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Machine learning identifies signatures of host adaptation in the bacterial pathogen Salmonella enterica.
Published in:
PLoS Genetics, 2018, v. 14, n. 5, p. 1, doi. 10.1371/journal.pgen.1007333
By:
- Wheeler, Nicole E.;
- Gardner, Paul P.;
- Barquist, Lars
Publication type:
Article
Evolution of Salmonella enterica serotype Typhimurium driven by anthropogenic selection and niche adaptation.
Published in:
PLoS Genetics, 2020, v. 16, n. 6, p. 1, doi. 10.1371/journal.pgen.1008850
By:
- Bawn, Matt;
- Alikhan, Nabil-Fareed;
- Thilliez, Gaëtan;
- Kirkwood, Mark;
- Wheeler, Nicole E.;
- Petrovska, Liljana;
- Dallman, Timothy J.;
- Adriaenssens, Evelien M.;
- Hall, Neil;
- Kingsley, Robert A.
Publication type:
Article
Progress and Prospects for a Nucleic Acid Screening Test Set.
Published in:
Applied Biosafety: Journal of the American Biological Safety Association, 2024, v. 29, n. 3, p. 133, doi. 10.1089/apb.2023.0033
By:
- Wheeler, Nicole E.;
- Bartling, Craig;
- Carter, Sarah R.;
- Clore, Adam;
- Diggans, James;
- Flyangolts, Kevin;
- Gemler, Bryan T.;
- Rife Magalis, Brittany;
- Beal, Jacob
Publication type:
Article
Developing a Common Global Baseline for Nucleic Acid Synthesis Screening.
Published in:
Applied Biosafety: Journal of the American Biological Safety Association, 2024, v. 29, n. 2, p. 71, doi. 10.1089/apb.2023.0034
By:
- Wheeler, Nicole E.;
- Carter, Sarah R.;
- Alexanian, Tessa;
- Isaac, Christopher;
- Yassif, Jaime;
- Millet, Piers
Publication type:
Article
An African Salmonella Typhimurium ST313 sublineage with extensive drug-resistance and signatures of host adaptation.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-11844-z
By:
- Van Puyvelde, Sandra;
- Pickard, Derek;
- Vandelannoote, Koen;
- Heinz, Eva;
- Barbé, Barbara;
- de Block, Tessa;
- Clare, Simon;
- Coomber, Eve L.;
- Harcourt, Katherine;
- Sridhar, Sushmita;
- Lees, Emily A.;
- Wheeler, Nicole E.;
- Klemm, Elizabeth J.;
- Kuijpers, Laura;
- Mbuyi Kalonji, Lisette;
- Phoba, Marie-France;
- Falay, Dadi;
- Ngbonda, Dauly;
- Lunguya, Octavie;
- Jacobs, Jan
Publication type:
Article
Joint sequencing of human and pathogen genomes reveals the genetics of pneumococcal meningitis.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-09976-3
By:
- Lees, John A.;
- Ferwerda, Bart;
- Kremer, Philip H. C.;
- Wheeler, Nicole E.;
- Serón, Mercedes Valls;
- Croucher, Nicholas J.;
- Gladstone, Rebecca A.;
- Bootsma, Hester J.;
- Rots, Nynke Y.;
- Wijmega-Monsuur, Alienke J.;
- Sanders, Elisabeth A. M.;
- Trzciński, Krzysztof;
- Wyllie, Anne L.;
- Zwinderman, Aeilko H.;
- van den Berg, Leonard H.;
- van Rheenen, Wouter;
- Veldink, Jan H.;
- Harboe, Zitta B.;
- Lundbo, Lene F.;
- de Groot, Lisette C. P. G. M.
Publication type:
Article
Robust Identification of Noncoding RNA from Transcriptomes Requires Phylogenetically-Informed Sampling.
Published in:
PLoS Computational Biology, 2014, v. 10, n. 10, p. 1, doi. 10.1371/journal.pcbi.1003907
By:
- Lindgreen, Stinus;
- Umu, Sinan Uğur;
- Lai, Alicia Sook-Wei;
- Eldai, Hisham;
- Liu, Wenting;
- McGimpsey, Stephanie;
- Wheeler, Nicole E.;
- Biggs, Patrick J.;
- Thomson, Nick R.;
- Barquist, Lars;
- Poole, Anthony M.;
- Gardner, Paul P.
Publication type:
Article
Rapid Genomic Characterization and Global Surveillance of Klebsiella Using Pathogenwatch.
Published in:
Clinical Infectious Diseases, 2021, v. 73, p. S325, doi. 10.1093/cid/ciab784
By:
- Argimón, Silvia;
- David, Sophia;
- Underwood, Anthony;
- Abrudan, Monica;
- Wheeler, Nicole E;
- Kekre, Mihir;
- Abudahab, Khalil;
- Yeats, Corin A;
- Goater, Richard;
- Taylor, Ben;
- Harste, Harry;
- Muddyman, Dawn;
- Feil, Edward J;
- Brisse, Sylvain;
- Holt, Kathryn;
- Donado-Godoy, Pilar;
- Ravikumar, K L;
- Okeke, Iruka N;
- Carlos, Celia;
- Aanensen, David M
Publication type:
Article
A profile-based method for identifying functional divergence of orthologous genes in bacterial genomes.
Published in:
Bioinformatics, 2016, v. 32, n. 23, p. 3566, doi. 10.1093/bioinformatics/btw518
By:
- Wheeler, Nicole E.;
- Barquist, Lars;
- Kingsley, Robert A.;
- Gardner, Paul P.
Publication type:
Article
Increased power from conditional bacterial genome-wide association identifies macrolide resistance mutations in Neisseria gonorrhoeae.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19250-6
By:
- Ma, Kevin C.;
- Mortimer, Tatum D.;
- Duckett, Marissa A.;
- Hicks, Allison L.;
- Wheeler, Nicole E.;
- Sánchez-Busó, Leonor;
- Grad, Yonatan H.
Publication type:
Article
Adaptation to the cervical environment is associated with increased antibiotic susceptibility in Neisseria gonorrhoeae.
Published in:
Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-17980-1
By:
- Ma, Kevin C.;
- Mortimer, Tatum D.;
- Hicks, Allison L.;
- Wheeler, Nicole E.;
- Sánchez-Busó, Leonor;
- Golparian, Daniel;
- Taiaroa, George;
- Rubin, Daniel H. F.;
- Wang, Yi;
- Williamson, Deborah A.;
- Unemo, Magnus;
- Harris, Simon R.;
- Grad, Yonatan H.
Publication type:
Article

Found: 11