Works matching AU Weissman, Jonathan

Results: 90

Strain conformation, primary structure and the propagation of the yeast prion [PSI<sup>+</sup>].

Published in:

Nature Structural & Molecular Biology, 2011, v. 18, n. 4, p. 493, doi. 10.1038/nsmb.2030

By:

Verges, Katherine J.;
Smith, Melanie H.;
Toyama, Brandon H.;
Weissman, Jonathan S.

Publication type:

Article

rRNA:mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments.

Published in:

Bioinformatics, 2013, v. 29, n. 12, p. 1488, doi. 10.1093/bioinformatics/btt184

By:

O’Connor, Patrick B. F.;
Li, Gene-Wei;
Weissman, Jonathan S.;
Atkins, John F.;
Baranov, Pavel V.

Publication type:

Article

Inference of single-cell phylogenies from lineage tracing data using Cassiopeia.

Published in:

Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02000-8

By:

Jones, Matthew G;
Khodaverdian, Alex;
Quinn, Jeffrey J;
Chan, Michelle M;
Hussmann, Jeffrey A;
Wang, Robert;
Xu, Chenling;
Weissman, Jonathan S;
Yosef, Nir

Publication type:

Article

CRISPRi-based radiation modifier screen identifies long non-coding RNA therapeutic targets in glioma.

Published in:

Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-01995-4

By:

Liu, S. John;
Malatesta, Martina;
Lien, Brian V.;
Saha, Parna;
Thombare, Shivani S.;
Hong, Sung Jun;
Pedraza, Leslie;
Koontz, Mark;
Seo, Kyounghee;
Horlbeck, Max A.;
He, Daniel;
Birk, Harjus S.;
Jain, Miten;
Olsen, Hugh E.;
Akeson, Mark;
Weissman, Jonathan S.;
Monje, Michelle;
Gupta, Nalin;
Raleigh, David R.;
Ullian, Erik M.

Publication type:

Article

KSHV 2.0: A Comprehensive Annotation of the Kaposi's Sarcoma-Associated Herpesvirus Genome Using Next-Generation Sequencing Reveals Novel Genomic and Functional Features.

Published in:

PLoS Pathogens, 2014, v. 10, n. 1, p. 1, doi. 10.1371/journal.ppat.1003847

By:

Arias, Carolina;
Weisburd, Ben;
Stern-Ginossar, Noam;
Mercier, Alexandre;
Madrid, Alexis S.;
Bellare, Priya;
Holdorf, Meghan;
Weissman, Jonathan S.;
Ganem, Don

Publication type:

Article

A mitochondrial-focused genetic interaction map reveals a scaffold-like complex required for inner membrane organization in mitochondria.

Published in:

Journal of Cell Biology, 2011, v. 195, n. 2, p. 323, doi. 10.1083/jcb.201107053

By:

Hoppins, Suzanne;
Collins, Sean R.;
Cassidy-Stone, Ann;
Hummel, Eric;
DeVay, Rachel M.;
Lackner, Laura L.;
Westermann, Benedikt;
Schuldiner, Maya;
Weissman, Jonathan S.;
Nunnari, Jodi

Publication type:

Article

Regulated Ire 1-dependent decay of messenger RNAs in mammalian cells.

Published in:

Journal of Cell Biology, 2009, v. 186, n. 3, p. 323, doi. 10.1083/jcb.200903014

By:

Hollien, Julie;
Lin, Jonathan H.;
Li, Han;
Stevens, Nicole;
Walter, Peter;
Weissman, Jonathan S.

Publication type:

Article

Oxidative protein folding in eukaryotes: mechanisms and consequences.

Published in:

Journal of Cell Biology, 2004, v. 164, n. 3, p. 341, doi. 10.1083/jcb.200311055

By:

Tu, Benjamin P.;
Weissman, Jonathan S.

Publication type:

Article

An engineered transcriptional reporter of protein localization identifies regulators of mitochondrial and ER membrane protein trafficking in high-throughput CRISPRi screens.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.69142

By:

Coukos, Robert;
Yao, David;
Sanchez, Mateo I.;
Strand, Eric T.;
Olive, Meagan E.;
Udeshi, Namrata D.;
Weissman, Jonathan S.;
Carr, Steven A.;
Bassik, Michael C.;
Ting, Alice Y.

