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The importance of the lexicon in tagging biological text.
- Published in:
- Natural Language Engineering, 2006, v. 12, n. 4, p. 335, doi. 10.1017/S1351324905003967
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- Publication type:
- Article
Finding related sentence pairs in MEDLINE.
- Published in:
- Information Retrieval Journal, 2010, v. 13, n. 6, p. 601, doi. 10.1007/s10791-010-9126-8
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- Publication type:
- Article
Evaluation of query expansion using MeSH in PubMed.
- Published in:
- Information Retrieval Journal, 2009, v. 12, n. 1, p. 69, doi. 10.1007/s10791-008-9074-8
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- Publication type:
- Article
Syntactic sentence compression in the biomedical domain: facilitating access to related articles.
- Published in:
- Information Retrieval Journal, 2007, v. 10, n. 4/5, p. 393, doi. 10.1007/s10791-007-9029-5
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- Publication type:
- Article
SplicePort—An interactive splice-site analysis tool.
- Published in:
- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W285, doi. 10.1093/nar/gkm407
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- Publication type:
- Article
MedCPT: Contrastive Pre-trained Transformers with large-scale PubMed search logs for zero-shot biomedical information retrieval.
- Published in:
- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad651
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- Publication type:
- Article
Corpus-based statistical screening for phrase identification.
- Published in:
- 2000
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- Publication type:
- journal article
Thematic clustering of text documents using an EM-based approach.
- Published in:
- Journal of Biomedical Semantics, 2012, v. 3, n. Suppl 3, p. 1, doi. 10.1186/2041-1480-3-S3-S6
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- Publication type:
- Article
Finding biomedical categories in Medline.
- Published in:
- Journal of Biomedical Semantics, 2012, v. 3, n. Suppl 3, p. 1, doi. 10.1186/2041-1480-3-S3-S3
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- Publication type:
- Article
PubMed Text Similarity Model and its application to curation efforts in the Conserved Domain Database.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz064
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- Publication type:
- Article
A Field Sensor: computing the composition and intent of PubMed queries.
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- Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay052
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- Publication type:
- Article
The BioC-BioGRID corpus: full text articles annotated for curation of protein-protein and genetic interactions.
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- Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/baw147
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- Publication type:
- Article
BioC viewer: a web-based tool for displaying and merging annotations in BioC.
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- Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw106
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- Publication type:
- Article
BioC implementations in Go, Perl, Python and Ruby.
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- Database: The Journal of Biological Databases & Curation, 2014, v. 2014, p. 1, doi. 10.1093/database/bau059
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- Publication type:
- Article
Assisting manual literature curation for protein–protein interactions using BioQRator.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2014, v. 2014, p. 1, doi. 10.1093/database/bau067
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- Publication type:
- Article
BioC interoperability track overview.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2014, v. 2014, p. 1, doi. 10.1093/database/bau053
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- Publication type:
- Article
BioCreative-IV virtual issue.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2014, v. 2014, p. 1, doi. 10.1093/database/bau039
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- Publication type:
- Article
Finding abbreviations in biomedical literature: three BioC-compatible modules and four BioC-formatted corpora.
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- Database: The Journal of Biological Databases & Curation, 2014, v. 2014, p. 1, doi. 10.1093/database/bau044
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- Publication type:
- Article
BioC: a minimalist approach to interoperability for biomedical text processing.
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- Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bat064
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- Publication type:
- Article
An overview of the BioCreative 2012 Workshop Track III: interactive text mining task.
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- Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bas056
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- Publication type:
- Article
Prioritizing PubMed articles for the Comparative Toxicogenomic Database utilizing semantic information.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1, doi. 10.1093/database/bas042
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- Publication type:
- Article
Improving links between literature and biological data with text mining: a case study with GEO, PDB and MEDLINE.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2012, v. 2012, p. 1
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- Publication type:
- Article
BioCreative-2012 Virtual Issue.
- Published in:
- 2012
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- Publication type:
- Editorial
Optimizing graph-based patterns to extract biomedical events from the literature.
- Published in:
- BMC Bioinformatics, 2015, v. 16, p. 1, doi. 10.1186/1471-2105-16-S16-S2
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- Publication type:
- Article
Identifying named entities from PubMed® for enriching semantic categories.
- Published in:
- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0487-2
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- Publication type:
- Article
Identifying named entities from PubMed for enriching semantic categories.
