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How informative is your kinetic model?: using resampling methods for model invalidation.
Published in:
BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/1752-0509-8-61
By:
- Hasdemir, Dicle;
- Hoefsloot, Huub C. J.;
- Westerhuis, Johan A.;
- Smilde, Age K.
Publication type:
Article
Use of prior knowledge for the analysis of high-throughput transcriptomics and metabolomics data.
Published in:
BMC Systems Biology, 2014, v. 8, n. Suppl 2, p. 1, doi. 10.1186/1752-0509-8-S2-S2
By:
- Reshetova, Polina;
- Smilde, Age K.;
- van Kampen, Antoine H. C.;
- Westerhuis, Johan A.
Publication type:
Article
Metabolomics variable selection and classification in the presence of observations below the detection limit using an extension of ERp.
Published in:
BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1480-8
By:
- van Reenen, Mari;
- Westerhuis, Johan A.;
- Reinecke, Carolus J.;
- Venter, J. Hendrik
Publication type:
Article
Separating common from distinctive variation.
Published in:
BMC Bioinformatics, 2016, v. 17, p. 271, doi. 10.1186/s12859-016-1037-2
By:
- van der Kloet, Frans M.;
- Sebastián-León, Patricia;
- Conesa, Ana;
- Smilde, Age K.;
- Westerhuis, Johan A.
Publication type:
Article
Variable selection for binary classification using error rate p-values applied to metabolomics data.
Published in:
BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-015-0867-7
By:
- van Reenen, Mari;
- Reinecke, Carolus J.;
- Westerhuis, Johan A.;
- Venter, J. Hendrik
Publication type:
Article
Flavor Profiling Using Comprehensive Mass Spectrometry Analysis of Metabolites in Tomato Soups.
Published in:
Metabolites (2218-1989), 2022, v. 12, n. 12, p. 1194, doi. 10.3390/metabo12121194
By:
- Leygeber, Simon;
- Grossmann, Justus L.;
- Diez-Simon, Carmen;
- Karu, Naama;
- Dubbelman, Anne-Charlotte;
- Harms, Amy C.;
- Westerhuis, Johan A.;
- Jacobs, Doris M.;
- Lindenburg, Peter W.;
- Hendriks, Margriet M. W. B.;
- Ammerlaan, Brenda C. H.;
- van den Berg, Marco A.;
- van Doorn, Rudi;
- Mumm, Roland;
- Hall, Robert D.;
- Smilde, Age K.;
- Hankemeier, Thomas
Publication type:
Article
Monitoring of batch processes using spectroscopy.
Published in:
AIChE Journal, 2002, v. 48, n. 10, p. 2283, doi. 10.1002/aic.690481018
By:
- Gurden, Stephen P.;
- Westerhuis, Johan A.;
- Smilde, Age K.
Publication type:
Article
Performance assessment and improvement of control charts for statistical batch process monitoring.
Published in:
Statistica Neerlandica, 2006, v. 60, n. 3, p. 339, doi. 10.1111/j.1467-9574.2006.00337.x
By:
- Ramaker, Henk-Jan;
- van Sprang, Eric N. M.;
- Westerhuis, Johan A.;
- Gurden, Stephen P.;
- Smilde, Age K.;
- van der Meulen, Frank H.
Publication type:
Article
Network Identification of Hormonal Regulation.
Published in:
PLoS ONE, 2014, v. 9, n. 5, p. 1, doi. 10.1371/journal.pone.0096284
By:
- Vis, Daniel J.;
- Westerhuis, Johan A.;
- Hoefsloot, Huub C. J.;
- Roelfsema, Ferdinand;
- van der Greef, Jan;
- Hendriks, Margriet M. W. B.;
- Smilde, Age K.
Publication type:
Article
Topology of Transcriptional Regulatory Networks: Testing and Improving.
Published in:
PLoS ONE, 2012, v. 7, n. 7, p. 1, doi. 10.1371/journal.pone.0040082
By:
- Hasdemir, Dicle;
- Smits, Gertien J.;
- Westerhuis, Johan A.;
- Smilde, Age K.
Publication type:
Article
Detecting Regulatory Mechanisms in Endocrine Time Series Measurements.