Publication type:

Article

Genome-wide CRISPRi screening identifies OCIAD1 as a prohibitin client and regulatory determinant of mitochondrial Complex III assembly in human cells.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.67624

By:

Le Vasseur, Maxence;
Friedman, Jonathan;
Jost, Marco;
Jiawei Xu;
Yamada, Justin;
Kampmann, Martin;
Horlbeck, Max A.;
Salemi, Michelle R.;
Phinney, Brett S.;
Weissman, Jonathan S.;
Nunnari, Jodi

Publication type:

Article

CRISPR-based functional genomics in human dendritic cells.

Published in:

eLife, 2021, p. 1, doi. 10.7554/eLife.65856

By:

Jost, Marco;
Jacobson, Amy N.;
Hussmann, Jeffrey A.;
Cirolia, Giana;
Fischbach, Michael A.;
Weissman, Jonathan S.

Publication type:

Article

A Luminal Surveillance Complex that Selects Misfolded Glycoproteins for ER Associated Degradation.

Published in:

FASEB Journal, 2007, v. 21, n. 5, p. A153

By:

Weissman, Jonathan

Publication type:

Article

Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation.

Published in:

Molecular Systems Biology, 2014, v. 10, n. 12, p. 1, doi. 10.15252/msb.20145524

By:

Pop, Cristina;
Rouskin, Silvi;
Ingolia, Nicholas T;
Han, Lu;
Phizicky, Eric M;
Weissman, Jonathan S;
Koller, Daphne

Publication type:

Article

Automated identification of pathways from quantitative genetic interaction data.

Published in:

Molecular Systems Biology, 2010, v. 6, n. 1, p. 1, doi. 10.1038/msb.2010.27

By:

Battle, Alexis;
Jonikas, Martin C;
Walter, Peter;
Weissman, Jonathan S;
Koller, Daphne

Publication type:

Article

A general lack of compensation for gene dosage in yeast.

Published in:

Molecular Systems Biology, 2010, v. 6, n. 1, p. 1, doi. 10.1038/msb.2010.19

By:

Springer, Michael;
Weissman, Jonathan S;
Kirschner, Marc W

Publication type:

Article

Backup without redundancy: genetic interactions reveal the cost of duplicate gene loss.

Published in:

Molecular Systems Biology, 2007, v. 3, n. 1, p. 86, doi. 10.1038/msb4100127

By:

Ihmels, Jan;
Collins, Sean R;
Schuldiner, Maya;
Krogan, Nevan J;
Weissman, Jonathan S

Publication type:

Article

Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network.

Published in:

Nature Biotechnology, 2008, v. 26, n. 11, p. 1251, doi. 10.1038/nbt.1499

By:

Chechik, Gal;
Oh, Eugene;
Rando, Oliver;
Weissman, Jonathan;
Regev, Aviv;
Koller, Daphne

Publication type:

Article

H3K4 Trimethylation by Set1 Promotes Efficient Termination by the Nrd1-Nab3-Sen1 Pathway.

Published in:

Molecular & Cellular Biology, 2011, v. 31, n. 17, p. 3569, doi. 10.1128/MCB.05590-11

By:

Terzi, Nihal;
Churchman, L. Stirling;
Vasiljeva, Lidia;
Weissman, Jonathan;
Buratowski, Stephen

Publication type:

Article

Mechanism of Prion Propagation: Amyloid Growth Occurs by Monomer Addition.

Published in:

PLoS Biology, 2004, v. 2, n. 10, p. 1582, doi. 10.1371/journal.pbio.0020321

By:

Collins, Sean R.;
Douglass, Adam;
Vale, Ronald D.;
Weissman, Jonathan S.

Publication type:

Article

Mechanism of Prion Propagation: Amyloid Growth Occurs by Monomer Addition.

Published in:

PLoS Biology, 2004, v. 2, n. 9, p. 1, doi. 10.1371/journal.pbio.0020321

By:

Collins, Sean R;
Douglass, Adam;
Vale, Ronald D;
Weissman, Jonathan S

Publication type:

Article

Dissection and Design of Yeast Prions.

