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Automatic text classification of drug-induced liver injury using document-term matrix and XGBoost.
- Published in:
- Frontiers in Artificial Intelligence, 2024, p. 1, doi. 10.3389/frai.2024.1401810
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- Publication type:
- Article
Measurement and Mitigation of Bias in Artificial Intelligence: A Narrative Literature Review for Regulatory Science.
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- Clinical Pharmacology & Therapeutics, 2024, v. 115, n. 4, p. 687, doi. 10.1002/cpt.3117
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- Publication type:
- Article
RxNorm for drug name normalization: a case study of prescription opioids in the FDA adverse events reporting system.
- Published in:
- Frontiers in Bioinformatics, 2024, p. 1, doi. 10.3389/fbinf.2023.1328613
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- Publication type:
- Article
A generative adversarial network model alternative to animal studies for clinical pathology assessment.
- Published in:
- Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-42933-9
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- Publication type:
- Article
PLM-ARG: antibiotic resistance gene identification using a pretrained protein language model.
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- Bioinformatics, 2023, v. 39, n. 11, p. 1, doi. 10.1093/bioinformatics/btad690
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- Publication type:
- Article
Bidirectional Encoder Representations from Transformers-like large language models in patient safety and pharmacovigilance: A comprehensive assessment of causal inference implications.
- Published in:
- Experimental Biology & Medicine, 2023, v. 248, n. 21, p. 1908, doi. 10.1177/15353702231215895
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- Publication type:
- Article
RxBERT: Enhancing drug labeling text mining and analysis with AI language modeling.
- Published in:
- Experimental Biology & Medicine, 2023, v. 248, n. 21, p. 1937, doi. 10.1177/15353702231220669
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- Publication type:
- Article
A systematic analysis and data mining of opioid-related adverse events submitted to the FAERS database.
- Published in:
- Experimental Biology & Medicine, 2023, v. 248, n. 21, p. 1944, doi. 10.1177/15353702231211860
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- Publication type:
- Article
The Quartet Data Portal: integration of community-wide resources for multiomics quality control.
- Published in:
- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-03091-9
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- Publication type:
- Article
Correcting batch effects in large-scale multiomics studies using a reference-material-based ratio method.
- Published in:
- Genome Biology, 2023, v. 24, n. 1, p. 1, doi. 10.1186/s13059-023-03047-z
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- Publication type:
- Article
Assessment of the Frequency, Phenotypes, and Outcomes of Acute Liver Injury Associated with Amoxicillin/Clavulanate in 1.4 Million Patients in the Veterans Health Administration.
- Published in:
- Drug Safety, 2023, v. 46, n. 2, p. 129, doi. 10.1007/s40264-022-01255-3
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- Publication type:
- Article
Towards accurate and reliable resolution of structural variants for clinical diagnosis.
- Published in:
- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02636-8
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- Publication type:
- Article
Author Correction: Towards accurate and reliable resolution of structural variants for clinical diagnosis.
- Published in:
- 2022
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- Publication type:
- Correction Notice
NeuroCORD: A Language Model to Facilitate COVID-19-Associated Neurological Disorder Studies.
- Published in:
- International Journal of Environmental Research & Public Health, 2022, v. 19, n. 16, p. 9974, doi. 10.3390/ijerph19169974
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- Publication type:
- Article
Best practice and reproducible science are required to advance artificial intelligence in real-world applications.
- Published in:
- Briefings in Bioinformatics, 2022, v. 23, n. 4, p. 1, doi. 10.1093/bib/bbac237
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- Publication type:
- Article
Ultra-deep multi-oncopanel sequencing of benchmarking samples with a wide range of variant allele frequencies.
- Published in:
- Scientific Data, 2022, v. 9, n. 1, p. 1, doi. 10.1038/s41597-022-01359-6
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- Publication type:
- Article
Ultra-deep sequencing data from a liquid biopsy proficiency study demonstrating analytic validity.
- Published in:
- Scientific Data, 2022, v. 9, n. 1, p. 1, doi. 10.1038/s41597-022-01276-8
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- Publication type:
- Article
Tox-GAN: An Artificial Intelligence Approach Alternative to Animal Studies—A Case Study With Toxicogenomics.
- Published in:
- Toxicological Sciences, 2022, v. 186, n. 2, p. 242, doi. 10.1093/toxsci/kfab157
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- Publication type:
- Article
Towards accurate and reliable resolution of structural variants for clinical diagnosis.
- Published in:
- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02636-8
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- Publication type:
- Article
Using synthetic chromosome controls to evaluate the sequencing of difficult regions within the human genome.
- Published in:
- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-021-02579-6
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- Publication type:
- Article
The Sequencing Quality Control 2 study: establishing community standards for sequencing in precision medicine.
- Published in:
- 2021
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- Publication type:
- Editorial
Orchestrating and sharing large multimodal data for transparent and reproducible research.
- Published in:
- Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25974-w
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- Publication type:
- Article
X-CNV: genome-wide prediction of the pathogenicity of copy number variations.
- Published in:
- Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00945-4
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- Publication type:
- Article
Informing selection of drugs for COVID-19 treatment through adverse events analysis.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-93500-5
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- Publication type:
- Article
Machine Learning for Predicting Risk of Drug-Induced Autoimmune Diseases by Structural Alerts and Daily Dose.
- Published in:
- International Journal of Environmental Research & Public Health, 2021, v. 18, n. 13, p. 7139, doi. 10.3390/ijerph18137139
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- Publication type:
- Article
Unraveling Gene Fusions for Drug Repositioning in High-Risk Neuroblastoma.
- Published in:
- Frontiers in Pharmacology, 2021, v. 11, p. N.PAG, doi. 10.3389/fphar.2021.608778
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- Publication type:
- Article
Optimized imaging methods for species-level identification of food-contaminating beetles.
