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Improved prediction of protein–protein binding sites using a support vector machines approach.
- Published in:
- Bioinformatics, 2005, v. 21, n. 8, p. 1487
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- Publication type:
- Article
THEORY OF DYNAMIC RESPONSE FUNCTIONS OF PERIODICALLY MODULATED PHYSICAL SYSTEMS.
- Published in:
- International Journal of Modern Physics B: Condensed Matter Physics; Statistical Physics; Applied Physics, 1991, v. 5, n. 9, p. 1313, doi. 10.1142/S0217979291000638
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- Publication type:
- Article
β Edge strands in protein structure prediction and aggregation.
- Published in:
- Protein Science: A Publication of the Protein Society, 2003, v. 12, n. 10, p. 2348, doi. 10.1110/ps.03234503
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- Publication type:
- Article
Asymmetric mutation rates at enzyme-inhibitor interfaces: Implications for the protein-protein docking problem.
- Published in:
- Protein Science: A Publication of the Protein Society, 2003, v. 12, n. 9, p. 2099, doi. 10.1110/ps.0306303
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- Publication type:
- Article
The fibril_one on-line database: Mutations, experimental conditions, and trends associated with amyloid fibril formation.
- Published in:
- Protein Science: A Publication of the Protein Society, 2002, v. 11, n. 7, p. 1862, doi. 10.1110/ps.0204302
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- Publication type:
- Article
Protein structural topology: Automated analysis and diagrammatic representation.
- Published in:
- Protein Science: A Publication of the Protein Society, 1999, v. 8, n. 4, p. 897
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- Publication type:
- Article
Inference in Bayesian networks.
- Published in:
- Nature Biotechnology, 2006, v. 24, n. 1, p. 51, doi. 10.1038/nbt0106-51
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- Publication type:
- Article
A validated microRNA profile with predictive potential in glioblastoma patients treated with bevacizumab.
- Published in:
- Molecular Oncology, 2016, v. 10, n. 8, p. 1296, doi. 10.1016/j.molonc.2016.06.004
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- Publication type:
- Article
Whole genome expression profiling based on paraffin embedded tissue can be used to classify diffuse large B-cell lymphoma and predict clinical outcome.
- Published in:
- British Journal of Haematology, 2012, v. 159, n. 4, p. 441, doi. 10.1111/bjh.12045
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- Publication type:
- Article
TmaDB: a repository for tissue microarray data.
- Published in:
- BMC Bioinformatics, 2005, v. 6, p. 218, doi. 10.1186/1471-2105-6-218
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- Publication type:
- Article
TMB-Hunt: An amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins.
- Published in:
- BMC Bioinformatics, 2005, v. 6, p. 56, doi. 10.1186/1471-2105-6-56
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- Publication type:
- Article
A Primer on Learning in Bayesian Networks for Computational Biology.
- Published in:
- PLoS Computational Biology, 2007, v. 3, n. 8, p. 1409, doi. 10.1371/journal.pcbi.0030129
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- Publication type:
- Article
Simulation of heterogeneous tumour genomes with HeteroGenesis and in silico whole exome sequencing.
- Published in:
- Bioinformatics, 2019, v. 35, n. 16, p. 2850, doi. 10.1093/bioinformatics/bty1063
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- Publication type:
- Article
Parsimonious Gene Correlation Network Analysis (PGCNA): a tool to define modular gene co-expression for refined molecular stratification in cancer.
- Published in:
- NPJ Systems Biology & Applications, 2019, v. 5, n. 1, p. N.PAG, doi. 10.1038/s41540-019-0090-7
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- Publication type:
- Article
A Microarray Platform-Independent Classification Tool for Cell of Origin Class Allows Comparative Analysis of Gene Expression in Diffuse Large B-cell Lymphoma.
