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Lineage tracing of nuclei in skeletal myofibers uncovers distinct transcripts and interplay between myonuclear populations.
- Published in:
- Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-53510-z
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- Publication type:
- Article
A DNA tumor virus globally reprograms host 3D genome architecture to achieve immortal growth.
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- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37347-6
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- Publication type:
- Article
Gli3 utilizes Hand2 to synergistically regulate tissue-specific transcriptional networks.
- Published in:
- eLife, 2020, p. 1, doi. 10.7554/eLife.56450
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- Publication type:
- Article
Sox17 and β-catenin co-occupy Wnt-responsive enhancers to govern the endoderm gene regulatory network.
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- eLife, 2020, p. 1, doi. 10.7554/eLife.58029
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- Publication type:
- Article
Mapping and analysis of Caenorhabditis elegans transcription factor sequence specificities.
- Published in:
- eLife, 2015, p. 1
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- Publication type:
- Article
Transcription factor binding to Caenorhabditis elegans first introns reveals lack of redundancy with gene promoters.
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- Nucleic Acids Research, 2013, v. 41, n. 17, p. 153, doi. 10.1093/nar/gkt858
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- Publication type:
- Article
Global discovery of lupus genetic risk variant allelic enhancer activity.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21854-5
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- Publication type:
- Article
DNA methylation at the mu-1 opioid receptor gene (OPRM1) promoter predicts preoperative, acute, and chronic postsurgical pain after spine fusion.
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- Pharmacogenomics & Personalized Medicine, 2017, v. 10, p. 157, doi. 10.2147/PGPM.S132691
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- Publication type:
- Article
Affinity regression predicts the recognition code of nucleic acid-binding proteins.
- Published in:
- Nature Biotechnology, 2015, v. 33, n. 12, p. 1242, doi. 10.1038/nbt.3343
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- Publication type:
- Article
Predicting the sequence specificities of DNA- and RNA-binding proteins by deep learning.
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- Nature Biotechnology, 2015, v. 33, n. 8, p. 831, doi. 10.1038/nbt.3300
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- Publication type:
- Article
C2H2 zinc finger proteins greatly expand the human regulatory lexicon.
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- Nature Biotechnology, 2015, v. 33, n. 5, p. 555, doi. 10.1038/nbt.3128
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- Article
Evaluation of methods for modeling transcription factor sequence specificity.
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- Nature Biotechnology, 2013, v. 31, n. 2, p. 126, doi. 10.1038/nbt.2486
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- Publication type:
- Article
Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease.
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- Nature Genetics, 2014, v. 46, n. 8, p. 895, doi. 10.1038/ng.3033
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- Publication type:
- Article
Paternally Inherited DLK1 Deletion Associated With Familial Central Precocious Puberty.
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- Journal of Clinical Endocrinology & Metabolism, 2017, p. 1557, doi. 10.1210/jc.2016-3677
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- Publication type:
- Article
Paternally Inherited DLK1 Deletion Associated With Familial Central Precocious Puberty.
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- 2017
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- Publication type:
- journal article
Genomics and transcriptomics yields a system-level view of the biology of the pathogen Naegleria fowleri.
- Published in:
- BMC Biology, 2021, v. 19, n. 1, p. 1, doi. 10.1186/s12915-021-01078-1
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- Publication type:
- Article
Prostate apoptosis response protein 4 sensitizeshuman colon cancer cells to chemotherapeutic5-FU through mediation of an NFκB and microRNAnetwork.
- Published in:
- Molecular Cancer, 2010, v. 9, p. 98, doi. 10.1186/1476-4598-9-98
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- Publication type:
- Article
Degenerate Pax2 and Senseless binding motifs improve detection of low-affinity sites required for enhancer specificity.
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- PLoS Genetics, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pgen.1007289
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- Publication type:
- Article
Quantifying Inter-Laboratory Variability in Stable Isotope Analysis of Ancient Skeletal Remains.
