Works matching AU Wendel, Jonathan F.

Results: 155

Genetic Regulatory Perturbation of Gene Expression Impacted by Genomic Introgression in Fiber Development of Allotetraploid Cotton.

Published in:

Advanced Science, 2024, v. 11, n. 40, p. 1, doi. 10.1002/advs.202401549

By:

Chen, Xinyuan;
Hu, Xiubao;
Li, Guo;
Grover, Corrinne E.;
You, Jiaqi;
Wang, Ruipeng;
Liu, Zhenping;
Qi, Zhengyang;
Luo, Xuanxuan;
Peng, Yabin;
Zhu, Mengmeng;
Zhang, Yuqi;
Lu, Sifan;
Zhang, Yuan‐ming;
Lin, Zhongxu;
Wendel, Jonathan F.;
Zhang, Xianlong;
Wang, Maojun

Publication type:

Article

Comparative Analysis of Floral Transcriptomes in Gossypium hirsutum (Malvaceae).

Published in:

Plants (2223-7747), 2025, v. 14, n. 4, p. 502, doi. 10.3390/plants14040502

By:

Nobles, Alexander;
Wendel, Jonathan F.;
Yoo, Mi-Jeong

Publication type:

Article

Evolution of the BBAA Component of Bread Wheat during Its History at the Allohexaploid Level.

Published in:

Plant Cell, 2014, v. 26, n. 7, p. 2761, doi. 10.1105/tpc.114.128439

By:

Zhang, Huakun;
Zhu, Bo;
Qi, Bao;
Gou, Xiaowan;
Dong, Yuzhu;
Xu, Chunming;
Zhang, Bangjiao;
Huang, Wei;
Liu, Chang;
Wang, Xutong;
Yang, Chunwu;
Zhou, Hao;
Kashkush, Khalil;
Feldman, Moshe;
Wendel, Jonathan F.;
Liu, Bao

Publication type:

Article

A Calmodulin-Like Gene (GbCML7) for Fiber Strength and Yield Improvement Identified by Resequencing Core Accessions of a Pedigree in Gossypium barbadense.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2021.815648

By:

Zhao, Nan;
Wang, Weiran;
Jiang, Kaiyun;
Grover, Corrinne E.;
Cheng, Cheng;
Pan, Zhuanxia;
Zhao, Cunpeng;
Zhu, Jiahui;
Li, Dan;
Wang, Meng;
Xiao, Li;
Yang, Jing;
Ning, Xinmin;
Li, Bin;
Xu, Haijiang;
Su, Ying;
Aierxi, Alifu;
Li, Pengbo;
Guo, Baosheng;
Wendel, Jonathan F.

Publication type:

Article

Embryogenic Calli Induction and Salt Stress Response Revealed by RNA-Seq in Diploid Wild Species Gossypium sturtianum and Gossypium raimondii.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.715041

By:

Nie, Hushuai;
Wang, Yali;
Wei, Chengcheng;
Grover, Corrinne E.;
Su, Ying;
Wendel, Jonathan F.;
Hua, Jinping

Publication type:

Article

Daily glycome and transcriptome profiling reveals polysaccharide structures and correlated glycosyltransferases critical for cotton fiber growth.

Published in:

Plant Journal, 2024, v. 120, n. 5, p. 1857, doi. 10.1111/tpj.17084

By:

Swaminathan, Sivakumar;
Grover, Corrinne E.;
Mugisha, Alither S.;
Sichterman, Lauren E.;
Lee, Youngwoo;
Yang, Pengcheng;
Mallery, Eileen L.;
Jareczek, Josef J.;
Leach, Alexis G.;
Xie, Jun;
Wendel, Jonathan F.;
Szymanski, Daniel B.;
Zabotina, Olga A.

Publication type:

Article

Cytonuclear interplay in auto‐ and allopolyploids: a multifaceted perspective from the Festuca‐Lolium complex.

Published in:

Plant Journal, 2024, v. 118, n. 4, p. 1102, doi. 10.1111/tpj.16659

By:

Shahbazi, Mehrdad;
Majka, Joanna;
Kubíková, Denisa;
Zwierzykowski, Zbigniew;
Glombik, Marek;
Wendel, Jonathan F.;
Sharbrough, Joel;
Hartmann, Stephan;
Szecówka, Marek;
Doležel, Jaroslav;
Bartoš, Jan;
Kopecký, David;
Kneřová, Jana

Publication type:

Article

Parental legacy versus regulatory innovation in salt stress responsiveness of allopolyploid cotton (Gossypium) species.