Published in:
PLoS ONE, 2012, v. 7, n. 3, p. 1, doi. 10.1371/journal.pone.0032985
By:
- Vis, Daniel J.;
- Westerhuis, Johan A.;
- Hoefsloot, Huub C. J.;
- Roelfsema, Ferdinand;
- Hendriks, Margriet M. W. B.;
- Smilde, Age K.
Publication type:
Article
Simplivariate Models: Uncovering the Underlying Biology in Functional Genomics Data.
Published in:
PLoS ONE, 2011, v. 6, n. 6, p. 1, doi. 10.1371/journal.pone.0020747
By:
- Saccenti, Edoardo;
- Westerhuis, Johan A.;
- Smilde, Age K.;
- van der Werf, Mariët J.;
- Hageman, Jos A.;
- Hendriks, Margriet M. W. B.
Publication type:
Article
Simplivariate Models: Ideas and First Examples.
Published in:
PLoS ONE, 2008, v. 3, n. 9, p. 1, doi. 10.1371/journal.pone.0003259
By:
- Hageman, Jos A.;
- Hendriks, Margriet M. W. B.;
- Westerhuis, Johan A.;
- van der Werf, Mariët J.;
- Berger, Ruud;
- Smilde, Age K.
Publication type:
Article
A strategy for differential abundance analysis of sparse microbiome data with group-wise structured zeros.
Published in:
Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-62437-w
By:
- Abegaz, Fentaw;
- Abedini, Davar;
- White, Fred;
- Guerrieri, Alessandra;
- Zancarini, Anouk;
- Dong, Lemeng;
- Westerhuis, Johan A.;
- van Eeuwijk, Fred;
- Bouwmeester, Harro;
- Smilde, Age K.
Publication type:
Article
Systematic selection of competing metabolomics methods in a metabolite-sensory relationship study.
Published in:
Metabolomics, 2021, v. 17, n. 9, p. 1, doi. 10.1007/s11306-021-01821-3
By:
- Davarzani, Naser;
- Diez-Simon, Carmen;
- Großmann, Justus L.;
- Jacobs, Doris M.;
- van Doorn, Rudi;
- van den Berg, Marco A.;
- Smilde, Age K.;
- Mumm, Roland;
- Hall, Robert D.;
- Westerhuis, Johan A.
Publication type:
Article
Common and distinct variation in data fusion of designed experimental data.
Published in:
Metabolomics, 2020, v. 16, n. 1, p. 1, doi. 10.1007/s11306-019-1622-2
By:
- Alinaghi, Masoumeh;
- Bertram, Hanne Christine;
- Brunse, Anders;
- Smilde, Age K.;
- Westerhuis, Johan A.
Publication type:
Article
Analyzing metabolomics-based challenge tests.
Published in:
Metabolomics, 2015, v. 11, n. 1, p. 50, doi. 10.1007/s11306-014-0673-7
By:
- Vis, Daniel;
- Westerhuis, Johan;
- Jacobs, Doris;
- Duynhoven, John;
- Wopereis, Suzan;
- Ommen, Ben;
- Hendriks, Margriet;
- Smilde, Age
Publication type:
Article
Population-based nutrikinetic modeling of polyphenol exposure.
Published in:
Metabolomics, 2014, v. 10, n. 6, p. 1059, doi. 10.1007/s11306-014-0645-y
By:
- Velzen, Ewoud;
- Westerhuis, Johan;
- Grün, Christian;
- Jacobs, Doris;
- Eilers, Paul;
- Mulder, Theo;
- Foltz, Martin;
- Garczarek, Ursula;
- Kemperman, Rober;
- Vaughan, Elaine;
- Duynhoven, John;
- Smilde, Age
Publication type:
Article
Reflections on univariate and multivariate analysis of metabolomics data.
Published in:
Metabolomics, 2014, v. 10, n. 3, p. 361, doi. 10.1007/s11306-013-0598-6
By:
- Saccenti, Edoardo;
- Hoefsloot, Huub;
- Smilde, Age;
- Westerhuis, Johan;
- Hendriks, Margriet
Publication type:
Article
Editorial-data analysis in metabolomics.
