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Using neural biomarkers to personalize dosing of vagus nerve stimulation.
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- Bioelectronic Medicine, 2024, v. 10, n. 1, p. 1, doi. 10.1186/s42234-024-00147-4
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GPseudoClust: deconvolution of shared pseudo-profiles at single-cell resolution.
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- Bioinformatics, 2020, v. 36, n. 5, p. 1484, doi. 10.1093/bioinformatics/btz778
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- Article
Transcriptomic profiling reveals three molecular phenotypes of adenocarcinoma at the gastroesophageal junction.
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- International Journal of Cancer, 2019, v. 145, n. 12, p. 3389, doi. 10.1002/ijc.32384
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- Article
A meta-analysis of multiple matched aCGH/expression cancer datasets reveals regulatory relationships and pathway enrichment of potential oncogenes.
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- PLoS ONE, 2019, v. 14, n. 7, p. 1, doi. 10.1371/journal.pone.0213221
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- Article
Development and Validation of Confocal Endomicroscopy Diagnostic Criteria for Low-Grade Dysplasia in Barrett's Esophagus.
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- Clinical & Translational Gastroenterology, 2019, v. 10, n. 4, p. e00014, doi. 10.14309/ctg.0000000000000014
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- Article
Joining and Splitting Models with Markov Melding.
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- Bayesian Analysis, 2019, v. 14, n. 1, p. 81, doi. 10.1214/18-BA1104
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- Article
GPseudoRank: a permutation sampler for single cell orderings.
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- Bioinformatics, 2019, v. 35, n. 4, p. 611, doi. 10.1093/bioinformatics/bty664
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- Article
Metabolic regulation of pluripotency and germ cell fate through α‐ketoglutarate.
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- EMBO Journal, 2019, v. 38, n. 1, p. N.PAG, doi. 10.15252/embj.201899518
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- Article
Branch-recombinant Gaussian processes for analysis of perturbations in biological time series.
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- Bioinformatics, 2018, v. 34, n. 17, p. i1005, doi. 10.1093/bioinformatics/bty603
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- Article
Modelling of psychosocial and lifestyle predictors of peripartum depressive symptoms associated with distinct risk trajectories: a prospective cohort study.
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- Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-30874-z
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- Article
A graphical model approach visualizes regulatory relationships between genome-wide transcription factor binding profiles.
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- Briefings in Bioinformatics, 2018, v. 19, n. 1, p. 162, doi. 10.1093/bib/bbw102
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- Article
Clusternomics: Integrative context-dependent clustering for heterogeneous datasets.
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- PLoS Computational Biology, 2017, v. 13, n. 10, p. 1, doi. 10.1371/journal.pcbi.1005781
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- Article
A comparison of machine learning and Bayesian modelling for molecular serotyping.
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- BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3998-6
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- Article
Pseudotime estimation: deconfounding single cell time series.
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- Bioinformatics, 2016, v. 32, n. 19, p. 2973, doi. 10.1093/bioinformatics/btw372
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- Article
BTR: training asynchronous Boolean models using single-cell expression data.
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- BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-1235-y
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- Article
An optimal stratified Simon two-stage design.
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- Pharmaceutical Statistics, 2016, v. 15, n. 4, p. 333, doi. 10.1002/pst.1742
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- Article
Investigating inter-chromosomal regulatory relationships through a comprehensive meta-analysis of matched copy number and transcriptomics data sets.
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- BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2100-5
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- Article
A Meta-Analysis of Multiple Matched Copy Number and Transcriptomics Data Sets for Inferring Gene Regulatory Relationships.
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- PLoS ONE, 2014, v. 9, n. 8, p. 1, doi. 10.1371/journal.pone.0105522
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- Article
Key regulators control distinct transcriptional programmes in blood progenitor and mast cells.
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- EMBO Journal, 2014, v. 33, n. 11, p. 1212, doi. 10.1002/embj.201386825
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- Article
Two novel pathway analysis methods based on a hierarchical model.
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- Bioinformatics, 2014, v. 30, n. 5, p. 690, doi. 10.1093/bioinformatics/btt583
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- Article
STEME: A Robust, Accurate Motif Finder for Large Data Sets.
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- PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0090735
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- Article
Non-Replicating <i>Mycobacterium tuberculosis</i> Elicits a Reduced Infectivity Profile with Corresponding Modifications to the Cell Wall and Extracellular Matrix.