Published in:

Plant Journal, 2022, v. 111, n. 3, p. 872, doi. 10.1111/tpj.15863

By:

Dong, Yating;
Hu, Guanjing;
Grover, Corrinne E.;
Miller, Emma R.;
Zhu, Shuijin;
Wendel, Jonathan F.

Publication type:

Article

Nuclear–cytoplasmic balance: whole genome duplications induce elevated organellar genome copy number.

Published in:

Plant Journal, 2021, v. 108, n. 1, p. 219, doi. 10.1111/tpj.15436

By:

Fernandes Gyorfy, Matheus;
Miller, Emma R.;
Conover, Justin L.;
Grover, Corrinne E.;
Wendel, Jonathan F.;
Sloan, Daniel B.;
Sharbrough, Joel

Publication type:

Article

Reciprocal allopolyploid grasses (Festuca × Lolium) display stable patterns of genome dominance.

Published in:

Plant Journal, 2021, v. 107, n. 4, p. 1166, doi. 10.1111/tpj.15375

By:

Glombik, Marek;
Copetti, Dario;
Bartos, Jan;
Stoces, Stepan;
Zwierzykowski, Zbigniew;
Ruttink, Tom;
Wendel, Jonathan F.;
Duchoslav, Martin;
Dolezel, Jaroslav;
Studer, Bruno;
Kopecky, David

Publication type:

Article

Salt‐tolerance diversity in diploid and polyploid cotton (Gossypium) species.

Published in:

Plant Journal, 2020, v. 101, n. 5, p. 1135, doi. 10.1111/tpj.14580

By:

Dong, Yating;
Hu, Guanjing;
Yu, Jingwen;
Thu, Sandi Win;
Grover, Corrinne E.;
Zhu, Shuijin;
Wendel, Jonathan F.

Publication type:

Article

Polyploidy and Crop Improvement.

Published in:

Crop Science, 2006, v. 46, p. S3, doi. 10.2135/cropsci2006.07.0489tpg

By:

Udall, Joshua A.;
Wendel, Jonathan F.

Publication type:

Article

Polyploidy and Crop Improvement.

Published in:

Crop Science, 2006, v. 46, p. S-3, doi. 10.2135/cropsci2006.07.0489tpg

By:

Udall, Joshua A.;
Wendel, Jonathan F.

Publication type:

Article

Morphological Diversity and Relationships in the A‐Genome Cottons, Gossypium arboreum and G. herbaceum.

Published in:

Crop Science, 1994, v. 34, n. 2, p. 519, doi. 10.2135/cropsci1994.0011183X003400020039x

By:

Stanton, Marsha A.;
Stewart, J. McD.;
Percival, A. Edward;
Wendel, Jonathan F.

Publication type:

Article

Homoploid F<sub>1</sub> hybrids and segmental allotetraploids of japonica and indica rice subspecies show similar and enhanced tolerance to nitrogen deficiency than parental lines.

Published in:

Journal of Experimental Botany, 2021, v. 72, n. 15, p. 5612, doi. 10.1093/jxb/erab184

By:

Sun, Yue;
Wu, Ying;
Wang, Yangzhi;
Wang, Shengnan;
Wang, Xiaofei;
Li, Guo;
Zhang, Xue;
Liang, Zidong;
Li, Jiahao;
Gong, Lei;
Wendel, Jonathan F;
Wang, Deli;
Liu, Bao

Publication type:

Article

Domestication over Speciation in Allopolyploid Cotton Species: A Stronger Transcriptomic Pull.

Published in:

Genes, 2023, v. 14, n. 6, p. 1301, doi. 10.3390/genes14061301

By:

Jareczek, Josef J.;
Grover, Corrinne E.;
Hu, Guanjing;
Xiong, Xianpeng;
Arick II, Mark A.;
Peterson, Daniel G.;
Wendel, Jonathan F.