Published in:

PLoS Biology, 2004, v. 2, n. 4, p. 442, doi. 10.1371/journal.pbio.0020086

By:

Osherovich, Lev Z.;
Cox, Brian S.;
Tuite, Mick F.;
Weissman, Jonathan S.

Publication type:

Article

Dissection and Design of Yeast Prions.

Published in:

PLoS Biology, 2004, v. 2, n. 3, p. 1, doi. 10.1371/journal.pbio.0020086

By:

Osherovich, Lev Z;
Cox, Brian S;
Tuite, Mick F;
Weissman, Jonathan S

Publication type:

Article

Release of both native and non-native proteins from a cis-only GroEL ternary complex.

Published in:

Nature, 1996, v. 383, n. 6595, p. 96, doi. 10.1038/383096a0

By:

Burston, Steven G.;
Weissman, Jonathan S.

Publication type:

Article

Efficient catalysis of disulphide bond rearrangements by protein disulphide isomerase.

Published in:

Nature, 1993, v. 365, n. 6442, p. 185, doi. 10.1038/365185a0

By:

Weissman, Jonathan S.;
Kim, Peter S.

Publication type:

Article

Origins and kinetic consequences of diversity in Sup35 yeast prion fibers.

Published in:

Nature Structural Biology, 2002, v. 9, n. 5, p. 389

By:

DePace, Angela H.;
Weissman, Jonathan S.

Publication type:

Article

Thinking outside the box: new insights into the mechanism of GroEL-mediated protein folding.

Published in:

Nature Structural Biology, 1999, v. 6, n. 7, p. 597

By:

Wang, Jue D.;
Weissman, Jonathan S.

Publication type:

Article

New factors for protein transport identified by a genome-wide CRISPRi screen in mammalian cells.

Published in:

Journal of Cell Biology, 2019, v. 218, n. 11, p. 3861, doi. 10.1083/jcb.201902028

By:

Bassaganyas, Laia;
Popa, Stephanie J.;
Horlbeck, Max;
Puri, Claudia;
Stewart, Sarah E.;
Campelo, Felix;
Ashok, Anupama;
Butnaru, Cristian M.;
Brouwers, Nathalie;
Heydari, Kartoosh;
Ripoche, Jean;
Weissman, Jonathan;
Rubinsztein, David C.;
Schekman, Randy;
Malhotra, Vivek;
Moreau, Kevin;
Villeneuve, Julien

Publication type:

Article

Enclosed chambers for humidity control and sample containment in fiber diffraction.

Published in:

Journal of Applied Crystallography, 2008, v. 41, n. 1, p. 206, doi. 10.1107/S0021889807060803

By:

McDonald, Michele;
Kendall, Amy;
Tanaka, Motomasa;
Weissman, Jonathan S.;
Stubbs, Gerald

Publication type:

Article

From information to knowledge: new technologies for defining gene function.

Published in:

2009

By:

Collins, Sean R.;
Weissman, Jonathan S.;
Krogan, Nevan J.

Publication type:

Opinion

Rapid creation and quantitative monitoring of high coverage shRNA libraries.

Published in:

Nature Methods, 2009, v. 6, n. 6, p. 443, doi. 10.1038/nmeth.1330

By:

Bassik, Michael C.;
Lebbink, Robert Jan;
Churchman, L Stirling;
Ingolia, Nicholas T.;
Patena, Weronika;
LeProust, Emily M.;
Schuldiner, Maya;
Weissman, Jonathan S.;
McManus, Michael T.

Publication type:

Article

High-throughput, quantitative analyses of genetic interactions in E. coli.

Published in:

Nature Methods, 2008, v. 5, n. 9, p. 781, doi. 10.1038/nmeth.1240

By:

Typas, Athanasios;
Nichols, Robert J.;
Siegele, Deborah A.;
Shales, Michael;
Collins, Sean R.;
Lim, Bentley;
Braberg, Hannes;
Yamamoto, Natsuko;
Takeuchi, Rikiya;
Wanner, Barry L.;
Mori, Hirotada;
Weissman, Jonathan S.;
Krogan, Nevan J.;
Gross, Carol A.

Publication type:

Article

A comprehensive strategy enabling high-resolution functional analysis of the yeast genome.

