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RETRACTED: Liu et al. Prediction of Ovarian Cancer Response to Therapy Based on Deep Learning Analysis of Histopathology Images. Cancers 2023, 15 , 4044.
- Published in:
- Cancers, 2024, v. 16, n. 3, p. 493, doi. 10.3390/cancers16030493
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- Publication type:
- Article
Prediction of Ovarian Cancer Response to Therapy Based on Deep Learning Analysis of Histopathology Images.
- Published in:
- Cancers, 2023, v. 15, n. 16, p. 4044, doi. 10.3390/cancers15164044
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- Publication type:
- Article
Ether phospholipids are required for mitochondrial reactive oxygen species homeostasis.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-37924-9
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- Publication type:
- Article
RPPA SPACE: an R package for normalization and quantitation of Reverse-Phase Protein Array data.
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- Bioinformatics, 2022, v. 38, n. 22, p. 5131, doi. 10.1093/bioinformatics/btac665
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- Publication type:
- Article
Compound NSC84167 selectively targets NRF2-activated pancreatic cancer by inhibiting asparagine synthesis pathway.
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- Cell Death & Disease, 2021, v. 12, n. 7, p. 1, doi. 10.1038/s41419-021-03970-8
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- Publication type:
- Article
A user guide for the online exploration and visualization of PCAWG data.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16785-6
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- Publication type:
- Article
Assessment of Luminal and Basal Phenotypes in Bladder Cancer.
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- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-66747-7
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- Publication type:
- Article
Response envelope analysis for quantitative evaluation of drug combinations.
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- Bioinformatics, 2019, v. 35, n. 19, p. 3761, doi. 10.1093/bioinformatics/btz091
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- Publication type:
- Article
ElemCor: accurate data analysis and enrichment calculation for high-resolution LC-MS stable isotope labeling experiments.
- Published in:
- BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-2669-9
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- Publication type:
- Article
Assessment of l-Asparaginase Pharmacodynamics in Mouse Models of Cancer.
- Published in:
- Metabolites (2218-1989), 2019, v. 9, n. 1, p. 10, doi. 10.3390/metabo9010010
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- Article
Global analysis of tRNA and translation factor expression reveals a dynamic landscape of translational regulation in human cancers.
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- Communications Biology, 2018, v. 1, n. 1, p. N.PAG, doi. 10.1038/s42003-018-0239-8
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- Publication type:
- Article
SoS Notebook: an interactive multi-language data analysis environment.
- Published in:
- Bioinformatics, 2018, v. 34, n. 21, p. 3768, doi. 10.1093/bioinformatics/bty405
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- Publication type:
- Article
Clinical significance of FBXO17 gene expression in high-grade glioma.
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- 2018
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- Publication type:
- journal article
Expression of human endogenous retrovirus-K is strongly associated with the basal-like breast cancer phenotype.
- Published in:
- Scientific Reports, 2017, p. 41960, doi. 10.1038/srep41960
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- Publication type:
- Article
PathwaysWeb: a gene pathways API with directional interactions, expanded gene ontology, and versioning.
- Published in:
- Bioinformatics, 2016, v. 32, n. 2, p. 312, doi. 10.1093/bioinformatics/btv554
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- Publication type:
- Article
TransVar: a multilevel variant annotator for precision genomics.
- Published in:
- Nature Methods, 2015, v. 12, n. 11, p. 1002, doi. 10.1038/nmeth.3622
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- Publication type:
- Article
Development of a robust classifier for quality control of reverse-phase protein arrays.
- Published in:
- Bioinformatics, 2015, v. 31, n. 6, p. 912, doi. 10.1093/bioinformatics/btu736
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- Publication type:
- Article
Characterization of long non-coding RNA transcriptome in clear-cell renal cell carcinoma by next-generation deep sequencing.
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- Molecular Oncology, 2015, v. 9, n. 1, p. 32, doi. 10.1016/j.molonc.2014.07.007
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- Publication type:
- Article
Genes suppressed by DNA methylation in non-small cell lung cancer reveal the epigenetics of epithelial-mesenchymal transition.
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- BMC Genomics, 2014, v. 15, n. 1, p. 591, doi. 10.1186/1471-2164-15-1079
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- Publication type:
- Article
PRADA: pipeline for RNA sequencing data analysis.
- Published in:
- Bioinformatics, 2014, v. 30, n. 15, p. 2224, doi. 10.1093/bioinformatics/btu169
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- Publication type:
- Article
THE P53 PATHWAY AND ANCESTRAL PROGENITORS ARE ASSOCIATED WITH TUMOR RECURRENCE IN GLIOBLASTOMA.
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- Neuro-Oncology, 2014, v. 16, n. suppl_3, p. iii3, doi. 10.1093/neuonc/nou206.10
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- Publication type:
- Article
Assessing the clinical utility of cancer genomic and proteomic data across tumor types.
- Published in:
- Nature Biotechnology, 2014, v. 32, n. 7, p. 644, doi. 10.1038/nbt.2940
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- Publication type:
- Article
Clinical Implications of the Cancer Genome Atlas Project on Muscle Invasive Bladder Cancer.
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- AUANews, 2014, v. 19, n. 5, p. 8
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- Publication type:
- Article
High Resolution Copy Number Variation Data in the NCI-60 Cancer Cell Lines from Whole Genome Microarrays Accessible through CellMiner.
- Published in:
- PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0092047
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- Publication type:
- Article
Cancer: Discrepancies in drug sensitivity.
- Published in:
- Nature, 2013, v. 504, n. 7480, p. 381, doi. 10.1038/nature12839
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- Publication type:
- Article
TCPA: a resource for cancer functional proteomics data.
