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AmplificationTimeR: an R package for timing sequential amplification events.
- Published in:
- Bioinformatics, 2024, v. 40, n. 6, p. 1, doi. 10.1093/bioinformatics/btae281
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- Publication type:
- Article
Intra-prostatic tumour evolution, steps in metastatic spread and histogenomic associations revealed by integration of multi-region whole-genome sequencing with histopathological features.
- Published in:
- Genome Medicine, 2024, v. 16, p. 1, doi. 10.1186/s13073-024-01302-x
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- Publication type:
- Article
Clonal diversification and histogenesis of malignant germ cell tumours.
- Published in:
- Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-31375-4
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- Publication type:
- Article
APOBEC3 mutational signatures are associated with extensive and diverse genomic instability across multiple tumour types.
- Published in:
- BMC Biology, 2022, v. 20, n. 1, p. 1, doi. 10.1186/s12915-022-01316-0
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- Publication type:
- Article
Tracing Lung Cancer Risk Factors Through Mutational Signatures in Never-Smokers : The Sherlock-Lung Study.
- Published in:
- American Journal of Epidemiology, 2021, v. 190, n. 6, p. 962, doi. 10.1093/aje/kwaa234
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- Publication type:
- Article
Promises and challenges of adoptive T-cell therapies for solid tumours.
- Published in:
- 2021
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- Publication type:
- journal article
Tracing Lung Cancer Risk Factors Through Mutational Signatures in Never-Smokers : The Sherlock-Lung Study.
- Published in:
- American Journal of Epidemiology, 2021, v. 190, n. 5, p. 962, doi. 10.1093/aje/kwaa234
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- Publication type:
- Article
Re-evaluating experimental validation in the Big Data Era: a conceptual argument.
- Published in:
- 2021
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- Publication type:
- Editorial
Malignant transformation and genetic alterations are uncoupled in early colorectal cancer progression.
- Published in:
- BMC Biology, 2020, v. 18, n. 1, p. N.PAG, doi. 10.1186/s12915-020-00844-x
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- Publication type:
- Article
Reference bias in the Illumina Isaac aligner.
- Published in:
- Bioinformatics, 2020, v. 36, n. 17, p. 4671, doi. 10.1093/bioinformatics/btaa514
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- Publication type:
- Article
Genetic and epigenetic intratumor heterogeneity impacts prognosis of lung adenocarcinoma.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16295-5
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- Publication type:
- Article
Profiling molecular regulators of recurrence in chemorefractory triple-negative breast cancers.
- Published in:
- 2019
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- Publication type:
- journal article
Author Correction: Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors.
- Published in:
- Nature Communications, 2019, v. 10, n. 1, p. 1, doi. 10.1038/s41467-019-08512-7
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- Publication type:
- Article
Author Correction: Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors.
- Published in:
- Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-07842-2
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- Publication type:
- Article
Time series analysis of neoadjuvant chemotherapy and bevacizumab-treated breast carcinomas reveals a systemic shift in genomic aberrations.
- Published in:
- Genome Medicine, 2018, v. 10, n. 1, p. N.PAG, doi. 10.1186/s13073-018-0601-y
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- Publication type:
- Article
Pan-cancer analysis of homozygous deletions in primary tumours uncovers rare tumour suppressors.
- Published in:
- Nature Communications, 2017, v. 8, n. 1, p. 1, doi. 10.1038/s41467-017-01355-0
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- Publication type:
- Article
Appraising the relevance of DNA copy number loss and gain in prostate cancer using whole genome DNA sequence data.
- Published in:
- PLoS Genetics, 2017, v. 13, n. 9, p. 1, doi. 10.1371/journal.pgen.1007001
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- Publication type:
- Article
Recurrent mutation of IGF signalling genes and distinct patterns of genomic rearrangement in osteosarcoma.
- Published in:
- Nature Communications, 2017, v. 8, n. 6, p. 15936, doi. 10.1038/ncomms15936
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- Publication type:
- Article
Tracing the origin of disseminated tumor cells in breast cancer using single-cell sequencing.
- Published in:
- Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-1109-7
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- Publication type:
- Article
Mutational signatures of ionizing radiation in second malignancies.
- Published in:
- Nature Communications, 2016, v. 7, n. 9, p. 12605, doi. 10.1038/ncomms12605
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- Publication type:
- Article
Concomitant inactivation of the p53- and pRB- functional pathways predicts resistance to DNA damaging drugs in breast cancer in vivo.
- Published in:
- Molecular Oncology, 2015, v. 9, n. 8, p. 1553, doi. 10.1016/j.molonc.2015.04.008
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- Publication type:
- Article
Corrigendum: Analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue.
- Published in:
- Nature Genetics, 2015, v. 47, n. 6, p. 689, doi. 10.1038/ng0615-689b
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- Publication type:
- Article
Diagnostic value of H3F3A mutations in giant cell tumour of bone compared to osteoclast‐rich mimics.
- Published in:
- Journal of Pathology: Clinical Research, 2015, v. 1, n. 2, p. 113, doi. 10.1002/cjp2.13
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- Publication type:
- Article
Tracking the origins and drivers of subclonal metastatic expansion in prostate cancer.