Published in:
2012
By:
- Jansen, Jeroen;
- Westerhuis, Johan
Publication type:
Editorial
Double-check: validation of diagnostic statistics for PLS-DA models in metabolomics studies.
Published in:
Metabolomics, 2012, v. 8, p. 3, doi. 10.1007/s11306-011-0330-3
By:
- Szymańska, Ewa;
- Saccenti, Edoardo;
- Smilde, Age;
- Westerhuis, Johan
Publication type:
Article
Multivariate paired data analysis: multilevel PLSDA versus OPLSDA.
Published in:
Metabolomics, 2010, v. 6, n. 1, p. 119, doi. 10.1007/s11306-009-0185-z
By:
- Westerhuis, Johan A.;
- van Velzen, Ewoud J. J.;
- Hoefsloot, Huub C. J.;
- Smilde, Age K.
Publication type:
Article
Statistical validation of megavariate effects in ASCA.
Published in:
BMC Bioinformatics, 2007, v. 8, p. 322, doi. 10.1186/1471-2105-8-322
By:
- Vis, Daniel J.;
- Westerhuis, Johan A.;
- Smilde, Age K;
- van der Greef, Jan
Publication type:
Article
Repeated measures ASCA+ for analysis of longitudinal intervention studies with multivariate outcome data.
Published in:
PLoS Computational Biology, 2021, v. 17, n. 11, p. 1, doi. 10.1371/journal.pcbi.1009585
By:
- Madssen, Torfinn S.;
- Giskeødegård, Guro F.;
- Smilde, Age K.;
- Westerhuis, Johan A.
Publication type:
Article
Elevation of fatty acid desaturase 2 in esophageal adenocarcinoma increases polyunsaturated lipids and may exacerbate bile acid‐induced DNA damage.
Published in:
Clinical & Translational Medicine, 2022, v. 12, n. 5, p. 1, doi. 10.1002/ctm2.810
By:
- Molendijk, Jeffrey;
- Kolka, Cathryn M.;
- Cairns, Henry;
- Brosda, Sandra;
- Mohamed, Ahmed;
- Shah, Alok K.;
- Brown, Ian;
- Hodson, Mark P.;
- Hennessy, Thomas;
- Liu, Guanghao;
- Stoll, Thomas;
- Richards, Renee S.;
- Gartside, Michael;
- Patel, Kalpana;
- Clemons, Nicholas J.;
- Phillips, Wayne A.;
- Barbour, Andrew;
- Westerhuis, Johan A.;
- Hill, Michelle M.
Publication type:
Article
Fourier-Transform Raman Spectroscopic On-Line Monitoring of the Anionic Dispersion Block Copolymerization of Styrene and 1,3-Butadiene.
Published in:
Macromolecular Rapid Communications, 2001, v. 22, n. 9, p. 690, doi. 10.1002/1521-3927(20010601)22:9<690::AID-MARC690>3.0.CO;2-O
By:
- Bandermann, Friedhelm;
- Tausendfreund, Ingo;
- Sasic, Slobodan;
- Ozaki, Yukihiro;
- Kleimann, Michael;
- Westerhuis, Johan A.;
- Siesler, Heinz W.
Publication type:
Article
Principal component analysis of binary genomics data.
Published in:
Briefings in Bioinformatics, 2019, v. 20, n. 1, p. 317, doi. 10.1093/bib/bbx119
By:
- Song, Yipeng;
- Westerhuis, Johan A;
- Aben, Nanne;
- Michaut, Magali;
- Wessels, Lodewyk F A;
- Smilde, Age K
Publication type:
Article
Variable importance in latent variable regression models.
Published in:
Journal of Chemometrics, 2014, v. 28, n. 8, p. 615, doi. 10.1002/cem.2626
By:
- Kvalheim, Olav M.;
- Arneberg, Reidar;
- Bleie, Olav;
- Rajalahti, Tarja;
- Smilde, Age K.;
- Westerhuis, Johan A.
Publication type:
Article
Tracy-Widom statistic for the largest eigenvalue of autoscaled real matrices.
