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Fusion–fission–mitophagy cycling and metabolic reprogramming coordinate nerve growth factor (NGF)‐dependent neuronal differentiation.
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- FEBS Journal, 2024, v. 291, n. 13, p. 2811, doi. 10.1111/febs.17083
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- Article
Arsenic Contamination of Groundwater Is Determined by Complex Interactions between Various Chemical and Biological Processes.
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- Toxics, 2024, v. 12, n. 1, p. 89, doi. 10.3390/toxics12010089
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- Article
Microbial Ecosystems in Movile Cave: An Environment of Extreme Life.
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- Life (2075-1729), 2023, v. 13, n. 11, p. 2120, doi. 10.3390/life13112120
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- Article
'Social' versus 'asocial' cells—dynamic competition flux balance analysis.
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- NPJ Systems Biology & Applications, 2023, v. 9, n. 1, p. 1, doi. 10.1038/s41540-023-00313-5
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- Publication type:
- Article
Gear Shifting in Biological Energy Transduction.
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- Entropy, 2023, v. 25, n. 7, p. 993, doi. 10.3390/e25070993
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- Publication type:
- Article
Competitive, multi‐objective, and compartmented Flux Balance Analysis for addressing tissue‐specific inborn errors of metabolism.
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- Journal of Inherited Metabolic Disease, 2023, v. 46, n. 4, p. 573, doi. 10.1002/jimd.12603
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- Article
Summation Laws in Control of Biochemical Systems.
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- Mathematics (2227-7390), 2023, v. 11, n. 11, p. 2473, doi. 10.3390/math11112473
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- Article
System-Level Scenarios for the Elucidation of T Cell-Mediated Germinal Center B Cell Differentiation.
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- Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.734282
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- Article
Simultaneous Integration of Gene Expression and Nutrient Availability for Studying the Metabolism of Hepatocellular Carcinoma Cell Lines.
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- Biomolecules (2218-273X), 2021, v. 11, n. 4, p. 490, doi. 10.3390/biom11040490
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- Publication type:
- Article
ROS networks: designs, aging, Parkinson's disease and precision therapies.
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- NPJ Systems Biology & Applications, 2020, v. 6, n. 1, p. N.PAG, doi. 10.1038/s41540-020-00150-w
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- Publication type:
- Article
Advice from a systems-biology model of the corona epidemics.
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- NPJ Systems Biology & Applications, 2020, v. 6, n. 1, p. 1, doi. 10.1038/s41540-020-0138-8
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- Publication type:
- Article
Clb3-centered regulations are recurrent across distinct parameter regions in minimal autonomous cell cycle oscillator designs.
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- NPJ Systems Biology & Applications, 2020, v. 6, n. 1, p. 1, doi. 10.1038/s41540-020-0125-0
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- Article
Ample Arsenite Bio-Oxidation Activity in Bangladesh Drinking Water Wells: A Bonanza for Bioremediation?
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- Microorganisms, 2019, v. 7, n. 8, p. 246, doi. 10.3390/microorganisms7080246
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- Publication type:
- Article
Ranking network mechanisms by how they fit diverse experiments and deciding on E. coli's ammonium transport and assimilation network.
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- NPJ Systems Biology & Applications, 2019, v. 5, n. 1, p. N.PAG, doi. 10.1038/s41540-019-0091-6
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- Publication type:
- Article
Predictable Irreversible Switching Between Acute and Chronic Inflammation.
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- Frontiers in Immunology, 2018, p. N.PAG, doi. 10.3389/fimmu.2018.01596
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- Publication type:
- Article
Metabolic flexibility of a prospective bioremediator: Desulfitobacterium hafniense Y51 challenged in chemostats.
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- Environmental Microbiology, 2018, v. 20, n. 7, p. 2652, doi. 10.1111/1462-2920.14295
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- Publication type:
- Article
STRENDA DB: enabling the validation and sharing of enzyme kinetics data.
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- FEBS Journal, 2018, v. 285, n. 12, p. 2193, doi. 10.1111/febs.14427
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- Publication type:
- Article
Learning to read and write in evolution: from static pseudoenzymes and pseudosignalers to dynamic gear shifters.