- Published in:
- Nature Methods, 2013, v. 10, n. 11, p. 1046, doi. 10.1038/nmeth.2650
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- Publication type:
- Article
Comprehensive molecular characterization of clear cell renal cell carcinoma.
- Published in:
- Nature, 2013, v. 499, n. 7456, p. 43, doi. 10.1038/nature12222
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- Publication type:
- Article
VirusSeq: software to identify viruses and their integration sites using next-generation sequencing of human cancer tissue.
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- Bioinformatics, 2013, v. 29, n. 2, p. 266, doi. 10.1093/bioinformatics/bts665
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- Publication type:
- Article
SpliceSeq: a resource for analysis and visualization of RNA-Seq data on alternative splicing and its functional impacts.
- Published in:
- Bioinformatics, 2012, v. 28, n. 18, p. 2385, doi. 10.1093/bioinformatics/bts452
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- Publication type:
- Article
PurityEst: estimating purity of human tumor samples using next-generation sequencing data.
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- Bioinformatics, 2012, v. 28, n. 17, p. 2265
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- Publication type:
- Article
Identification of Common Prognostic Gene Expression Signatures with Biological Meanings from Microarray Gene Expression Datasets.
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- PLoS ONE, 2012, v. 7, n. 9, p. 1, doi. 10.1371/journal.pone.0045894
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- Publication type:
- Article
BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data.
- Published in:
- Bioinformatics, 2012, v. 28, n. 14, p. 1923, doi. 10.1093/bioinformatics/bts272
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- Publication type:
- Article
Concordance of Gene Expression and Functional Correlation Patterns across the NCI-60 Cell Lines and the Cancer Genome Atlas Glioblastoma Samples.
- Published in:
- PLoS ONE, 2012, v. 7, n. 7, p. 1, doi. 10.1371/journal.pone.0040062
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- Publication type:
- Article
Drug discovery: Cell lines battle cancer.
- Published in:
- Nature, 2012, v. 483, n. 7391, p. 544, doi. 10.1038/483544a
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- Publication type:
- Article
Functional Categories Associated with Clusters of Genes That Are Co-Expressed across the NCI-60 Cancer Cell Lines.
- Published in:
- PLoS ONE, 2012, v. 7, n. 1, p. 1, doi. 10.1371/journal.pone.0030317
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- Publication type:
- Article
RedundancyMiner: De-replication of redundant GO categories in microarray and proteomics analysis.
- Published in:
- BMC Bioinformatics, 2011, v. 12, n. 1, p. 52, doi. 10.1186/1471-2105-12-52
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- Publication type:
- Article
Ontogenomic study of the relationship between number of gene splice variants and GO categorization.
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- Bioinformatics, 2010, v. 26, n. 16, p. 1945, doi. 10.1093/bioinformatics/btq335
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- Publication type:
- Article
CellMiner: a relational database and query tool for the NCI-60cancer cell lines.
- Published in:
- BMC Genomics, 2009, v. 10, p. 277, doi. 10.1186/1471-2164-10-277
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- Publication type:
- Article
Comprehensive genomic characterization defines human glioblastoma genes and core pathways.
- Published in:
- Nature, 2008, v. 455, n. 7216, p. 1061, doi. 10.1038/nature07385
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- Publication type:
- Article
A stromal gene signature associated with inflammatory breast cancer.
- Published in:
- International Journal of Cancer, 2008, v. 122, n. 6, p. 1324, doi. 10.1002/ijc.23237
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- Publication type:
- Article
VennMaster: Area-proportional Euler diagrams for functional GO analysis of microarrays.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-67
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- Publication type:
- Article
SpliceCenter: A suite of web-based bioinformatic applications for evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray, and peptide-based studies.
- Published in:
- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-313
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- Publication type:
- Article
AffyProbeMiner: a web resource for computing or retrieving accurately redefined Affymetrix probe sets.
- Published in:
- Bioinformatics, 2007, v. 23, n. 18, p. 2385, doi. 10.1093/bioinformatics/btm360
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- Publication type:
- Article
Multiplexing siRNAs to compress RNAi-based screen size in human cells.
- Published in:
- Nucleic Acids Research, 2007, v. 35, n. 8, p. e57, doi. 10.1093/nar/gkm141
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- Publication type:
- Article
Connecting genes, drugs and diseases.
- Published in:
- Nature Biotechnology, 2006, v. 24, n. 11, p. 1365, doi. 10.1038/nbt1106-1365
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- Publication type:
- Article
Depicting combinatorial complexity with the molecular interaction map notation.
- Published in:
- Molecular Systems Biology, 2006, v. 2, n. 1, p. 1, doi. 10.1038/msb4100088
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- Publication type:
- Article
AbMiner: A bioinformatic resource on available monoclonal antibodies and corresponding gene identifiers for genomic, proteomic, and immunologic studies.
- Published in:
- BMC Bioinformatics, 2006, v. 7, p. 192, doi. 10.1186/1471-2105-7-192
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- Publication type:
- Article
Biomarkers in Cancer Staging, Prognosis and Treatment Selection.
- Published in:
- Nature Reviews Cancer, 2005, v. 5, n. 11, p. 845, doi. 10.1038/nrc1739
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- Publication type:
- Article
Nova regulates brain-specific splicing to shape the synapse.
- Published in:
- Nature Genetics, 2005, v. 37, n. 8, p. 844, doi. 10.1038/ng1610
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- Publication type:
- Article
Quality assessment of microarrays: Visualization of spatial artifacts and quantitation of regional biases.
- Published in:
- BMC Bioinformatics, 2005, v. 6, p. 166, doi. 10.1186/1471-2105-6-166
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- Publication type:
- Article