Publication type:

Article

Genetic mapping and comparative analysis of seven mutants related to seed fiber development in cotton.

Published in:

Theoretical & Applied Genetics, 2005, v. 111, n. 6, p. 1137, doi. 10.1007/s00122-005-0041-0

By:

Junkang Rong;
Pierce, Gary J.;
Waghmare, Vijay N.;
Rogers, Carl J.;
Desai, Aparna;
Chee, Peng W.;
May, O. Lloyd;
Gannaway, John R.;
Wendel, Jonathan F.;
Wilkins, Thea A.;
Paterson, Andrew H.

Publication type:

Article

Genetic mapping of a cross between Gossypium hirsutum (cotton) and the Hawaiian endemic, Gossypium tomentosum.

Published in:

Theoretical & Applied Genetics, 2005, v. 111, n. 4, p. 665, doi. 10.1007/s00122-005-2032-6

By:

Waghmare, Vijay N.;
Rong, Junkang;
Rogers, Carl J.;
Pierce, Gary J.;
Wendel, Jonathan F.;
Paterson, Andrew H.

Publication type:

Article

Diversity analysis of cotton (Gossypium hirsutum L.) germplasm using the CottonSNP63K Array.

Published in:

BMC Plant Biology, 2017, v. 17, p. 1, doi. 10.1186/s12870-017-0981-y

By:

Hinze, Lori L.;
Hulse-Kemp, Amanda M.;
Wilson, Iain W.;
Qian-Hao Zhu;
Llewellyn, Danny J.;
Taylor, Jen M.;
Spriggs, Andrew;
Fang, David D.;
Ulloa, Mauricio;
Burke, John J.;
Giband, Marc;
Lacape, Jean-Marc;
Van Deynze, Allen;
Udall, Joshua A.;
Scheffler, Jodi A.;
Hague, Steve;
Wendel, Jonathan F.;
Pepper, Alan E.;
Frelichowski, James;
Lawley, Cindy T.

Publication type:

Article

Duplicate gene evolution, homoeologous recombination, and transcriptome characterization in allopolyploid cotton.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 302, doi. 10.1186/1471-2164-13-302

By:

Flagel, Lex E.;
Wendel, Jonathan F.;
Udall, Joshua A.

Publication type:

Article

Parallel expression evolution of oxidative stress-related genes in fiber from wild and domesticated diploid and polyploid cotton (Gossypium).

Published in:

BMC Genomics, 2009, v. 10, p. 378, doi. 10.1186/1471-2164-10-378

By:

Chaudhary, Bhupendra;
Hovav, Ran;
Flagel, Lex;
Mittler, Ron;
Wendel, Jonathan F.

Publication type:

Article

Spotted cotton oligonucleotide microarrays for gene expression analysis.

Published in:

BMC Genomics, 2007, v. 8, p. 81, doi. 10.1186/1471-2164-8-81

By:

Udall, Joshua A;
Flagel, Lex E;
Foo Cheung;
Woodward, Andrew W;
Hovav, Ran;
Rapp, Ryan A;
Swanson, Jordan M;
Lee, Jinsuk J;
Gingle, Alan R;
Nettleton, Dan;
Town, Christopher D;
Chen, Z Jeffrey;
Wendel, Jonathan F

Publication type:

Article

The complex genome and adaptive evolution of polyploid Chinese pepper (Zanthoxylum armatum and Zanthoxylum bungeanum).

Published in:

Plant Biotechnology Journal, 2023, v. 21, n. 1, p. 78, doi. 10.1111/pbi.13926

By:

Hu, Lisong;
Xu, Zhongping;
Fan, Rui;
Wang, Guanying;
Wang, Fuqiu;
Qin, Xiaowei;
Yan, Lin;
Ji, Xunzhi;
Meng, Minghui;
Sim, Soonliang;
Chen, Wei;
Hao, Chaoyun;
Wang, Qinghuang;
Zhu, Huaguo;
Zhu, Shu;
Xu, Pan;
Zhao, Hui;
Lindsey, Keith;
Daniell, Henry;
Wendel, Jonathan F.

