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GSAlign: an efficient sequence alignment tool for intra-species genomes.
- Published in:
- BMC Genomics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12864-020-6569-1
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- Publication type:
- Article
MAGIC-web: a platform for untargeted and targeted N-linked glycoprotein identification.
- Published in:
- Nucleic Acids Research, 2016, v. 44, n. W1, p. W575, doi. 10.1093/nar/gkw254
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- Publication type:
- Article
TMPad: an integrated structural database for helix-packing folds in transmembrane proteins.
- Published in:
- Nucleic Acids Research, 2011, v. 39, n. suppl_1, p. D347, doi. 10.1093/nar/gkq1255
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- Publication type:
- Article
MaXIC-Q Web: a fully automated web service using statistical and computational methods for protein quantitation based on stable isotope labeling and LC–MS.
- Published in:
- Nucleic Acids Research, 2009, v. 37, n. suppl_2, p. W661, doi. 10.1093/nar/gkp476
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- Publication type:
- Article
BIOSMILE web search: a web application for annotating biomedical entities and relations.
- Published in:
- Nucleic Acids Research, 2008, v. 36, n. suppl_2, p. W390, doi. 10.1093/nar/gkn319
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- Publication type:
- Article
The Multi-Q web server for multiplexed protein quantitation.
- Published in:
- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W707
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- Publication type:
- Article
LBERT: Lexically aware Transformer-based Bidirectional Encoder Representation model for learning universal bio-entity relations.
- Published in:
- Bioinformatics, 2021, v. 37, n. 3, p. 404, doi. 10.1093/bioinformatics/btaa721
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- Publication type:
- Article
APPROXIMATION ALGORITHMS FOR THE ASSEMBLE LINE CREW SCHEDULING PROBLEM.
- Published in:
- Mathematics of Operations Research, 1984, v. 9, n. 3, p. 376, doi. 10.1287/moor.9.3.376
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- Publication type:
- Article
CloudDOE: A User-Friendly Tool for Deploying Hadoop Clouds and Analyzing High-Throughput Sequencing Data with MapReduce.
- Published in:
- PLoS ONE, 2014, v. 9, n. 6, p. 1, doi. 10.1371/journal.pone.0098146
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- Publication type:
- Article
Efficient and Interpretable Prediction of Protein Functional Classes by Correspondence Analysis and Compact Set Relations.
- Published in:
- PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0075542
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- Publication type:
- Article
Prediction of Carbohydrate Binding Sites on Protein Surfaces with 3-Dimensional Probability Density Distributions of Interacting Atoms.
- Published in:
- PLoS ONE, 2012, v. 7, n. 7, p. 1, doi. 10.1371/journal.pone.0040846
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- Publication type:
- Article
Protein-Protein Interaction Site Predictions with Three- Dimensional Probability Distributions of Interacting Atoms on Protein Surfaces.
- Published in:
- PLoS ONE, 2012, v. 7, n. 6, p. 1, doi. 10.1371/journal.pone.0037706
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- Publication type:
- Article
Computational Comparative Study of Tuberculosis Proteomes Using a Model Learned from Signal Peptide Structures.
- Published in:
- PLoS ONE, 2012, v. 7, n. 4, p. 1, doi. 10.1371/journal.pone.0035018
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- Publication type:
- Article
Rationalization and Design of the Complementarity Determining Region Sequences in an Antibody-Antigen Recognition Interface.
- Published in:
- PLoS ONE, 2012, v. 7, n. 3, p. 1, doi. 10.1371/journal.pone.0033340
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- Publication type:
- Article
Improving the Alignment Quality of Consistency Based Aligners with an Evaluation Function Using Synonymous Protein Words.
- Published in:
- PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0027872
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- Publication type:
- Article
Phosphoproteomics Identifies Oncogenic Ras Signaling Targets and Their Involvement in Lung Adenocarcinomas.
- Published in:
- PLoS ONE, 2011, v. 6, n. 5, p. 1, doi. 10.1371/journal.pone.0020199
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- Publication type:
- Article
PSLDoc: Protein subcellular localization prediction based on gapped-dipeptides and probabilistic latent semantic analysis.
- Published in:
- Proteins, 2008, v. 72, n. 2, p. 693, doi. 10.1002/prot.21944
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- Publication type:
- Article
A semantic frame-based intelligent agent for topic detection.
- Published in:
- Soft Computing - A Fusion of Foundations, Methodologies & Applications, 2017, v. 21, n. 2, p. 391, doi. 10.1007/s00500-015-1695-4
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- Publication type:
- Article
Hierarchical and programmable one-pot synthesis of oligosaccharides.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07618-8
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- Publication type:
- Article
BERT-based ensemble learning approach for the BioCreative VII challenges: full-text chemical identification and multi-label classification in PubMed articles.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2022, v. 2022, p. 1, doi. 10.1093/database/baac056
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- Publication type:
- Article
Statistical principle-based approach for recognizing and normalizing microRNAs described in scientific literature.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz030
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- Publication type:
- Article
LPTK: a linguistic pattern-aware dependency tree kernel approach for the BioCreative VI CHEMPROT task.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay108
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- Publication type:
- Article
Biomarker identification of hepatocellular carcinoma using a methodical literature mining strategy.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax082
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- Publication type:
- Article
PIPE: a protein-protein interaction passage extraction module for BioCreative challenge.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw101
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- Publication type:
- Article
MET network in PubMed: a text-mined network visualization and curation system.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2016, v. 2016, p. 1, doi. 10.1093/database/baw090
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- Publication type:
- Article
LiverCancerMarkerRIF: a liver cancer biomarker interactive curation system combining text mining and expert annotations.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2014, v. 2014, p. 1, doi. 10.1093/database/ bau085
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- Publication type:
- Article
T-HOD: a literature-based candidate gene database for hypertension, obesity and diabetes.