Published in:
Journal of Chemometrics, 2011, v. 25, n. 12, p. 644, doi. 10.1002/cem.1411
By:
- Saccenti, Edoardo;
- Smilde, Age K.;
- Westerhuis, Johan A.;
- Hendriks, Margriet M. W. B.
Publication type:
Article
Multi-way analysis of flux distributions across multiple conditions.
Published in:
Journal of Chemometrics, 2009, v. 23, n. 7/8, p. 406, doi. 10.1002/cem.1238
By:
- Verouden, Maikel P. H.;
- Notebaart, Richard A.;
- Westerhuis, Johan A.;
- van der Werf, Mariët J.;
- Teusink, Bas;
- Smilde, Age K.
Publication type:
Article
The geometry of ASCA.
Published in:
Journal of Chemometrics, 2008, v. 22, n. 8, p. 464, doi. 10.1002/cem.1175
By:
- Smilde, Age K.;
- Hoefsloot, Huub. C.J.;
- Westerhuis, Johan. A.
Publication type:
Article
PARAFASCA: ASCA combined with PARAFAC for the analysis of metabolic fingerprinting data.
Published in:
Journal of Chemometrics, 2008, v. 22, n. 2, p. 114, doi. 10.1002/cem.1105
By:
- Jansen, Jeroen J.;
- Bro, Rasmus;
- Hoefsloot, Huub C. J.;
- van den Berg, Frans W. J.;
- Westerhuis, Johan A.;
- Smilde, Age K.
Publication type:
Article
Grey component analysis.
Published in:
Journal of Chemometrics, 2007, v. 21, n. 10/11, p. 474, doi. 10.1002/cem.1072
By:
- Westerhuis, Johan A.;
- Derks, Eduard P. P. A.;
- Hoefsloot, Huub C. J.;
- Smilde, Age K.
Publication type:
Article
Maximum likelihood scaling (MALS).
Published in:
Journal of Chemometrics, 2006, v. 20, n. 3/4, p. 120, doi. 10.1002/cem.996
By:
- Hoefsloot, Huub C. J.;
- Verouden, Maikel P. H.;
- Westerhuis, Johan A.;
- Smilde, Age K.
Publication type:
Article
ASCA: analysis of multivariate data obtained from an experimental design.
Published in:
Journal of Chemometrics, 2005, v. 19, n. 9, p. 469, doi. 10.1002/cem.952
By:
- Jansen, Jeroen J.;
- Hoefsloot, Huub C. J.;
- van der Greef, Jan;
- Timmerman, Marieke E.;
- Westerhuis, Johan A.;
- Smilde, Age K.
Publication type:
Article
Preface to ICRM2002 proceedings.
Published in:
Journal of Chemometrics, 2003, v. 17, n. 8/9, p. 425, doi. 10.1002/cem.821
By:
- Johan Westerhuis
Publication type:
Article
A framework for sequential multiblock component methods.
Published in:
Journal of Chemometrics, 2003, v. 17, n. 6, p. 323, doi. 10.1002/cem.811
By:
- Smilde, Age K.;
- Westerhuis, Johan A.;
- de Jong, Sijmen
Publication type:
Article
Deflation in multiblock PLS.
Published in:
Journal of Chemometrics, 2001, v. 15, n. 5, p. 485, doi. 10.1002/cem.652
By:
- Westerhuis, Johan A.;
- Smilde, Age K.
Publication type:
Article
TRICAP 2000: Three-way Methods in Chemistry and Psychology, Hvedholm Castle, Faaborg, Denmark, 16-21 July 2000.
Published in:
Journal of Chemometrics, 2001, v. 15, n. 3, p. 193, doi. 10.1002/cem.648
By:
- Westerhuis, Johan A.;
- Timmerman, Marieke E.
Publication type:
Article
Modelling of spectroscopic batch process data using grey models to incorporate external information.
Published in:
Journal of Chemometrics, 2001, v. 15, n. 2, p. 101, doi. 10.1002/1099-128X(200102)15:2<101::AID-CEM602>3.0.CO;2-V
By:
- Gurden, Stephen P.;
- Westerhuis, Johan A.;
- Bijlsma, Sabina;
- Smilde, Age K.