Publication type:

Article

Reshuffling of the ancestral core-eudicot genome shaped chromatin topology and epigenetic modification in Panax.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29561-5

By:

Wang, Zhen-Hui;
Wang, Xin-Feng;
Lu, Tianyuan;
Li, Ming-Rui;
Jiang, Peng;
Zhao, Jing;
Liu, Si-Tong;
Fu, Xue-Qi;
Wendel, Jonathan F.;
Van de Peer, Yves;
Liu, Bao;
Li, Lin-Feng

Publication type:

Article

Reticulate Evolution Helps Explain Apparent Homoplasy in Floral Biology and Pollination in Baobabs (Adansonia; Bombacoideae; Malvaceae).

Published in:

Systematic Biology, 2020, v. 69, n. 3, p. 462, doi. 10.1093/sysbio/syz073

By:

Karimi, Nisa;
Grover, Corrinne E;
Gallagher, Joseph P;
Wendel, Jonathan F;
Ané, Cécile;
Baum, David A

Publication type:

Article

Intergenomic gene transfer in diploid and allopolyploid Gossypium.

Published in:

BMC Plant Biology, 2019, v. 19, n. 1, p. 1, doi. 10.1186/s12870-019-2041-2

By:

Zhao, Nan;
Grover, Corrinne E.;
Chen, Zhiwen;
Wendel, Jonathan F.;
Hua, Jinping

Publication type:

Article

Gene expression in developing fibres of Upland cotton (Gossypium hirsutum L.) was massively altered by domestication.

Published in:

BMC Biology, 2010, v. 8, p. 139, doi. 10.1186/1741-7007-8-139

By:

Rapp, Ryan A.;
Haigler, Candace H.;
Flagel, Lex;
Hovav, Ran H.;
Udall, Joshua A.;
Wendel, Jonathan F.

Publication type:

Article

Genomic expression dominance in allopolyploids.

Published in:

BMC Biology, 2009, v. 7, p. 1, doi. 10.1186/1741-7007-7-18

By:

Rapp, Ryan A.;
Udall, Joshua A.;
Wendel, Jonathan F.

Publication type:

Article

Meiotic pairing irregularity and homoeologous chromosome compensation cause rapid karyotype variation in synthetic allotetraploid wheat.

Published in:

New Phytologist, 2023, v. 239, n. 2, p. 606, doi. 10.1111/nph.18953

By:

Zhao, Jing;
Li, Juzuo;
Lv, Ruili;
Wang, Bin;
Zhang, Zhibin;
Yu, Tingting;
Liu, Shuhan;
Xun, Hongwei;
Xu, Chunming;
Wendel, Jonathan F.;
Liu, Bao

Publication type:

Article

The Genome Sequence of Gossypioides kirkii Illustrates a Descending Dysploidy in Plants.

Published in:

Frontiers in Plant Science, 2019, v. 10, p. 1, doi. 10.3389/fpls.2019.01541

By:

Udall, Joshua A.;
Long, Evan;
Ramaraj, Thiruvarangan;
Conover, Justin L.;
Yuan, Daojun;
Grover, Corrinne E.;
Gong, Lei;
Arick II, Mark A.;
Masonbrink, Rick E.;
Peterson, Daniel G.;
Wendel, Jonathan F.

Publication type:

Article

Segmental allotetraploidy generates extensive homoeologous expression rewiring and phenotypic diversity at the population level in rice.

Published in:

Molecular Ecology, 2017, v. 26, n. 20, p. 5451, doi. 10.1111/mec.14297

By:

Sun, Yue;
Wu, Ying;
Yang, Chunwu;
Sun, Shuai;
Lin, Xiuyun;
Liu, Lixia;
Xu, Chunming;
Wendel, Jonathan F.;
Gong, Lei;
Liu, Bao

Publication type:

Article

Insights into the Ecology and Evolution of Polyploid Plants through Network Analysis.

Published in:

Molecular Ecology, 2016, v. 25, n. 11, p. 2644, doi. 10.1111/mec.13626

By:

Gallagher, Joseph P.;
Grover, Corrinne E.;
Hu, Guanjing;
Wendel, Jonathan F.

Publication type:

Article

Genome-wide characterization of the GRF family and their roles in response to salt stress in Gossypium.