- Published in:
- PLoS ONE, 2013, v. 8, n. 2, p. 1, doi. 10.1371/journal.pone.0055895
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- Publication type:
- Article
Heat Stress Enhances the Accumulation of Polyadenylated Mitochondrial Transcripts in Arabidopsis thaliana.
- Published in:
- PLoS ONE, 2008, v. 3, n. 8, p. 1, doi. 10.1371/journal.pone.0002889
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- Publication type:
- Article
Comparative analysis of gene expression platforms for cell‐of‐origin classification of diffuse large B‐cell lymphoma shows high concordance.
- Published in:
- British Journal of Haematology, 2021, v. 192, n. 3, p. 599, doi. 10.1111/bjh.17246
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- Publication type:
- Article
Benchmarking pipelines for subclonal deconvolution of bulk tumour sequencing data.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-26698-7
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- Publication type:
- Article
A consensus algorithm to screen genomes for novel families of transmembrane β barrel proteins.
- Published in:
- Proteins, 2007, v. 69, n. 1, p. 8, doi. 10.1002/prot.21439
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- Publication type:
- Article
Flexible model-based clustering of mixed binary and continuous data: application to genetic regulation and cancer.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. 7, p. 1, doi. 10.1093/nar/gkw1270
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- Publication type:
- Article
SPIB and BATF provide alternate determinants of IRF4 occupancy in diffuse large B-cell lymphoma linked to disease heterogeneity.
- Published in:
- Nucleic Acids Research, 2014, v. 42, n. 12, p. 7591, doi. 10.1093/nar/gku451
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- Publication type:
- Article
An extended set of PRDM1/BLIMP1 target genes links binding motif type to dynamic repression.
- Published in:
- Nucleic Acids Research, 2010, v. 38, n. 16, p. 5336, doi. 10.1093/nar/gkq268
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- Publication type:
- Article
Gene expression meta-analysis reveals immune response convergence on the IFNγ-STAT1-IRF1 axis and adaptive immune resistance mechanisms in lymphoma.
- Published in:
- Genome Medicine, 2015, v. 7, n. 1, p. 1, doi. 10.1186/s13073-015-0218-3
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- Publication type:
- Article
Transferring genomics to the clinic: distinguishing Burkitt and diffuse large B cell lymphomas.
- Published in:
- Genome Medicine, 2015, v. 7, n. 1, p. 1, doi. 10.1186/s13073-015-0187-6
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- Publication type:
- Article
Flexible docking using tabu search and an empirical estimate of binding affinity.
- Published in:
- Proteins, 1998, v. 33, n. 3, p. 367, doi. 10.1002/(SICI)1097-0134(19981115)33:3<367::AID-PROT6>3.0.CO;2-W
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- Publication type:
- Article
Transcellular chaperone signaling is an intercellular stress-response distinct from the HSF-1–mediated heat shock response.
- Published in:
- PLoS Biology, 2023, v. 21, n. 2, p. 1, doi. 10.1371/journal.pbio.3001605
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- Publication type:
- Article
Simple sequence-based kernels do not predict protein–protein interactions.
- Published in:
- Bioinformatics, 2010, v. 26, n. 20, p. 2610, doi. 10.1093/bioinformatics/btq483
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- Publication type:
- Article
Gene function prediction using semantic similarity clustering and enrichment analysis in the malaria parasite Plasmodium falciparum.
- Published in:
- Bioinformatics, 2010, v. 26, n. 19, p. 2431, doi. 10.1093/bioinformatics/btq450
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- Publication type:
- Article
MetNetMaker: a free and open-source tool for the creation of novel metabolic networks in SBML format.
- Published in:
- Bioinformatics, 2010, v. 26, n. 18, p. 2352, doi. 10.1093/bioinformatics/btq425
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- Publication type:
- Article
Deleterious SNP prediction: be mindful of your training data!
- Published in:
- Bioinformatics, 2007, v. 23, n. 6, p. 664, doi. 10.1093/bioinformatics/btl649
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- Publication type:
- Article
Ibrutinib induces chromatin reorganisation of chronic lymphocytic leukaemia cells.
