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Crossroads of assembling a moss genome: navigating contaminants and horizontal gene transfer in the moss Physcomitrellopsis africana.
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- G3: Genes | Genomes | Genetics, 2024, v. 14, n. 7, p. 1, doi. 10.1093/g3journal/jkae104
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- Article
A genome sequence for the threatened whitebark pine.
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- G3: Genes | Genomes | Genetics, 2024, v. 14, n. 5, p. 1, doi. 10.1093/g3journal/jkae061
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- Article
Unveiling the Genetic Blueprint of a Desert Scorpion: A Chromosome-level Genome of Hadrurus arizonensis Provides the First Reference for Parvorder Iurida.
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- Genome Biology & Evolution, 2024, v. 16, n. 5, p. 1, doi. 10.1093/gbe/evae097
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- Article
Profiling genome‐wide methylation in two maples: Fine‐scale approaches to detection with nanopore technology.
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- Evolutionary Applications, 2024, v. 17, n. 4, p. 1, doi. 10.1111/eva.13669
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- Article
Conserving a threatened North American walnut: a chromosome-scale reference genome for butternut (Juglans cinerea).
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- G3: Genes | Genomes | Genetics, 2024, v. 14, n. 2, p. 1, doi. 10.1093/g3journal/jkad189
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- Article
Urban living can rescue Darwin's finches from the lethal effects of invasive vampire flies.
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- Global Change Biology, 2024, v. 30, n. 1, p. 1, doi. 10.1111/gcb.17145
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- Article
Association genetics of wood traits in European black poplar (Populus nigra L.).
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- Tree Genetics & Genomes, 2023, v. 19, n. 4, p. 1, doi. 10.1007/s11295-023-01612-y
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- Article
Welcome to the big leaves: Best practices for improving genome annotation in non‐model plant genomes.
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- Applications in Plant Sciences, 2023, v. 11, n. 4, p. 1, doi. 10.1002/aps3.11533
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- Article
Multispecies comparison of host responses to Fusarium circinatum challenge in tropical pines show consistency in resistance mechanisms.
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- Plant, Cell & Environment, 2023, v. 46, n. 5, p. 1705, doi. 10.1111/pce.14522
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- Article
A long-read and short-read transcriptomics approach provides the first high-quality reference transcriptome and genome annotation for Pseudotsuga menziesii (Douglas-fir).
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- G3: Genes | Genomes | Genetics, 2023, v. 13, n. 2, p. 1, doi. 10.1093/g3journal/jkac304
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- Article
Contrasting transcriptomic patterns reveal a genomic basis for drought resilience in the relict fir Abies pinsapo Boiss.
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- Tree Physiology, 2023, v. 43, n. 2, p. 315, doi. 10.1093/treephys/tpac115
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- Article
Haplogenome assembly reveals structural variation in Eucalyptus interspecific hybrids.
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- GigaScience, 2023, v. 12, n. 1, p. 1, doi. 10.1093/gigascience/giad064
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- Article
De novo assembly of a fruit transcriptome set identifies AmMYB10 as a key regulator of anthocyanin biosynthesis in Aronia melanocarpa.
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- BMC Plant Biology, 2022, v. 22, n. 1, p. 1, doi. 10.1186/s12870-022-03518-8
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- Article
Strategies of tolerance reflected in two North American maple genomes.
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- Plant Journal, 2022, v. 109, n. 6, p. 1591, doi. 10.1111/tpj.15657
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- Article
Comparative analysis of differential gene expression indicates divergence in ontogenetic strategies of leaves in two conifer genera.
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- Ecology & Evolution (20457758), 2022, v. 12, n. 2, p. 1, doi. 10.1002/ece3.8611
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- Article
Assembled and annotated 26.5 Gbp coast redwood genome: a resource for estimating evolutionary adaptive potential and investigating hexaploid origin.
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- G3: Genes | Genomes | Genetics, 2022, v. 12, n. 1, p. 1, doi. 10.1093/g3journal/jkab380
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- Article
How to Publish at Pandemic Speed.
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- BioScience, 2021, v. 71, n. 10, p. 1001, doi. 10.1093/biosci/biab084
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- Article
Toward genomic selection in Pinus taeda: Integrating resources to support array design in a complex conifer genome.
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- Applications in Plant Sciences, 2021, v. 9, n. 6, p. 1, doi. 10.1002/aps3.11439
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- Article
Extensive Variation in Drought-Induced Gene Expression Changes Between Loblolly Pine Genotypes.
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- Frontiers in Genetics, 2021, v. 11, p. 1, doi. 10.3389/fgene.2021.661440
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- Article
Comparative genomics of six Juglans species reveals disease‐associated gene family contractions.
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- Plant Journal, 2020, v. 102, n. 2, p. 410, doi. 10.1111/tpj.14630
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- Article
EnTAP: Bringing faster and smarter functional annotation to non‐model eukaryotic transcriptomes.
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- Molecular Ecology Resources, 2020, v. 20, n. 2, p. 591, doi. 10.1111/1755-0998.13106
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- Article
Cyberinfrastructure and resources to enable an integrative approach to studying forest trees.
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- Evolutionary Applications, 2020, v. 13, n. 1, p. 228, doi. 10.1111/eva.12860
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- Article
Dual RNA-Seq Analysis of the Pine-Fusarium circinatum Interaction in Resistant (Pinus tecunumanii) and Susceptible (Pinus patula) Hosts.
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- Microorganisms, 2019, v. 7, n. 9, p. 315, doi. 10.3390/microorganisms7090315
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- Article
Cyberinfrastructure to Improve Forest Health and Productivity: The Role of Tree Databases in Connecting Genomes, Phenomes, and the Environment.
