Works by Wiebenga, Ad

Results: 16

Aspergillus niger RhaR, a regulator involved in l-rhamnose release and catabolism.

Published in:

Applied Microbiology & Biotechnology, 2014, v. 98, n. 12, p. 5531, doi. 10.1007/s00253-014-5607-9

By:

Gruben, Birgit;
Zhou, Miaomiao;
Wiebenga, Ad;
Ballering, Joost;
Overkamp, Karin;
Punt, Peter;
Vries, Ronald

Publication type:

Article

Comparative genomics reveals high biological diversity and specific adaptations in the industrially and medically important fungal genus Aspergillus.

Published in:

Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1151-0

By:

de Vries, Ronald P.;
Riley, Robert;
Wiebenga, Ad;
Aguilar-Osorio, Guillermo;
Amillis, Sotiris;
Akemi Uchima, Cristiane;
Anderluh, Gregor;
Asadollahi, Mojtaba;
Askin, Marion;
Barry, Kerrie;
Battaglia, Evy;
Bayram, Özgür;
Benocci, Tiziano;
Braus-Stromeyer, Susanna A.;
Caldana, Camila;
Cánovas, David;
Cerqueira, Gustavo C.;
Fusheng Chen;
Wanping Chen;
Cindy Choi

Publication type:

Article

Transcriptome analysis of Aspergillus niger xlnR and xkiA mutants grown on corn Stover and soybean hulls reveals a highly complex regulatory network.

Published in:

BMC Genomics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12864-019-6235-7

By:

Khosravi, Claire;
Kowalczyk, Joanna E.;
Chroumpi, Tania;
Battaglia, Evy;
Aguilar Pontes, Maria-Victoria;
Peng, Mao;
Wiebenga, Ad;
Ng, Vivian;
Lipzen, Anna;
He, Guifen;
Bauer, Diane;
Grigoriev, Igor V.;
de Vries, Ronald P.

Publication type:

Article

Comparative Genomics and Transcriptomics Analyses Reveal Divergent Plant Biomass-Degrading Strategies in Fungi.

Published in:

Journal of Fungi, 2023, v. 9, n. 8, p. 860, doi. 10.3390/jof9080860

By:

Li, Jiajia;
Wiebenga, Ad;
Lipzen, Anna;
Ng, Vivian;
Tejomurthula, Sravanthi;
Zhang, Yu;
Grigoriev, Igor V.;
Peng, Mao;
de Vries, Ronald P.

Publication type:

Article

Colonies of the fungus Aspergillus niger are highly differentiated to adapt to local carbon source variation.

Published in:

Environmental Microbiology, 2020, v. 22, n. 3, p. 1154, doi. 10.1111/1462-2920.14907

By:

Daly, Paul;
Peng, Mao;
Mitchell, Hugh D.;
Kim, Young‐Mo;
Ansong, Charles;
Brewer, Heather;
Gijsel, Peter;
Lipton, Mary S.;
Markillie, Lye Meng;
Nicora, Carrie D.;
Orr, Galya;
Wiebenga, Ad;
Hildén, Kristiina S.;
Kabel, Mirjam A.;
Baker, Scott E.;
Mäkelä, Miia R.;
Vries, Ronald P.

Publication type:

Article

High resolution visualization and exo-proteomics reveal the physiological role of XlnR and AraR in plant biomass colonization and degradation by Aspergillus niger.

Published in:

Environmental Microbiology, 2017, v. 19, n. 11, p. 4587, doi. 10.1111/1462-2920.13923

By:

Kowalczyk, Joanna E.;
Khosravi, Claire;
Purvine, Samuel;
Dohnalkova, Alice;
Chrisler, William B.;
Orr, Galya;
Robinson, Errol;
Zink, Erika;
WiebENga, Ad;
PENg, Mao;
Battaglia, Evy;
Baker, Scott;
de Vries, Ronald P.

Publication type:

Article

Secretion of small proteins is species-specific within Aspergillus sp.

Published in:

Microbial Biotechnology, 2017, v. 10, n. 2, p. 323, doi. 10.1111/1751-7915.12361

By:

Valette, Nicolas;
Benoit-Gelber, Isabelle;
Falco, Marcos Di;
Wiebenga, Ad;
Vries, Ronald P.;
Gelhaye, Eric;
Morel-Rouhier, Mélanie

Publication type:

Article

Physiological background of the remarkably high Cd<sup>2+</sup> tolerance of the Aspergillus fumigatus Af293 strain.

Published in:

Journal of Basic Microbiology, 2018, v. 58, n. 11, p. 957, doi. 10.1002/jobm.201800200

By:

Kurucz, Vivien;
Kiss, Beáta;
Szigeti, Zsuzsa M.;
Nagy, Gábor;
Orosz, Erzsébet;
Hargitai, Zoltán;
Harangi, Sándor;
Wiebenga, Ad;
de Vries, Ronald P.;
Pócsi, István;
Emri, Tamás

Publication type:

Article

A genomic survey of proteases in Aspergilli.

