;
Gaffney, Patrick M.

Publication type:

Article

Role of Systemic Lupus Erythematosus Risk Variants With Opposing Functional Effects as a Driver of Hypomorphic Expression of TNIP1 and Other Genes Within a Three‐Dimensional Chromatin Network.

Published in:

Arthritis & Rheumatology, 2020, v. 72, n. 5, p. 780, doi. 10.1002/art.41188

By:

Pasula, Satish;
Tessneer, Kandice L.;
Fu, Yao;
Gopalakrishnan, Jaanam;
Pelikan, Richard C.;
Kelly, Jennifer A.;
Wiley, Graham B.;
Wiley, Mandi M.;
Gaffney, Patrick M.

Publication type:

Article

Disease Mechanisms in Rheumatology-Tools and Pathways: Defining Functional Genetic Variants in Autoimmune Diseases.

Published in:

Arthritis & Rheumatology, 2015, v. 67, n. 1, p. 1, doi. 10.1002/art.38800

By:

Wang, Shaofeng;
Wiley, Graham B.;
Kelly, Jennifer A.;
Gaffney, Patrick M.

Publication type:

Article

Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families.

Published in:

New Phytologist, 2009, v. 184, n. 1, p. 85, doi. 10.1111/j.1469-8137.2009.02915.x

By:

Jagadeeswaran, Guru;
Yun Zheng;
Yong-Fang Li;
Shukla, Lata I.;
Matts, Jessica;
Hoyt, Peter;
Macmil, Simone L.;
Wiley, Graham B.;
Roe, Bruce A.;
Weixiong Zhang;
Sunkar, Ramanjulu

Publication type:

Article

Forward Genetic Screening Identifies a Small Molecule That Blocks <i>Toxoplasma gondii</i> Growth by Inhibiting Both Host- and Parasite-Encoded Kinases.

Published in:

PLoS Pathogens, 2014, v. 10, n. 6, p. 1, doi. 10.1371/journal.ppat.1004180

By:

Brown, Kevin M.;
Suvorova, Elena;
Farrell, Andrew;
McLain, Aaron;
Dittmar, Ashley;
Wiley, Graham B.;
Marth, Gabor;
Gaffney, Patrick M.;
Gubbels, Marc Jan;
White, Michael;
Blader, Ira J.

Publication type:

Article

Spatial transcriptomic analysis reveals inflammatory foci defined by senescent cells in the white matter, hippocampi and cortical grey matter in the aged mouse brain.

Published in:

GeroScience, 2022, v. 44, n. 2, p. 661, doi. 10.1007/s11357-022-00521-7

By:

Kiss, Tamas;
Nyúl-Tóth, Ádám;
DelFavero, Jordan;
Balasubramanian, Priya;
Tarantini, Stefano;
Faakye, Janet;
Gulej, Rafal;
Ahire, Chetan;
Ungvari, Anna;
Yabluchanskiy, Andriy;
Wiley, Graham;
Garman, Lori;
Ungvari, Zoltan;
Csiszar, Anna

Publication type:

Article

Single-cell RNA sequencing identifies senescent cerebromicrovascular endothelial cells in the aged mouse brain.

Published in:

GeroScience, 2020, v. 42, n. 2, p. 429, doi. 10.1007/s11357-020-00177-1

By:

Kiss, Tamas;
Nyúl-Tóth, Ádám;
Balasubramanian, Priya;
Tarantini, Stefano;
Ahire, Chetan;
DelFavero, Jordan;
Yabluchanskiy, Andriy;
Csipo, Tamas;
Farkas, Eszter;
Wiley, Graham;
Garman, Lori;
Csiszar, Anna;
Ungvari, Zoltan

Publication type:

Article

Cardiac autoantibodies promote a fibrotic transcriptome and reduced ventricular recovery in human myocarditis.