- Published in:
- BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0487-2
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- Publication type:
- Article
Classifying protein-protein interaction articles using word and syntactic features.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. Suppl 8, p. 1, doi. 10.1186/1471-2105-12-S8-S9
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- Publication type:
- Article
The Protein-Protein Interaction tasks of BioCreative III: classification/ranking of articles and linking bio-ontology concepts to full text.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. Suppl 8, p. 1, doi. 10.1186/1471-2105-12-S8-S3
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- Publication type:
- Article
Overview of the BioCreative III Workshop.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. Suppl 8, p. 1, doi. 10.1186/1471-2105-12-S8-S1
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- Publication type:
- Article
Machine learning with naturally labeled data for identifying abbreviation definitions.
- Published in:
- BMC Bioinformatics, 2011, v. 12, p. 1, doi. 10.1186/1471-2105-12-S3-S6
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- Publication type:
- Article
Improving a gold standard: treating human relevance judgments of MEDLINE document pairs.
- Published in:
- BMC Bioinformatics, 2011, v. 12, p. 1, doi. 10.1186/1471-2105-12-S3-S5
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- Publication type:
- Article
PubMed related articles: a probabilistic topic-based model for content similarity.
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. 423, doi. 10.1186/1471-2105-8-423
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- Publication type:
- Article
Features generated for computational splice-site prediction correspond to functional elements.
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. 410, doi. 10.1186/1471-2105-8-410
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- Publication type:
- Article
New directions in biomedical text annotation: definitions, guidelines and corpus construction.
- Published in:
- BMC Bioinformatics, 2006, v. 7, p. 356, doi. 10.1186/1471-2105-7-356
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- Publication type:
- Article
GENETAG: a tagged corpus for gene/protein named entity recognition.
- Published in:
- BMC Bioinformatics, 2005, v. 6, p. S3, doi. 10.1186/1471-2105-6-S1-S3
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- Publication type:
- Article
The statistics of unique native states for random peptides.
- Published in:
- Biopolymers, 1996, v. 38, n. 4, p. 447, doi. 10.1002/(SICI)1097-0282(199604)38:4<447::AID-BIP2>3.0.CO;2-T
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- Publication type:
- Article
Better synonyms for enriching biomedical search.
- Published in:
- 2020
- By:
- Publication type:
- journal article
Evaluating relevance ranking strategies for MEDLINE retrieval.
- Published in:
- 2009
- By:
- Publication type:
- journal article
Evaluating Relevance Ranking Strategies for MEDLINE Retrieval.
- Published in:
- Journal of the American Medical Informatics Association, 2009, v. 16, n. 1, p. 32
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- Publication type:
- Article
Optimal Training Sets for Bayesian Prediction of MeSH Assignment.
- Published in:
- Journal of the American Medical Informatics Association, 2008, v. 15, n. 4, p. 546, doi. 10.1197/jamia.M2431
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- Publication type:
- Article
Deep learning with sentence embeddings pre-trained on biomedical corpora improves the performance of finding similar sentences in electronic medical records.
- Published in:
- 2020
- By:
- Publication type:
- journal article
How to Get the Most out of Your Curation Effort.
- Published in:
- PLoS Computational Biology, 2009, v. 5, n. 5, p. 1, doi. 10.1371/journal.pcbi.1000391
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- Publication type:
- Article
Author Name Disambiguation for PubMed.
- Published in:
- 2014
- By:
- Publication type:
- Journal Article
Tagging gene and protein names in biomedical text.
- Published in:
- Bioinformatics, 2002, v. 18, n. 8, p. 1124, doi. 10.1093/bioinformatics/18.8.1124
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- Publication type:
- Article
LitSense: making sense of biomedical literature at sentence level.
- Published in:
- Nucleic Acids Research, 2019, v. 47, n. W1, p. W594, doi. 10.1093/nar/gkz289
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- Publication type:
- Article
Discovering themes in biomedical literature using a projection-based algorithm.
- Published in:
- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2240-0
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- Publication type:
- Article
GENERATION OF A LARGE GENE/PROTEIN LEXICON BY MORPHOLOGICAL PATTERN ANALYSIS.
- Published in:
- Journal of Bioinformatics & Computational Biology, 2004, v. 1, n. 4, p. 611, doi. 10.1142/S0219720004000399
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- Publication type:
- Article
Meshable: searching PubMed abstracts by utilizing MeSH and MeSH-derived topical terms.
- Published in:
- Bioinformatics, 2016, v. 32, n. 19, p. 3044, doi. 10.1093/bioinformatics/btw331
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- Publication type:
- Article
Meshable: searching PubMed abstracts by utilizing MeSH and MeSH-derived topical terms.
- Published in:
- Bioinformatics, 2015, v. 31, n. 19, p. 3044, doi. 10.1093/bioinformatics/btw331
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- Publication type:
- Article
Retro: concept-based clustering of biomedical topical sets.
- Published in:
- Bioinformatics, 2014, v. 30, n. 22, p. 3240, doi. 10.1093/bioinformatics/btu514
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- Publication type:
- Article