Published in:

BMC Genomics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2164-15-523

By:

Budak, Sebnem Ozturkoglu;
Miaomiao Zhou;
Brouwer, Carlo;
Ad Wiebenga;
Benoit, Isabelle;
Falco, Marcos Di;
Adrian Tsang;
de Vries, Ronald P.

Publication type:

Article

Carbohydrate utilization and metabolism is highly differentiated in Agaricus bisporus.

Published in:

BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-663

By:

Patyshakuliyeva, Aleksandrina;
Jurak, Edita;
Kohler, Annegret;
Baker, Adam;
Battaglia, Evy;
de Bruijn, Wouter;
Burton, Kerry S.;
Challen, Michael P.;
Coutinho, Pedro M.;
Eastwood, Daniel C.;
Gruben, Birgit S.;
Mäkelä, Miia R.;
Martin, Francis;
Nadal, Marina;
van den Brink, Joost;
Wiebenga, Ad;
Miaomiao Zhou;
Henrissat, Bernard;
Kabel, Mirjam;
Gruppen, Harry

Publication type:

Article

Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 444, doi. 10.1186/1471-2164-13-444

By:

Hitoshi Suzuki;
MacDonald, Jacqueline;
Syed, Khajamohiddin;
Salamov, Asaf;
Chiaki Hori;
Aerts, Andrea;
Henrissat, Bernard;
Wiebenga, Ad;
vanKuyk, Patricia A.;
Barry, Kerrie;
Lindquist, Erika;
LaButti, Kurt;
Lapidus, Alla;
Lucas, Susan;
Coutinho, Pedro;
Yunchen Gong;
Masahiro Samejima;
Radhakrishnan Mahadevan;
Abou-Zaid, Mamdouh;
de Vries, Ronald P.

Publication type:

Article

Enhancing saccharification of wheat straw by mixing enzymes from genetically-modified Trichoderma reesei and Aspergillus niger.

Published in:

Biotechnology Letters, 2016, v. 38, n. 1, p. 65, doi. 10.1007/s10529-015-1951-9

By:

Jiang, Yanping;
Duarte, Alexandra;
Brink, Joost;
Wiebenga, Ad;
Zou, Gen;
Wang, Chengshu;
Vries, Ronald;
Zhou, Zhihua;
Benoit, Isabelle

Publication type:

Article

A comparative genomics study of 23 Aspergillus species from section Flavi.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-019-14051-y

By:

Kjærbølling, Inge;
Vesth, Tammi;
Frisvad, Jens C.;
Nybo, Jane L.;
Theobald, Sebastian;
Kildgaard, Sara;
Petersen, Thomas Isbrandt;
Kuo, Alan;
Sato, Atsushi;
Lyhne, Ellen K.;
Kogle, Martin E.;
Wiebenga, Ad;
Kun, Roland S.;
Lubbers, Ronnie J. M.;
Mäkelä, Miia R.;
Barry, Kerrie;
Chovatia, Mansi;
Clum, Alicia;
Daum, Chris;
Haridas, Sajeet

Publication type:

Article

Genetic Interaction of Aspergillus nidulans galR, xlnR and araR in Regulating D-Galactose and L-Arabinose Release and Catabolism Gene Expression.

Published in:

PLoS ONE, 2015, v. 10, n. 11, p. 1, doi. 10.1371/journal.pone.0143200

By:

Kowalczyk, Joanna E.;
Gruben, Birgit S.;
Battaglia, Evy;
Wiebenga, Ad;
Majoor, Eline;
de Vries, Ronald P.

Publication type:

Article

Macroalgae Derived Fungi Have High Abilities to Degrade Algal Polymers.

Published in:

Microorganisms, 2020, v. 8, n. 1, p. 52, doi. 10.3390/microorganisms8010052

By:

Patyshakuliyeva, Aleksandrina;
Falkoski, Daniel L.;
Wiebenga, Ad;
Timmermans, Klaas;
de Vries, Ronald P.

Publication type:

Article

Carbohydrate-active enzymes from the zygomycete fungus Rhizopus oryzae: a highly specialized approach to carbohydrate degradation depicted at genome level.

Published in:

BMC Genomics, 2011, v. 12, n. 1, p. 1, doi. 10.1186/1471-2164-12-38

By:

Battaglia, Evy;
Benoit, Isabelle;
van den Brink, Joost;
Wiebenga, Ad;
Coutinho, Pedro M.;
Henrissat, Bernard;
de Vries, Ronald P.

Publication type:

Article