Published in:

BMC Genomics, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s12864-020-06986-0

By:

Cao, Jun-Feng;
Huang, Jin-Quan;
Liu, Xia;
Huang, Chao-Chen;
Zheng, Zi-Shou;
Zhang, Xiu-Fang;
Shangguan, Xiao-Xia;
Wang, Ling-Jian;
Zhang, Yu-Gao;
Wendel, Jonathan F.;
Grover, Corrinne E.;
Chen, Zhi-Wen

Publication type:

Article

Evolutionary dynamics of mitochondrial genomes and intracellular transfers among diploid and allopolyploid cotton species.

Published in:

BMC Biology, 2025, v. 23, n. 1, p. 1, doi. 10.1186/s12915-025-02115-z

By:

Kong, Jiali;
Wang, Jie;
Nie, Liyun;
Tembrock, Luke R.;
Zou, Changsong;
Kan, Shenglong;
Ma, Xiongfeng;
Wendel, Jonathan F.;
Wu, Zhiqiang

Publication type:

Article

Coordinated and Fine-Scale Control of Homoeologous Gene Expression in Allotetraploid Cotton.

Published in:

Journal of Heredity, 2009, v. 100, n. 4, p. 487, doi. 10.1093/jhered/esp003

By:

Flagel, Lex E.;
Liping Chen;
Chaudhary, Bhupendra;
Wendel, Jonathan F.

Publication type:

Article

Infraspecific DNA Methylation Polymorphism in Cotton (Gossypium hirsutum L.).

Published in:

Journal of Heredity, 2006, v. 97, n. 5, p. 444, doi. 10.1093/jhered/esl023

By:

Keyte, Anna L.;
Percifield, Ryan;
Bao Liu;
Wendel, Jonathan F.

Publication type:

Article

Variation in cytonuclear expression accommodation among allopolyploid plants.

Published in:

Genetics, 2022, v. 222, n. 2, p. 1, doi. 10.1093/genetics/iyac118

By:

Grover, Corrinne E.;
Forsythe, Evan S.;
Sharbrough, Joel;
Miller, Emma R.;
Conover, Justin L.;
DeTar, Rachael A.;
Chavarro, Carolina;
Arick, Mark A.;
Peterson, Daniel G.;
Leal-Bertioli, Soraya C. M.;
Sloan, Daniel B.;
Wendel, Jonathan F.

Publication type:

Article

Gene-Expression Novelty in Allopolyploid Cotton: A Proteomic Perspective.

Published in:

Genetics, 2015, v. 200, n. 1, p. 91, doi. 10.1534/genetics.115.174367

By:

Guanjing Hu;
Jin Koh;
Mi-Jeong Yoo;
Sixue Chen;
Wendel, Jonathan F.

Publication type:

Article

Genomically Biased Accumulation of Seed Storage Proteins in Allopolyploid Cotton.

Published in:

Genetics, 2011, v. 189, n. 3, p. 1103, doi. 10.1534/genetics.111.132407

By:

Hu, Guanjing;
Houston, Norma L.;
Pathak, Dharminder;
Schmidt, Linnea;
Thelen, Jay J.;
Wendel, Jonathan F.

Publication type:

Article

Reciprocal Silencing, Transcriptional Bias and Functional Divergence of Homeologs in Polyploid Cotton (Gossypium).

Published in:

Genetics, 2009, v. 182, n. 2, p. 503, doi. 10.1534/genetics.109.102608

By:

Chaudhary, Bhupendra;
Flagel, Lex;
Stupar, Robert M.;
Udall, Joshua A.;
Verma, Neetu;
Springer, Nathan M.;
Wendel, Jonathan F.

Publication type:

Article

Parallel Domestication, Convergent Evolution and Duplicated Gene Recruitment in Allopolyploid Cotton.

Published in:

Genetics, 2008, v. 179, n. 3, p. 1725, doi. 10.1534/genetics.108.089656

By:

Hovav, Ran;
Chaudhary, Bhupendra;
Udall, Joshua A.;
Flagel, Lex;
Wendel, Jonathan F.

Publication type:

Article

Meta-analysis of Polyploid Cotton QTL Shows Unequal Contributions of Subgenomes to a Complex Network of Genes and Gene Clusters Implicated in Lint Fiber Development.