Published in:

Frontiers in Immunology, 2025, p. 1, doi. 10.3389/fimmu.2025.1500909

By:

Myers, Jennifer M.;
Sandel, Clayton;
Alvarez, Kathy;
Garman, Lori;
Wiley, Graham;
Montgomery, Courtney;
Gaffney, Patrick;
Stavrakis, Stavros;
Fairweather, DeLisa;
Bruno, Katelyn A.;
Zhao, Yan Daniel;
Cooper, Leslie T.;
Cunningham, Madeleine W.

Publication type:

Article

Use of next-generation DNA sequencing to analyze genetic variants in rheumatic disease.

Published in:

Arthritis Research & Therapy, 2014, v. 16, n. 6, p. 490, doi. 10.1186/s13075-014-0490-4

By:

Wiley, Graham B;
Kelly, Jennifer A;
Gaffney, Patrick M

Publication type:

Article

Ecogenomics: using massively parallel pyrosequencing to understand virus ecology.

Published in:

Molecular Ecology, 2010, v. 19, p. 81, doi. 10.1111/j.1365-294X.2009.04470.x

By:

ROOSSINCK, MARILYN J.;
SAHA, PRASENJIT;
WILEY, GRAHAM B.;
JIAXI QUAN;
WHITE, JAMES D.;
LAI, HONGSHING;
CHAVARRÍA, FELIPE;
GUOAN SHEN;
ROE, BRUCE A.

Publication type:

Article

Enhancer histone-QTLs are enriched on autoimmune risk haplotypes and influence gene expression within chromatin networks.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-05328-9

By:

Pelikan, Richard C.;
Kelly, Jennifer A.;
Fu, Yao;
Lareau, Caleb A.;
Tessneer, Kandice L.;
Wiley, Graham B.;
Wiley, Mandi M.;
Glenn, Stuart B.;
Harley, John B.;
Guthridge, Joel M.;
James, Judith A.;
Aryee, Martin J.;
Montgomery, Courtney;
Gaffney, Patrick M.

Publication type:

Article

BAC-Pool Sequencing and Analysis of Large Segments of A12 and D12 Homoeologous Chromosomes in Upland Cotton.

Published in:

PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0076757

By:

Buyyarapu, Ramesh;
Kantety, Ramesh V.;
Yu, John Z.;
Xu, Zhanyou;
Kohel, Russell J.;
Percy, Richard G.;
Macmil, Simone;
Wiley, Graham B.;
Roe, Bruce A.;
Sharma, Govind C.

Publication type:

Article

Genome-Wide DNA Methylation Maps in Follicular Lymphoma Cells Determined by Methylation-Enriched Bisulfite Sequencing.

Published in:

PLoS ONE, 2010, v. 5, n. 9, p. 1, doi. 10.1371/journal.pone.0013020

By:

Jeong-Hyeon Choi;
Yajun Li;
Juyuan Guo;
Lirong Pei;
Rauch, Tibor A.;
Kramer, Robin S.;
Macmil, Simone L.;
Wiley, Graham B.;
Bennett, Lynda B.;
Schnabel, Jennifer L.;
Taylor, Kristen H.;
Sun Kim;
Dong Xu;
Sreekumar, Arun;
Pfeifer, Gerd P.;
Roe, Bruce A.;
Caldwell, Charles W.;
Bhalla, Kapil N.;
Huidong Shi

Publication type:

Article

Phylotyping and Functional Analysis of Two Ancient Human Microbiomes.

Published in:

PLoS ONE, 2008, v. 3, n. 11, p. 1, doi. 10.1371/journal.pone.0003703

By:

Tito, Raúl Y.;
Macmil, Simone;
Wiley, Graham;
Najar, Fares;
Cleeland, Lauren;
Chunmei Qu;
Ping Wang;
Romagne, Frederic;
Leonard, Sylvain;
Ruiz, Agustín Jiménez;
Reinhard, Karl;
Roe, Bruce A.;
Lewis Jr., Cecil M.

Publication type:

Article

Regulatory polymorphisms modulate the expression of HLA class II molecules and promote autoimmunity.