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- Biochemical Society Transactions, 2017, v. 45, n. 3, p. 635, doi. 10.1042/BST20160281
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- Article
The Peculiar Glycolytic Pathway in Hyperthermophylic Archaea: Understanding Its Whims by Experimentation In Silico.
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- International Journal of Molecular Sciences, 2017, v. 18, n. 4, p. 876, doi. 10.3390/ijms18040876
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- Article
Targeting pathogen metabolism without collateral damage to the host.
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- Scientific Reports, 2017, p. 40406, doi. 10.1038/srep40406
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- Publication type:
- Article
Molecular assessment of bacterial vaginosis by Lactobacillus abundance and species diversity.
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- 2016
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- Publication type:
- journal article
Quantitative analysis of drug effects at the whole-body level: a case study for glucose metabolism in malaria patients.
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- 2015
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- Publication type:
- Case Study
Metabolite profiling of CHO cells: Molecular reflections of bioprocessing effectiveness.
- Published in:
- Biotechnology Journal, 2015, v. 10, n. 9, p. 1434, doi. 10.1002/biot.201400664
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- Publication type:
- Article
Silence on the relevant literature and errors in implementation.
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- Nature Biotechnology, 2015, v. 33, n. 4, p. 336, doi. 10.1038/nbt.3185
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- Publication type:
- Article
Multiplex Eukaryotic Transcription (In)activation: Timing, Bursting and Cycling of a Ratchet Clock Mechanism.
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- PLoS Computational Biology, 2015, v. 11, n. 4, p. 1, doi. 10.1371/journal.pcbi.1004236
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- Publication type:
- Article
Tracing the molecular basis of transcriptional dynamics in noisy data by using an experiment-based mathematical model.
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- Nucleic Acids Research, 2015, v. 43, n. 1, p. 153, doi. 10.1093/nar/gku1272
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- Publication type:
- Article
Monte-Carlo Modeling of the Central Carbon Metabolism of Lactococcus lactis: Insights into Metabolic Regulation.
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- PLoS ONE, 2014, v. 9, n. 9, p. 1, doi. 10.1371/journal.pone.0106453
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- Publication type:
- Article
Macromolecular networks and intelligence in microorganisms.
- Published in:
- Frontiers in Microbiology, 2014, v. 5, p. 1, doi. 10.3389/fmicb.2014.00379
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- Publication type:
- Article
Clusters of reaction rates and concentrations in protein networks such as the phosphotransferase system.
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- FEBS Journal, 2014, v. 281, n. 2, p. 531, doi. 10.1111/febs.12664
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- Publication type:
- Article
Effects of Cadmium and Mercury on the Upper Part of Skeletal Muscle Glycolysis in Mice.
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- PLoS ONE, 2014, v. 9, n. 1, p. 1, doi. 10.1371/journal.pone.0080018
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- Publication type:
- Article
(Im)Perfect robustness and adaptation of metabolic networks subject to metabolic and gene-expression regulation: marrying control engineering with metabolic control analysis.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-131
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- Publication type:
- Article
Intermediate instability at high temperature leads to low pathway efficiency for an in vitro reconstituted system of gluconeogenesis in Sulfolobus solfataricus.
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- FEBS Journal, 2013, v. 280, n. 18, p. 4666, doi. 10.1111/febs.12438
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- Publication type:
- Article
A new regulatory principle for in vivo biochemistry: Pleiotropic low affinity regulation by the adenine nucleotides – Illustrated for the glycolytic enzymes of Saccharomyces cerevisiae.
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- FEBS Letters, 2013, v. 587, n. 17, p. 2860, doi. 10.1016/j.febslet.2013.07.013
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- Publication type:
- Article
Multiscale modelling approach combining a kinetic model of glutathione metabolism with PBPK models of paracetamol and the potential glutathionedepletion biomarkers ophthalmic acid and 5-oxoproline in humans and rats.