- Published in:
- Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-86643-y
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- Publication type:
- Article
Identification of Translational microRNA Biomarker Candidates for Ketoconazole-Induced Liver Injury Using Next-Generation Sequencing.
- Published in:
- Toxicological Sciences, 2021, v. 179, n. 1, p. 31, doi. 10.1093/toxsci/kfaa162
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- Publication type:
- Article
FDALabel for drug repurposing studies and beyond.
- Published in:
- 2020
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- Publication type:
- Letter
Linking Pharmacogenomic Information on Drug Safety and Efficacy with Ethnic Minority Populations.
- Published in:
- Pharmaceutics, 2020, v. 12, n. 11, p. 1021, doi. 10.3390/pharmaceutics12111021
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- Publication type:
- Article
Editorial: Advancing Genomics for Rare Disease Diagnosis and Therapy Development.
- Published in:
- 2020
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- Publication type:
- Editorial
A comprehensive rat transcriptome built from large scale RNA-seq-based annotation.
- Published in:
- Nucleic Acids Research, 2020, v. 48, n. 15, p. 8320, doi. 10.1093/nar/gkaa638
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- Publication type:
- Article
Drug Repositioning for Noonan and LEOPARD Syndromes by Integrating Transcriptomics With a Structure-Based Approach.
- Published in:
- Frontiers in Pharmacology, 2020, v. 11, p. 1, doi. 10.3389/fphar.2020.00927
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- Publication type:
- Article
Cancer genomics predicts disease relapse and therapeutic response to neoadjuvant chemotherapy of hormone sensitive breast cancers.
- Published in:
- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-65055-4
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- Publication type:
- Article
Long noncoding RNA LINC00844-mediated molecular network regulates expression of drug metabolizing enzymes and nuclear receptors in human liver cells.
- Published in:
- Archives of Toxicology, 2020, v. 94, n. 5, p. 1637, doi. 10.1007/s00204-020-02706-5
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- Publication type:
- Article
DLI-IT: a deep learning approach to drug label identification through image and text embedding.
- Published in:
- 2020
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- Publication type:
- journal article
Integrating Adverse Outcome Pathways (AOPs) and High Throughput In Vitro Assays for Better Risk Evaluations, a Study with DrugInduced Liver Injury (DILI).
- Published in:
- Altex, 2020, v. 37, n. 2, p. 187, doi. 10.14573/altex.1908151
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- Publication type:
- Article
The landscape of hepatobiliary adverse reactions across 53 herbal and dietary supplements reveals immune-mediated injury as a common cause of hepatitis.
- Published in:
- Archives of Toxicology, 2020, v. 94, n. 1, p. 273, doi. 10.1007/s00204-019-02621-4
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- Publication type:
- Article
Persistent Organic Pollutants in Food: Contamination Sources, Health Effects and Detection Methods.
- Published in:
- International Journal of Environmental Research & Public Health, 2019, v. 16, n. 22, p. 4361, doi. 10.3390/ijerph16224361
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- Publication type:
- Article
Five-Feature Model for Developing the Classifier for Synergistic vs. Antagonistic Drug Combinations Built by XGBoost.
- Published in:
- Frontiers in Genetics, 2019, p. 1, doi. 10.3389/fgene.2019.00600
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- Publication type:
- Article
Sequencing XMET genes to promote genotype-guided risk assessment and precision medicine.
- Published in:
- SCIENCE CHINA Life Sciences, 2019, v. 62, n. 7, p. 895, doi. 10.1007/s11427-018-9479-5
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- Publication type:
- Article
QuaPra: Efficient transcript assembly and quantification using quadratic programming with Apriori algorithm.
- Published in:
- SCIENCE CHINA Life Sciences, 2019, v. 62, n. 7, p. 937, doi. 10.1007/s11427-018-9433-3
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- Publication type:
- Article
Correction to: Similarities and differences between variants called with human reference genome HG19 or HG38.
- Published in:
- 2019
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- Publication type:
- Correction Notice
Similarities and differences between variants called with human reference genome HG19 or HG38.
- Published in:
- BMC Bioinformatics, 2019, v. 20, p. 1, doi. 10.1186/s12859-019-2620-0
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- Publication type:
- Article
Study of serious adverse drug reactions using FDA-approved drug labeling and MedDRA.
- Published in:
- BMC Bioinformatics, 2019, v. 20, p. 1, doi. 10.1186/s12859-019-2628-5
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- Publication type:
- Article
Editorial: Integrative Toxicogenomics: Analytical Strategies to Amalgamate Exposure Effects With Genomic Sciences.
- Published in:
- 2018
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- Publication type:
- Editorial
The Development of a Database for Herbal and Dietary Supplement Induced Liver Toxicity.
- Published in:
- International Journal of Molecular Sciences, 2018, v. 19, n. 10, p. 2955, doi. 10.3390/ijms19102955
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- Publication type:
- Article
Application of genome analysis strategies in the clinical testing for pediatric diseases.
- Published in:
- Pediatric Investigation, 2018, v. 2, n. 2, p. 72, doi. 10.1002/ped4.12044
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- Publication type:
- Article
Structural Changes Due to Antagonist Binding in Ligand Binding Pocket of Androgen Receptor Elucidated Through Molecular Dynamics Simulations.
- Published in:
- Frontiers in Pharmacology, 2018, p. 1, doi. 10.3389/fphar.2018.00492
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- Publication type:
- Article
Transcriptional Responses Reveal Similarities Between Preclinical Rat Liver Testing Systems.
- Published in:
- Frontiers in Genetics, 2018, p. 1, doi. 10.3389/fgene.2018.00074
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- Publication type:
- Article