Publication type:
Article
Standardized Q-statistic for improved sensitivity in the monitoring of residuals in MSPC.
Published in:
Journal of Chemometrics, 2000, v. 14, n. 4, p. 335, doi. 10.1002/1099-128X(200007/08)14:4<335::AID-CEM579>3.0.CO;2-F
By:
- Westerhuis, Johan A.;
- Gurden, Stephen P.;
- Smilde, Age K.
Publication type:
Article
Multiway multiblock component and covariates regression models.
Published in:
Journal of Chemometrics, 2000, v. 14, n. 3, p. 301, doi. 10.1002/1099-128X(200005/06)14:3<301::AID-CEM594>3.0.CO;2-H
By:
- Smilde, Age K.;
- Westerhuis, Johan A.;
- Boqué, Ricard
Publication type:
Article
Comparing alternative approaches for multivariate statistical analysis of batch process data.
Published in:
Journal of Chemometrics, 1999, v. 13, n. 3/4, p. 397, doi. 10.1002/(SICI)1099-128X(199905/08)13:3/4<397::AID-CEM559>3.0.CO;2-I
By:
- Westerhuis, Johan A.;
- Kourti, Theodora;
- MacGregor, John F.
Publication type:
Article
Analysis of multiblock and hierarchical PCA and PLS models.
Published in:
Journal of Chemometrics, 1998, v. 12, n. 5, p. 301, doi. 10.1002/(SICI)1099-128X(199809/10)12:5<301::AID-CEM515>3.0.CO;2-S
By:
- Westerhuis, Johan A.;
- Kourti, Theodora;
- MacGregor, John F.
Publication type:
Article
Multivariate modelling of the pharmaceutical two-step process of wet granulation and tableting with multiblock partial least squares.
Published in:
Journal of Chemometrics, 1997, v. 11, n. 5, p. 379, doi. 10.1002/(SICI)1099-128X(199709/10)11:5<379::AID-CEM482>3.0.CO;2-8
By:
- Westerhuis, Johan A.;
- Coenegracht, Pierre M. J.
Publication type:
Article
Increased comparability between RNA-Seq and microarray data by utilization of gene sets.
Published in:
PLoS Computational Biology, 2020, v. 16, n. 9, p. 1, doi. 10.1371/journal.pcbi.1008295
By:
- van der Kloet, Frans M.;
- Buurmans, Jeroen;
- Jonker, Martijs J.;
- Smilde, Age K.;
- Westerhuis, Johan A.
Publication type:
Article
Tracking Chemical Kinetics in High-Throughput Systems.
Published in:
Chemistry - A European Journal, 2003, v. 9, n. 16, p. 3876, doi. 10.1002/chem.200304745
By:
- Hans F. M. Boelens;
- David Iron;
- Johan A. Westerhuis;
- Gadi Rothenberg
Publication type:
Article
Targeted proteomic response to coffee consumption.
Published in:
European Journal of Nutrition, 2020, v. 59, n. 4, p. 1529, doi. 10.1007/s00394-019-02009-1
By:
- Kuang, Alan;
- Erlund, Iris;
- Herder, Christian;
- Westerhuis, Johan A.;
- Tuomilehto, Jaakko;
- Cornelis, Marilyn C.
Publication type:
Article
Contribution towards a Metabolite Profile of the Detoxification of Benzoic Acid through Glycine Conjugation: An Intervention Study.
Published in:
PLoS ONE, 2016, v. 11, n. 12, p. 1, doi. 10.1371/journal.pone.0167309
By:
- Irwin, Cindy;
- van Reenen, Mari;
- Mason, Shayne;
- Mienie, Lodewyk J.;
- Westerhuis, Johan A.;
- Reinecke, Carolus J.
Publication type:
Article
Generalized simultaneous component analysis of binary and quantitative data.
Published in:
Journal of Chemometrics, 2021, v. 35, n. 3, p. 1, doi. 10.1002/cem.3312
By:
- Song, Yipeng;
- Westerhuis, Johan A.;
- Aben, Nanne;
- Wessels, Lodewyk F. A.;
- Groenen, Patrick J. F.;
- Smilde, Age K.
Publication type:
Article

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