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- Integrative Biology, 2013, v. 5, n. 6, p. 877, doi. 10.1039/c3ib20245c
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- Publication type:
- Article
Optimization of stress response through the nuclear receptor-mediated cortisol signalling network.
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- Nature Communications, 2013, v. 4, n. 4, p. 1792, doi. 10.1038/ncomms2799
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- Publication type:
- Article
Mathematical modelling of miRNA mediated BCR.ABL protein regulation in chronic myeloid leukaemia vis-a-vis therapeutic strategies.
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- Integrative Biology, 2013, v. 5, n. 3, p. 543, doi. 10.1039/c3ib20230e
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- Publication type:
- Article
Trade-off of dynamic fragility but not of robustness in metabolic pathways in silico.
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- FEBS Journal, 2013, v. 280, n. 1, p. 160, doi. 10.1111/febs.12057
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- Publication type:
- Article
Why in vivo may not equal in vitro - new effectors revealed by measurement of enzymatic activities under the same in vivo-like assay conditions.
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- FEBS Journal, 2012, v. 279, n. 22, p. 4145, doi. 10.1111/febs.12007
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- Publication type:
- Article
A systems biology approach to deciphering the etiology of steatosis employing patient-derived dermal fibroblasts and iPS cells.
- Published in:
- Frontiers in Physiology, 2012, v. 3, p. 1, doi. 10.3389/fphys.2012.00339
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- Publication type:
- Article
Understanding Dupuytren's disease using systems biology: a move away from reductionism.
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- Frontiers in Physiology, 2012, v. 3, p. 1, doi. 10.3389/fphys.2012.00316
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- Publication type:
- Article
Engineering of self-sustaining systems: Substituting the yeast glucose transporter plus hexokinase for the Lactococcus lactis phosphotransferase system in a Lactococcus lactis network in silico.
- Published in:
- Biotechnology Journal, 2012, v. 7, n. 7, p. 877, doi. 10.1002/biot.201100314
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- Publication type:
- Article
Understanding complexity in neurodegenerative diseases: in silico reconstruction of emergence.
- Published in:
- Frontiers in Physiology, 2012, v. 3, p. 1, doi. 10.3389/fphys.2012.00291
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- Publication type:
- Article
Understanding Dupuytren's disease using systems biology: a move away from reductionism.
- Published in:
- 2012
- By:
- Publication type:
- Opinion
Testing Biochemistry Revisited: How In Vivo Metabolism Can Be Understood from In Vitro Enzyme Kinetics.
- Published in:
- PLoS Computational Biology, 2012, v. 8, n. 4, p. 1, doi. 10.1371/journal.pcbi.1002483
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- Publication type:
- Article
Metabolite profiling of recombinant CHO cells: Designing tailored feeding regimes that enhance recombinant antibody production.
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- Biotechnology & Bioengineering, 2011, v. 108, n. 12, p. 3025, doi. 10.1002/bit.23269
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- Publication type:
- Article
How Molecular Competition Influences Fluxes in Gene Expression Networks.
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- PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0028494
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- Publication type:
- Article
Dupuytren's: a systems biology disease.
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- Arthritis Research & Therapy, 2011, v. 13, n. 5, p. 1, doi. 10.1186/ar3438
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- Publication type:
- Article
Health technology assessment in the era of personalized health care.
- Published in:
- International Journal of Technology Assessment in Health Care, 2011, v. 27, n. 2, p. 118, doi. 10.1017/S026646231100002X
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- Publication type:
- Article
AmtB-mediated NH<sub>3</sub> transport in prokaryotes must be active and as a consequence regulation of transport by GlnK is mandatory to limit futile cycling of
- Published in:
- FEBS Letters, 2011, v. 585, n. 1, p. 23, doi. 10.1016/j.febslet.2010.11.055
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- Publication type:
- Article
A domino effect in drug action: from metabolic assault towards parasite differentiation.
- Published in:
- Molecular Microbiology, 2011, v. 79, n. 1, p. 94, doi. 10.1111/j.1365-2958.2010.07435.x
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- Publication type:
- Article