Published in:

eLife, 2016, p. 1, doi. 10.7554/eLife.12089

By:

Raj, Prithvi;
Rai, Ekta;
Song, Ran;
Khan, Shaheen;
Wakeland, Benjamin E.;
Viswanathan, Kasthuribai;
Arana, Carlos;
Chaoying Liang;
Bo Zhang;
Dozmorov, Igor;
Carr-Johnson, Ferdicia;
Mitrovic, Mitja;
Wiley, Graham B.;
Kelly, Jennifer A.;
Lauwerys, Bernard R.;
Olsen, Nancy J.;
Cotsapas, Chris;
Garcia, Christine K.;
Wise, Carol A.;
Harley, John B.

Publication type:

Article

COMMD10 Is Essential for Neural Plate Development during Embryogenesis.

Published in:

Journal of Developmental Biology, 2023, v. 11, n. 1, p. 13, doi. 10.3390/jdb11010013

By:

Phan, Khanh P.;
Pelargos, Panayiotis;
Tsytsykova, Alla V.;
Tsitsikov, Erdyni N.;
Wiley, Graham;
Li, Chuang;
Bebak, Melissa;
Dunn, Ian F.

Publication type:

Article

Allelic heterogeneity in NCF2 associated with systemic lupus erythematosus (SLE) susceptibility across four ethnic populations.

Published in:

Human Molecular Genetics, 2014, v. 23, n. 6, p. 1656

By:

Kim-Howard, Xana;
Sun, Celi;
Molineros, Julio E.;
Maiti, Amit K.;
Chandru, Hema;
Adler, Adam;
Wiley, Graham B.;
Kaufman, Kenneth M.;
Kottyan, Leah;
Guthridge, Joel M.;
Rasmussen, Astrid;
Kelly, Jennifer;
Sánchez, Elena;
Raj, Prithvi;
Li, Quan-Zhen;
Bang, So-Young;
Lee, Hye-Soon;
Kim, Tae-Hwan;
Kang, Young Mo;
Suh, Chang-Hee

Publication type:

Article

Microcollinearity between autopolyploid sugarcane and diploid sorghum genomes.

Published in:

BMC Genomics, 2010, v. 11, p. 261, doi. 10.1186/1471-2164-11-261

By:

Jianping Wang;
Roe, Bruce;
Macmil, Simone;
Qingyi Yu;
Murray, Jan E.;
Tang, Haibao;
Cuixia Chen;
Najar, Fares;
Wiley, Graham;
Bowers, John;
Van Sluys, Marie-Anne;
Rokhsar, Daniel S.;
Hudson, Matthew E.;
Moose, Stephen P.;
Paterson, Andrew H.;
Ming, Ray

Publication type:

Article

Cloning, characterization and expression analysis of porcine microRNAs.

Published in:

BMC Genomics, 2009, v. 10, p. 1, doi. 10.1186/1471-2164-10-65

By:

Reddy, Alavala Matta;
Yun Zheng;
Jagadeeswaran, Guru;
Macmil, Simone L.;
Graham, Wiley B.;
Roe, Bruce A.;
Desilva, Udaya;
Weixiong Zhang;
Sunkar, Ramanjulu

Publication type:

Article

The genome of the versatile nitrogen fixer Azorhizobium caulinodans ORS571.

Published in:

BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-271

By:

Lee, Kyung-Bum;
De Backer, Philippe;
Aono, Toshihiro;
Chi-Te Liu;
Suzuki, Shino;
Suzuki, Tadahiro;
Kaneko, Takakazu;
Yamada, Manabu;
Tabata, Satoshi;
Kupfer, Doris M.;
Najar, Fares Z.;
Wiley, Graham B.;
Roe, Bruce;
Binnewies, Tim T.;
Ussery, David W.;
D'Haeze, Wim;
Den Herder, Jeroen;
Gevers, Dirk;
Vereecke, Danny;
Holsters, Marcelle

Publication type:

Article