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- Frontiers in Plant Science, 2019, p. N.PAG, doi. 10.3389/fpls.2019.00813
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- Article
15 years of GDR: New data and functionality in the Genome Database for Rosaceae.
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- Nucleic Acids Research, 2019, v. 47, n. D1, p. D1137, doi. 10.1093/nar/gky1000
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- Article
Tripal MapViewer: A tool for interactive visualization and comparison of genetic maps.
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- Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz100
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- Article
Growing and cultivating the forest genomics database, TreeGenes.
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- Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz043
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- Article
Tripal v3: an ontology-based toolkit for construction of FAIR biological community databases.
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- Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz077
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- Article
Defence transcriptome assembly and pathogenesis related gene family analysis in Pinus tecunumanii (low elevation).
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- BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5015-0
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- Article
Comparative Transcriptomics Among Four White Pine Species.
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- G3: Genes | Genomes | Genetics, 2018, v. 8, n. 5, p. 1461, doi. 10.1534/g3.118.200257
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- Article
Linking phenotype, genotype and environment to unravel genetic components underlying cold hardiness in coastal Douglas-fir ( Pseudotsuga menziesii var. menziesii).
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- Tree Genetics & Genomes, 2018, v. 14, n. 1, p. 1, doi. 10.1007/s11295-017-1225-x
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- Article
Growing and cultivating the forest genomics database, TreeGenes.
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- Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay084
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- Article
Transcription through the eye of a needle: daily and annual cyclic gene expression variation in Douglas-fir needles.
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- BMC Genomics, 2017, v. 18, n. 1, p. 1, doi. 10.1186/s12864-017-3916-y
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- Article
Water availability drives signatures of local adaptation in whitebark pine ( Pinus albicaulis Engelm.) across fine spatial scales of the Lake Tahoe Basin, USA.
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- Molecular Ecology, 2017, v. 26, n. 12, p. 3168, doi. 10.1111/mec.14106
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ChloroMitoCU: Codon patterns across organelle genomes for functional genomics and evolutionary applications.
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- DNA Research, 2017, v. 24, n. 3, p. 327, doi. 10.1093/dnares/dsw044
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- Article
Transcriptomic imprints of adaptation to fresh water: parallel evolution of osmoregulatory gene expression in the Alewife.
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- Molecular Ecology, 2017, v. 26, n. 3, p. 831, doi. 10.1111/mec.13983
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- Article
An improved assembly of the loblolly pine mega-genome using long-read single-molecule sequencing.
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- GigaScience, 2017, v. 6, n. 1, p. 1, doi. 10.1093/gigascience/giw016
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- Article
Assessing the Gene Content of the Megagenome: Sugar Pine (Pinus lambertiana).
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- G3: Genes | Genomes | Genetics, 2016, v. 6, n. 12, p. 3787, doi. 10.1534/g3.116.032805
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- Article
Sequence of the Sugar Pine Megagenome.
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- Genetics, 2016, v. 204, n. 4, p. 1613, doi. 10.1534/genetics.116.193227
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- Article
Combined de novo and genome guided assembly and annotation of the Pinus patula juvenile shoot transcriptome.
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- BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2277-7
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- Article
Discovering candidate genes that regulate resin canal number in Pinus taeda stems by integrating genetic analysis across environments, ages, and populations.
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- New Phytologist, 2015, v. 205, n. 2, p. 627, doi. 10.1111/nph.13074
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- Article
Genomic Relationship Matrix for Correcting Pedigree Errors in Breeding Populations: Impact on Genetic Parameters and Genomic Selection Accuracy.
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- Crop Science, 2014, v. 54, n. 3, p. 1115, doi. 10.2135/cropsci2012.12.0673
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- Article
Sequencing and Assembly of the 22-Gb Loblolly Pine Genome.
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- Genetics, 2014, v. 196, n. 3, p. 875, doi. 10.1534/genetics.113.159715
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- Article
Unique Features of the Loblolly Pine (Pinus taeda L.) Megagenome Revealed Through Sequence Annotation.
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- Genetics, 2014, v. 196, n. 3, p. 891, doi. 10.1534/genetics.113.159996
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- Article
Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies.
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- Genome Biology, 2014, v. 15, n. 2, p. R59, doi. 10.1186/gb-2014-15-3-r59
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- Article
Mapping Fusiform Rust Resistance Genes within a Complex Mating Design of Loblolly Pine.
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- Forests (19994907), 2014, v. 5, n. 2, p. 347, doi. 10.3390/f5020347
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- Article
The Evolutionary Genetics of the Genes Underlying Phenotypic Associations for Loblolly Pine (Pinus taeda, Pinaceae).
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- Genetics, 2013, v. 195, n. 4, p. 1353, doi. 10.1534/genetics.113.157198
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- Article
Combination of multipoint maximum likelihood (MML) and regression mapping algorithms to construct a high-density genetic linkage map for loblolly pine (<i>Pinus taeda</i> L.)
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- Tree Genetics & Genomes, 2013, v. 9, n. 6, p. 1529, doi. 10.1007/s11295-013-0646-4
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- Article
Multilocus analyses reveal little evidence for lineage-wide adaptive evolution within major clades of soft pines ( Pinus subgenus Strobus).
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- Molecular Ecology, 2013, v. 22, n. 22, p. 5635, doi. 10.1111/mec.12514
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- Article
Generation, functional annotation and comparative analysis of black spruce ESTs: an important conifer genomic resource.
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- BMC Genomics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2164-14-702
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- Article