Published in:

Nature Methods, 2008, v. 5, n. 8, p. 711, doi. 10.1038/nmeth.1234

By:

Breslow, David K;
Cameron, Dale M;
Collins, Sean R;
Schuldiner, Maya;
Stewart-Ornstein, Jacob;
Newman, Heather W.;
Braun, Sigurd;
Madhani, Hiten D.;
Krogan, Nevan J.;
Weissman, Jonathan S.

Publication type:

Article

High-throughput genetic interaction mapping in the fission yeast Schizosaccharomyces pombe.

Published in:

Nature Methods, 2007, v. 4, n. 10, p. 861, doi. 10.1038/nmeth1098

By:

Roguev, Assen;
Wiren, Marianna;
Weissman, Jonathan S.;
Krogan, Nevan J.

Publication type:

Article

Conformational variations in an infectious protein determine prion strain differences.

Published in:

Nature, 2004, v. 428, n. 6980, p. 323, doi. 10.1038/nature02392

By:

Tanaka, Motomasa;
Chien, Peter;
Naber, Nariman;
Cooke, Roger;
Weissman, Jonathan S.

Publication type:

Article

Global analysis of protein localization in budding yeast.

Published in:

Nature, 2003, v. 425, n. 6959, p. 686, doi. 10.1038/nature02026

By:

Huh, Won-Ki;
Falvo, James V.;
Gerke, Luke C.;
Carroll, Adam S.;
Howson, Russell W.;
Weissman, Jonathan S.;
O'Shea, Erin K.

Publication type:

Article

Global analysis of protein expression in yeast.

Published in:

Nature, 2003, v. 425, n. 6959, p. 737, doi. 10.1038/nature02046

By:

Ghaemmaghami, Sina;
Huh, Won-Ki;
Bower, Kiowa;
Howson, Russell W.;
Belle, Archana;
Dephoure, Noah;
O'Shea, Erin K.;
Weissman, Jonathan S.

Publication type:

Article

Generation of prion transmission barriers by mutational control of amyloid conformations.

Published in:

Nature, 2003, v. 424, n. 6951, p. 948, doi. 10.1038/nature01894

By:

Chien, Peter;
Depace, Angela H.;
Collins, Sean R.;
Weissman, Jonathan S.

Publication type:

Article

Conformational diversity in a yeast prion dictates its seeding specificity.

Published in:

Nature, 2001, v. 410, n. 6825, p. 223, doi. 10.1038/35065632

By:

Chien, Peter;
Weissman, Jonathan S.

Publication type:

Article

Maximizing CRISPRi efficacy and accessibility with dual- sgRNA libraries and optimal effectors.

Published in:

eLife, 2023, p. 1, doi. 10.7554/eLife.81856

By:

Replogle, Joseph M.;
Bonnar, Jessica L.;
Pogson, Angela N.;
Liem, Christina R.;
Maier, Nolan K.;
Yufang Ding;
Russell, Baylee J.;
Xingren Wang;
Kun Leng;
Guna, Alina;
Norman, Thomas M.;
Pak, Ryan A.;
Ramos, Daniel M.;
Ward, Michael E.;
Gilbert, Luke A.;
Kampmann, Martin;
Weissman, Jonathan S.;
Jost, Marco

Publication type:

Article

Translational fidelity screens in mammalian cells reveal eIF3 and eIF4G2 as regulators of start codon selectivity.

Published in:

Nucleic Acids Research, 2023, v. 51, n. 12, p. 6355, doi. 10.1093/nar/gkad329

By:

She, Richard;
Luo, Jingchuan;
Weissman, Jonathan S

Publication type:

Article

Cycloheximide can distort measurements of mRNA levels and translation efficiency.

Published in:

Nucleic Acids Research, 2019, v. 47, n. 10, p. 4974, doi. 10.1093/nar/gkz205

By:

Santos, Daniel A;
Shi, Lei;
Tu, Benjamin P;
Weissman, Jonathan S

Publication type:

Article

Ligand-binding domains of nuclear receptors facilitate tight control of split CRISPR activity.

Published in:

Nature Communications, 2016, v. 7, n. 7, p. 12009, doi. 10.1038/ncomms12009

By:

Nguyen, Duy P.;
Miyaoka, Yuichiro;
Gilbert, Luke A.;
Mayerl, Steven J.;
Lee, Brian H.;
Weissman, Jonathan S.;
Conklin, Bruce R.;
Wells, James A.