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- PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0087329
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- Article
Testing the Utility of an Integrated Analysis of Copy Number and Transcriptomics Datasets for Inferring Gene Regulatory Relationships
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- PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0063780
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- Article
Transcription factor and chromatin features predict genes associated with eQTLs.
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- Nucleic Acids Research, 2013, v. 41, n. 3, p. 1450, doi. 10.1093/nar/gks1339
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- Article
Comparison of Methods for Competitive Tests of Pathway Analysis.
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- PLoS ONE, 2012, v. 7, n. 7, p. 1, doi. 10.1371/journal.pone.0041018
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- Article
Transcription factor co-localization patterns affect human cell type-specific gene expression.
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- BMC Genomics, 2012, v. 13, n. 1, p. 263, doi. 10.1186/1471-2164-13-263
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- Article
Displaying R spatial statistics on Google dynamic maps with web applications created by Rwui.
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- International Journal of Health Geographics, 2012, v. 11, n. 1, p. 41, doi. 10.1186/1476-072X-11-41
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- Article
STEME: efficient EM to find motifs in large data sets.
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- Nucleic Acids Research, 2011, v. 39, n. 18, p. e126, doi. 10.1093/nar/gkr574
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- Article
Empirical Bayesian models for analysing molecular serotyping microarrays.
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- BMC Bioinformatics, 2011, v. 12, n. 1, p. 88, doi. 10.1186/1471-2105-12-88
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- Article
Creating web applications for spatial epidemiological analysis and mapping in R using Rwui.
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- Source Code for Biology & Medicine, 2011, v. 6, n. 1, p. 6, doi. 10.1186/1751-0473-6-6
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- Article
Variable structure motifs for transcription factor binding sites.
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- BMC Genomics, 2010, v. 11, p. 1, doi. 10.1186/1471-2164-11-30
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- Article
Statistical model comparison applied to common network motifs.
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- BMC Systems Biology, 2010, v. 4, p. 18, doi. 10.1186/1752-0509-4-18
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- Article
An integrated machine learning approach for predicting DosR-regulated genes in Mycobacterium tuberculosis.
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- BMC Systems Biology, 2010, v. 4, p. 37, doi. 10.1186/1752-0509-4-37
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- Article
Estimating Translational Selection in Eukaryotic Genomes.
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- Molecular Biology & Evolution, 2009, v. 26, n. 2, p. 451, doi. 10.1093/molbev/msn272
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- Article
A Bayesian Change point model for differential gene expression patterns of the DosR regulon of Mycobacterium tuberculosis.
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- BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-87
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- Article
Microarray analysis after RNA amplification can detect pronounced differences in gene expression using limma.
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- BMC Genomics, 2006, v. 7, p. 252, doi. 10.1186/1471-2164-7-252
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- Article
A universally applicable method of operon map prediction on minimally annotated genomes using conserved genomic context.
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- Nucleic Acids Research, 2005, v. 33, n. 10, p. 3253, doi. 10.1093/nar/gki634
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- Article
Reconstruction of gene networks using Bayesian learning and manipulation experiments.
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- Bioinformatics, 2004, v. 20, n. 17, p. 2934, doi. 10.1093/bioinformatics/bth337
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- Article
Solving the riddle of codon usage preferences: a test for translational selection.
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- Nucleic Acids Research, 2004, v. 32, n. 17, p. 5036, doi. 10.1093/nar/gkh834
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- Article
Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K‐12 genome.
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- Nucleic Acids Research, 2003, v. 31, n. 23, p. 6976, doi. 10.1093/nar/gkg897
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- Article
Analysis of whole-genome microarray replicates using mixed models.
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- Bioinformatics, 2003, v. 19, n. 1, p. 53, doi. 10.1093/bioinformatics/19.1.53
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- Article
Identification of structural domains in proteins by a graph heuristic.
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- Proteins, 1999, v. 35, n. 3, p. 338, doi. 10.1002/(SICI)1097-0134(19990515)35:3<338::AID-PROT8>3.0.CO;2-I
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- Article
Representation of amino acid sequences as two-dimensional point patterns.
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- Electrophoresis, 1997, v. 18, n. 15, p. 2709, doi. 10.1002/elps.1150181504
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- Article