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- PLoS ONE, 2014, v. 9, n. 7, p. 1, doi. 10.1371/journal.pone.0102844
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- Publication type:
- Article
Enhancers with cooperative Notch binding sites are more resistant to regulation by the Hairless co-repressor.
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- PLoS Genetics, 2021, v. 17, n. 9, p. 1, doi. 10.1371/journal.pgen.1009039
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- Publication type:
- Article
Runx1 shapes the chromatin landscape via a cascade of direct and indirect targets.
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- PLoS Genetics, 2021, v. 17, n. 6, p. 1, doi. 10.1371/journal.pgen.1009574
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- Publication type:
- Article
Sex- and developmental-specific transcriptomic analyses of the Antarctic mite, Alaskozetes antarcticus, reveal transcriptional shifts underlying oribatid mite reproduction.
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- Polar Biology, 2019, v. 42, n. 2, p. 357, doi. 10.1007/s00300-018-2427-x
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- Publication type:
- Article
4277 Functional consequences of the juvenile idiopathic arthritis risk variant at 1q24.3.
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- 2020
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- Publication type:
- Abstract
A functional mechanism for a non-coding variant near AGTR2 associated with risk for preterm birth.
- Published in:
- BMC Medicine, 2023, v. 21, n. 1, p. 1, doi. 10.1186/s12916-023-02973-w
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- Publication type:
- Article
Genomic analyses of a livestock pest, the New World screwworm, find potential targets for genetic control programs.
- Published in:
- Communications Biology, 2020, v. 3, n. 1, p. 1, doi. 10.1038/s42003-020-01152-4
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- Publication type:
- Article
TET1 contributes to allergic airway inflammation and regulates interferon and aryl hydrocarbon receptor signaling pathways in bronchial epithelial cells.
- Published in:
- Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-43767-6
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- Publication type:
- Article
The transcription factor Olig2 is important for the biology of diffuse intrinsic pontine gliomas.
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- Neuro-Oncology, 2017, v. 19, n. 8, p. 1068, doi. 10.1093/neuonc/now299
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- Publication type:
- Article
Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results.
- Published in:
- Nucleic Acids Research, 2005, v. 33, n. suppl 1, p. d466
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- Publication type:
- Article
VExD: a curated resource for human gene expression alterations following viral infection.
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- G3: Genes | Genomes | Genetics, 2023, v. 13, n. 10, p. 1, doi. 10.1093/g3journal/jkad176
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- Publication type:
- Article
Genetic, Inflammatory, and Epithelial Cell Differentiation Factors Control Expression of Human Calpain-14.
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- G3: Genes | Genomes | Genetics, 2019, v. 9, n. 3, p. 729, doi. 10.1534/g3.118.200901
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- Publication type:
- Article
GABPα Binding to Overlapping ETS and CRE DNA Motifs Is Enhanced by CREB1: Custom DNA Microarrays.
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- G3: Genes | Genomes | Genetics, 2015, v. 5, n. 9, p. 1909, doi. 10.1534/g3.115.020248
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- Publication type:
- Article
Divergence of transcriptional landscape occurs early in B cell activation.
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- Epigenetics & Chromatin, 2015, v. 8, n. 1, p. 1, doi. 10.1186/s13072-015-0012-x
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- Publication type:
- Article
A versatile, highly efficient, and potentially safer piggyBac transposon system for mammalian genome manipulations.
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- FASEB Journal, 2013, v. 27, n. 11, p. 4429, doi. 10.1096/fj.12-223586
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- Publication type:
- Article
Runx Transcription Factors in T Cells—What Is Beyond Thymic Development?
- Published in:
- Frontiers in Immunology, 2021, v. 12, p. 1, doi. 10.3389/fimmu.2021.701924
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- Publication type:
- Article
MiR-125a targets effector programs to stabilize Treg-mediated immune homeostasis.