- Published in:
- Database: The Journal of Biological Databases & Curation, 2013, v. 2013, p. 1, doi. 10.1093/database/bas061
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- Publication type:
- Article
Lipid exposure prediction enhances the inference of rotational angles of transmembrane helices.
- Published in:
- BMC Bioinformatics, 2013, v. 14, n. 1, p. 2, doi. 10.1186/1471-2105-14-304
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- Publication type:
- Article
Prediction of nuclear proteins using nuclear translocation signals proposed by probabilistic latent semantic indexing.
- Published in:
- BMC Bioinformatics, 2012, v. 13, n. Suppl 17, p. 1, doi. 10.1186/1471-2105-13-S17-S13
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- Publication type:
- Article
HypertenGene: extracting key hypertension genes from biomedical literature with position and automatically-generated template features.
- Published in:
- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S15-S9
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- Publication type:
- Article
Protein subcellular localization prediction of eukaryotes using a knowledge-based approach.
- Published in:
- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-S15-S8
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- Publication type:
- Article
Semi-automatic conversion of BioProp semantic annotation to PASBio annotation.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S18
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- Publication type:
- Article
Predicting RNA-binding sites of proteins using support vector machines and evolutionary information.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S6
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- Publication type:
- Article
Emerging strengths in Asia Pacific bioinformatics.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S12-S1
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- Publication type:
- Article
Exploiting likely-positive and unlabeled data to improve the identification of protein-protein interaction articles.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-S1-S3
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- Publication type:
- Article
Detection of the inferred interaction network in hepatocellular carcinoma from EHCO (Encyclopedia of Hepatocellular Carcinoma genes Online).
- Published in:
- BMC Bioinformatics, 2007, v. 8, p. 1, doi. 10.1186/1471-2105-8-66
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- Publication type:
- Article
NERBio: using selected word conjunctions, term normalization, and global patterns to improve biomedical named entity recognition.
- Published in:
- BMC Bioinformatics, 2006, v. 7, p. S11, doi. 10.1186/1471-2105-7-S5-S11
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- Publication type:
- Article
Medical knowledge infused convolutional neural networks for cohort selection in clinical trials.
- Published in:
- 2019
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- Publication type:
- journal article
Coreference resolution of medical concepts in discharge summaries by exploiting contextual information.
- Published in:
- Journal of the American Medical Informatics Association, 2012, v. 19, n. 5, p. 888, doi. 10.1136/amiajnl-2012-000808
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- Publication type:
- Article
N-GlyDE: a two-stage N-linked glycosylation site prediction incorporating gapped dipeptides and pattern-based encoding.
- Published in:
- Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-52341-z
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- Publication type:
- Article
GANA—a genetic algorithm for NMR backbone resonance assignment.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. 14, p. 4593, doi. 10.1093/nar/gki768
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- Publication type:
- Article
HYPROSP: a hybrid protein secondary structure prediction algorithm—a knowledge-based approach.
- Published in:
- Nucleic Acids Research, 2004, v. 32, n. 17, p. 5059
- By:
- Publication type:
- Article
Statistical principle-based approach for gene and protein related object recognition.
- Published in:
- Journal of Cheminformatics, 2018, v. 10, n. 1, p. 1, doi. 10.1186/s13321-018-0314-7
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- Publication type:
- Article
Guest Editor's Foreword.
- Published in:
- International Journal of Computational Geometry & Applications, 1993, v. 3, n. 3, p. 225, doi. 10.1142/S0218195993000300
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- Publication type:
- Article
Ontological Support in Modeling Learners' Problem Solving Process.
- Published in:
- Educational Technology & Society, 2005, v. 8, n. 4, p. 64
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- Publication type:
- Article
A flexible template generation and matching method with applications for publication reference metadata extraction.
- Published in:
- Journal of the Association for Information Science & Technology, 2021, v. 72, n. 1, p. 32, doi. 10.1002/asi.24391
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- Publication type:
- Article
Surveying biomedical relation extraction: a critical examination of current datasets and the proposal of a new resource.
- Published in:
- Briefings in Bioinformatics, 2024, v. 25, n. 3, p. 1, doi. 10.1093/bib/bbae132
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- Publication type:
- Article
Biomedical named entity recognition and linking datasets: survey and our recent development.
- Published in:
- Briefings in Bioinformatics, 2020, v. 21, n. 6, p. 2219, doi. 10.1093/bib/bbaa054
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- Publication type:
- Article
Comparative Proteomic Analysis of Proteins Involved in the Tumorigenic Process of Seminal Vesicle Carcinoma in Transgenic Mice.
- Published in:
- International Journal of Proteomics, 2010, p. 1, doi. 10.1155/2010/726968
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- Publication type:
- Article
ILeukin10Pred: A Computational Approach for Predicting IL-10-Inducing Immunosuppressive Peptides Using Combinations of Amino Acid Global Features.
- Published in:
- Biology (2079-7737), 2022, v. 11, n. 1, p. 5, doi. 10.3390/biology11010005
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- Publication type:
- Article