Publication type:

Article

Versatile protein tagging in cells with split fluorescent protein.

Published in:

Nature Communications, 2016, v. 7, n. 3, p. 11046, doi. 10.1038/ncomms11046

By:

Kamiyama, Daichi;
Sekine, Sayaka;
Barsi-Rhyne, Benjamin;
Hu, Jeffrey;
Chen, Baohui;
Gilbert, Luke A.;
Ishikawa, Hiroaki;
Leonetti, Manuel D.;
Marshall, Wallace F.;
Weissman, Jonathan S.;
Huang, Bo

Publication type:

Article

A high-coverage shRNA screen identifies TMEM129 as an E3 ligase involved in ER-associated protein degradation.

Published in:

Nature Communications, 2014, v. 5, n. 5, p. 3832, doi. 10.1038/ncomms4832

By:

van de Weijer, Michael L.;
Bassik, Michael C.;
Luteijn, Rutger D.;
Voorburg, Cornelia M.;
Lohuis, Mirjam A.M.;
Kremmer, Elisabeth;
Hoeben, Rob C.;
LeProust, Emily M.;
Chen, Siyuan;
Hoelen, Hanneke;
Ressing, Maaike E.;
Patena, Weronika;
Weissman, Jonathan S.;
McManus, Michael T.;
Wiertz, Emmanuel J.H.J.;
Lebbink, Robert Jan

Publication type:

Article

Unraveling the mechanism of cell death induced by chemical fibrils.

Published in:

Nature Chemical Biology, 2014, v. 10, n. 11, p. 969, doi. 10.1038/nchembio.1639

By:

Julien, Olivier;
Kampmann, Martin;
Bassik, Michael C;
Zorn, Julie A;
Venditto, Vincent J;
Shimbo, Kazutaka;
Agard, Nicholas J;
Shimada, Kenichi;
Rheingold, Arnold L;
Stockwell, Brent R;
Weissman, Jonathan S;
Wells, James A

Publication type:

Article

Differences in prion strain conformations result from non-native interactions in a nucleus.

Published in:

Nature Chemical Biology, 2010, v. 6, n. 3, p. 225, doi. 10.1038/nchembio.306

By:

Ohhashi, Yumiko;
Ito, Kazuki;
Toyama, Brandon H.;
Weissman, Jonathan S.;
Tanaka, Motomasa

Publication type:

Article

Small-molecule aggregates inhibit amyloid polymerization.

Published in:

Nature Chemical Biology, 2008, v. 4, n. 3, p. 197, doi. 10.1038/nchembio.65

By:

Feng, Brian Y;
Toyama, Brandon H;
Wille, Holger;
Colby, David W;
Collins, Sean R;
May, Barnaby C H;
Prusiner, Stanley B;
Weissman, Jonathan;
Shoichet, Brian K

Publication type:

Article

A dual sgRNA library design to probe genetic modifiers using genome-wide CRISPRi screens.

Published in:

BMC Genomics, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s12864-023-09754-y

By:

Guna, Alina;
Page, Katharine R.;
Replogle, Joseph M.;
Esantsi, Theodore K.;
Wang, Maxine L.;
Weissman, Jonathan S.;
Voorhees, Rebecca M.

Publication type:

Article

Molecular basis of infrared detection by snakes.

Published in:

Nature, 2010, v. 464, n. 7291, p. 1006, doi. 10.1038/nature08943

By:

Gracheva, Elena O.;
Ingolia, Nicholas T.;
Kelly, Yvonne M.;
Cordero-Morales, Julio F.;
Hollopeter, Gunther;
Chesler, Alexander T.;
Sánchez, Elda E.;
Perez, John C.;
Weissman, Jonathan S.;
Julius, David

Publication type:

Article

Orm family proteins mediate sphingolipid homeostasis.

Published in:

Nature, 2010, v. 463, n. 7284, p. 1048, doi. 10.1038/nature08787

By:

Breslow, David K.;
Collins, Sean R.;
Bodenmiller, Bernd;
Aebersold, Ruedi;
Simons, Kai;
Shevchenko, Andrej;
Ejsing, Christer S.;
Weissman, Jonathan S.

Publication type:

Article