- Published in:
- Nature Communications, 2015, v. 6, n. 5, p. 7096, doi. 10.1038/ncomms8096
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- Publication type:
- Article
NOMe-HiC: joint profiling of genetic variant, DNA methylation, chromatin accessibility, and 3D genome in the same DNA molecule.
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- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-02889-x
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- Publication type:
- Article
Multi-level analysis of reproduction in an Antarctic midge identifies female and male accessory gland products that are altered by larval stress and impact progeny viability.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-76139-6
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- Publication type:
- Article
The IRF5–TNPO3 association with systemic lupus erythematosus has two components that other autoimmune disorders variably share.
- Published in:
- Human Molecular Genetics, 2015, v. 24, n. 2, p. 582, doi. 10.1093/hmg/ddu455
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- Publication type:
- Article
The 253-kb inversion and deep intronic mutations in UNC13D are present in North American patients with familial hemophagocytic lymphohistiocytosis 3.
- Published in:
- Pediatric Blood & Cancer, 2014, v. 61, n. 6, p. 1034, doi. 10.1002/pbc.24955
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- Publication type:
- Article
maxATAC: Genome-scale transcription-factor binding prediction from ATAC-seq with deep neural networks.
- Published in:
- PLoS Computational Biology, 2023, v. 19, n. 1, p. 1, doi. 10.1371/journal.pcbi.1010863
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- Publication type:
- Article
A compendium of RNA-binding motifs for decoding gene regulation.
- Published in:
- Nature, 2013, v. 499, n. 7457, p. 172, doi. 10.1038/nature12311
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- Publication type:
- Article
PARP1 activation increases expression of modified tumor suppressors and pathways underlying development of aggressive hepatoblastoma.
- Published in:
- Communications Biology, 2018, v. 1, n. 1, p. N.PAG, doi. 10.1038/s42003-018-0077-8
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- Publication type:
- Article
Identification of Functional and Expression Polymorphisms Associated With Risk for Antineutrophil Cytoplasmic Autoantibody-Associated Vasculitis.
- Published in:
- Arthritis & Rheumatology, 2017, v. 69, n. 5, p. 1054, doi. 10.1002/art.40034
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- Publication type:
- Article
Second‐hand smoke and NFE2L2 genotype interaction increases paediatric asthma risk and severity.
- Published in:
- Clinical & Experimental Allergy, 2021, v. 51, n. 6, p. 801, doi. 10.1111/cea.13815
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- Publication type:
- Article
Prediction of cooperative homeodomain DNA binding sites from high-throughput-SELEX data.
- Published in:
- Nucleic Acids Research, 2023, v. 51, n. 12, p. 6055, doi. 10.1093/nar/gkad318
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- Publication type:
- Article
Defective transcription elongation in a subset of cancers confers immunotherapy resistance.
- Published in:
- Nature Communications, 2018, v. 9, p. 1, doi. 10.1038/s41467-018-06810-0
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- Publication type:
- Article
Hepatic Ago2-mediated RNA silencing controls energy metabolism linked to AMPK activation and obesity-associated pathophysiology.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-05870-6
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- Publication type:
- Article
5-Hydroxymethylcytosine in E-box motifs ACAT☋GTG and ACAC☋GTG increases DNA-binding of the B-HLH transcription factor TCF4.
- Published in:
- Integrative Biology, 2016, v. 8, n. 9, p. 936, doi. 10.1039/c6ib00079g
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- Publication type:
- Article
Non-base-contacting residues enable kaleidoscopic evolution of metazoan C2H2 zinc finger DNA binding.
- Published in:
- Genome Biology, 2017, v. 18, n. 1, p. 1, doi. 10.1186/s13059-017-1287-y
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- Publication type:
- Article
Nasal DNA methylation differentiates severe from non‐severe asthma in African‐American children.
- Published in:
- Allergy, 2021, v. 76, n. 6, p. 1836, doi. 10.1111/all.14655
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- Publication type:
- Article