Published in:

Genetics, 2007, v. 176, n. 4, p. 2577, doi. 10.1534/genetics.107.074518

By:

Rong, Junkang;
Feltus, F. Alex;
Waghmare, Vijay N.;
Pierce, Gary J.;
Chee, Peng W.;
Draye, Xavier;
Saranga, Yehoshua;
Wright, Robert J.;
Wilkins, Thea A.;
May, O. Lloyd;
Smith, C. Wayne;
Gannaway, John R.;
Wendel, Jonathan F.;
Paterson, Andrew H.

Publication type:

Article

A Novel Approach for Characterizing Expression Levels of Genes Duplicated by Polyploidy.

Published in:

Genetics, 2006, v. 173, n. 3, p. 1823, doi. 10.1534/genetics.106.058271

By:

Udall, Joshua A.;
Swanson, Jordan M.;
Nettleton, Dan;
Percifield, Ryan J.;
Wendel, Jonathan F.

Publication type:

Article

Allele-Specific, Bidirectional Silencing of an Alcohol Dehydrogenase Gene in Different Organs of Interspecific Diploid Cotton Hybrids.

Published in:

Genetics, 2005, v. 171, n. 4, p. 2139, doi. 10.1534/genetics.105.047357

By:

Adams, Keith L.;
Wendel, Jonathan F.

Publication type:

Article

Organ-Specific Silencing of Duplicated Genes in a Newly Synthesized Cotton Allotetraploid.

Published in:

Genetics, 2004, v. 168, n. 4, p. 2217, doi. 10.1534/genetics.104.033522

By:

Adams, Keith L.;
Percifield, Ryan;
Wendel, Jonathan F.

Publication type:

Article

A 3347-Locus Genetic Recombination Map of Sequence-Tagged Sites Reveals features of Genome Organization, Transmission and Evolution of Cotton (Gossypium).

Published in:

Genetics, 2004, v. 166, n. 1, p. 389, doi. 10.1534/genetics.166.1.389

By:

Rong, Junkang;
Abbey, Colette;
Bowers, John E.;
Brubaker, Curt L.;
Chang, Charlene;
Chee, Peng W.;
Delmonte, Terrye A.;
Ding, Xiaoling;
Garza, Juan J.;
Marler, Barry S.;
Park, Chan-hwa;
Pierce, Gary J.;
Rainey, Katy M.;
Rastogi, Vipin K.;
Schulze, Stefan R.;
Trolinder, Norma L.;
Wendel, Jonathan F.;
Wilkins, Thea A.;
Williams-Coplin, T. Dawn

Publication type:

Article

Rapid proliferation and nucleolar organizer targeting centromeric retrotransposons in cotton.

Published in:

Plant Journal, 2016, v. 88, n. 6, p. 992, doi. 10.1111/tpj.13309

By:

Han, Jinlei;
Masonbrink, Rick E.;
Shan, Wenbo;
Song, Fengqin;
Zhang, Jisen;
Yu, Weichang;
Wang, Kunbo;
Wu, Yufeng;
Tang, Haibao;
Wendel, Jonathan F.;
Wang, Kai

Publication type:

Article

Microcolinearity and genome evolution in the AdhA region of diploid and polyploid cotton ( Gossypium).

Published in:

Plant Journal, 2007, v. 50, n. 6, p. 995, doi. 10.1111/j.1365-313X.2007.03102.x

By:

Grover, Corrinne E.;
HyeRan Kim;
Wing, Rod A.;
Paterson, Andrew H.;
Wendel, Jonathan F.

Publication type:

Article

The history and disposition of transposable elements in polyploid Gossypium.

Published in:

Genome, 2010, v. 53, n. 8, p. 599, doi. 10.1139/G10-038

By:

Guanjing Hu;
Hawkins, Jennifer S.;
Grover, Corrinne E.;
Wendel, Jonathan F.

Publication type:

Article

Phylogenetic determination of the pace of transposable element proliferation in plants: copia and LINE-like elements in Gossypium.

Published in:

Genome, 2008, v. 51, n. 1, p. 11, doi. 10.1139/G07-099

By:

Hawkins, Jennifer S.;
Hu, Guanjing;
Rapp, Ryan A.;
Grafenberg, Jessie L.;
Wendel, Jonathan F.

Publication type:

Article