- Published in:
- Oncogenesis, 2019, v. 8, n. 5, p. N.PAG, doi. 10.1038/s41389-019-0142-2
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- Publication type:
- Article
metaTIGER: a metabolic evolution resource.
- Published in:
- Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D531, doi. 10.1093/nar/gkn826
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- Publication type:
- Article
Identification of the REST regulon reveals extensive transposable element-mediated binding site duplication.
- Published in:
- Nucleic Acids Research, 2006, v. 34, n. 14, p. 3862, doi. 10.1093/nar/gkl525
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- Publication type:
- Article
Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
- Published in:
- Nucleic Acids Research, 2006, v. 34, n. 11, p. w504, doi. 10.1093/nar/gkl204
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- Publication type:
- Article
metaSHARK: a WWW platform for interactive exploration of metabolic networks.
- Published in:
- Nucleic Acids Research, 2006, v. 34, n. 11, p. w725, doi. 10.1093/nar/gkl196
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- Publication type:
- Article
TMB-Hunt: a web server to screen sequence sets for transmembrane β-barrel proteins.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. suppl 2, p. w188, doi. 10.1093/nar/gki384
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- Publication type:
- Article
metaSHARK: software for automated metabolic network prediction from DNA sequence and its application to the genomes of Plasmodium falciparum and Eimeria tenella.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. 4, p. 1399, doi. 10.1093/nar/gki285
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- Publication type:
- Article
TOPS: an enhanced database of protein structural topology.
- Published in:
- Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d251
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- Publication type:
- Article
Identification of gene specific cis-regulatory elements during differentiation of mouse embryonic stem cells: An integrative approach using high-throughput datasets.
- Published in:
- PLoS Computational Biology, 2019, v. 15, n. 11, p. 1, doi. 10.1371/journal.pcbi.1007337
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- Publication type:
- Article
KvDB; mining and mapping sequence variants in voltage-gated potassium channels.
- Published in:
- 2010
- By:
- Publication type:
- Other
GO- At : in silico prediction of gene function in Arabidopsis thaliana by combining heterogeneous data.
- Published in:
- Plant Journal, 2010, v. 61, n. 4, p. 713, doi. 10.1111/j.1365-313X.2009.04097.x
- By:
- Publication type:
- Article
The Arabidopsis co-expression tool (ACT): a WWW-based tool and database for microarray-based gene expression analysis.
- Published in:
- Plant Journal, 2006, v. 46, n. 2, p. 336, doi. 10.1111/j.1365-313X.2006.02681.x
- By:
- Publication type:
- Article
Using common variants to indicate cancer genes.
- Published in:
- International Journal of Cancer, 2015, v. 136, n. 1, p. 241, doi. 10.1002/ijc.28951
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- Publication type:
- Article
Integrated analyses of chromatin accessibility and gene expression data for elucidating the transcriptional regulatory mechanisms during early hematopoietic development in mouse.
- Published in:
- 2013
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- Publication type:
- Conference Paper
The hematopoietic master regulator RUNX1 reshapes the epigenetic landscape at the onset of hematopoiesis.
- Published in:
- Epigenetics & Chromatin, 2013, v. 6, n. S1, p. 1, doi. 10.1186/1756-8935-6-S1-O18
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- Publication type:
- Article
RUNX1 reshapes the epigenetic landscape at the onset of haematopoiesis.
- Published in:
- EMBO Journal, 2012, v. 31, n. 22, p. 4318, doi. 10.1038/emboj.2012.275
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- Publication type:
- Article
Cancer somatic mutations cluster in a subset of regulatory sites predicted from the ENCODE data.
- Published in:
- Molecular Cancer, 2016, v. 15, p. 1, doi. 10.1186/s12943-016-0560-0
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- Publication type:
- Article