- Published in:
- Nature Communications, 2015, v. 6, n. 4, p. 6605, doi. 10.1038/ncomms7605
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- Publication type:
- Article
Analysis of the genetic phylogeny of multifocal prostate cancer identifies multiple independent clonal expansions in neoplastic and morphologically normal prostate tissue.
- Published in:
- Nature Genetics, 2015, v. 47, n. 4, p. 367, doi. 10.1038/ng.3221
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- Publication type:
- Article
Untargeted Metabolic Profiling Identifies Altered Serum Metabolites of Type 2 Diabetes Mellitus in a Prospective, Nested Case Control Study.
- Published in:
- Clinical Chemistry, 2015, v. 61, n. 3, p. 487, doi. 10.1373/clinchem.2014.228965
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- Publication type:
- Article
A comparison of different chemometrics approaches for the robust classification of electronic nose data.
- Published in:
- Analytical & Bioanalytical Chemistry, 2014, v. 406, n. 29, p. 7581, doi. 10.1007/s00216-014-8216-7
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- Publication type:
- Article
Genome sequencing of normal cells reveals developmental lineages and mutational processes.
- Published in:
- Nature, 2014, v. 513, n. 7518, p. 422, doi. 10.1038/nature13448
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- Publication type:
- Article
Fast randomization of large genomic datasets while preserving alteration counts.
- Published in:
- Bioinformatics, 2014, v. 30, n. 17, p. i617, doi. 10.1093/bioinformatics/btu474
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- Publication type:
- Article
Association of a germline copy number polymorphism of APOBEC3A and APOBEC3B with burden of putative APOBEC-dependent mutations in breast cancer.
- Published in:
- Nature Genetics, 2014, v. 46, n. 5, p. 487, doi. 10.1038/ng.2955
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- Publication type:
- Article
Recurrent PTPRB and PLCG1 mutations in angiosarcoma.
- Published in:
- Nature Genetics, 2014, v. 46, n. 4, p. 376, doi. 10.1038/ng.2921
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- Publication type:
- Article
Corrigendum: Distinct H3F3A and H3F3B driver mutations define chondroblastoma and giant cell tumor of bone.
- Published in:
- Nature Genetics, 2014, v. 46, n. 3, p. 316, doi. 10.1038/ng0314-316
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- Publication type:
- Article
RAG-mediated recombination is the predominant driver of oncogenic rearrangement in ETV6-RUNX1 acute lymphoblastic leukemia.
- Published in:
- Nature Genetics, 2014, v. 46, n. 2, p. 116, doi. 10.1038/ng.2874
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- Publication type:
- Article
Heterogeneity of genomic evolution and mutational profiles in multiple myeloma.
- Published in:
- Nature Communications, 2014, v. 5, n. 1, p. 2997, doi. 10.1038/ncomms3997
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- Publication type:
- Article
Distinct H3F3A and H3F3B driver mutations define chondroblastoma and giant cell tumor of bone.
- Published in:
- Nature Genetics, 2013, v. 45, n. 12, p. 1479, doi. 10.1038/ng.2814
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- Publication type:
- Article
The genetic heterogeneity and mutational burden of engineered melanomas in zebrafish models.
- Published in:
- Genome Biology, 2013, v. 14, n. 10, p. 3, doi. 10.1186/gb-2013-14-10-r113
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- Publication type:
- Article
Corrigendum: Signatures of mutational processes in human cancer.
- Published in:
- Nature, 2013, v. 502, n. 7470, p. 258, doi. 10.1038/nature12666
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- Publication type:
- Article
Signatures of mutational processes in human cancer.
- Published in:
- Nature, 2013, v. 500, n. 7463, p. 415, doi. 10.1038/nature12477
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- Publication type:
- Article
Frequent mutation of the major cartilage collagen gene COL2A1 in chondrosarcoma.
- Published in:
- Nature Genetics, 2013, v. 45, n. 8, p. 923, doi. 10.1038/ng.2668
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- Publication type:
- Article
Tandem duplication of chromosomal segments is common in ovarian and breast cancer genomes.
- Published in:
- Journal of Pathology, 2012, v. 227, n. 4, p. 446, doi. 10.1002/path.4042
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- Publication type:
- Article
The landscape of cancer genes and mutational processes in breast cancer.
- Published in:
- Nature, 2012, v. 486, n. 7403, p. 400, doi. 10.1038/nature11017
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- Publication type:
- Article
Automated workflows for accurate mass-based putative metabolite identification in LC/MS-derived metabolomic datasets.
- Published in:
- 2012
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- Publication type:
- Correction notice
Automated workflows for accurate mass-based putative metabolite identification in LC/MS-derived metabolomic datasets.
- Published in:
- Bioinformatics, 2011, v. 27, n. 8, p. 1108, doi. 10.1093/bioinformatics/btr079
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- Publication type:
- Article
Predictive models for population performance on real biological fitness landscapes.
- Published in:
- Bioinformatics, 2010, v. 26, n. 17, p. 2145, doi. 10.1093/bioinformatics/btq353
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- Publication type:
- Article
Array-based evolution of DNA aptamers allows modelling of an explicit sequence-fitness landscape.
- Published in:
- Nucleic Acids Research, 2009, v. 37, n. 1, p. e6, doi. 10.1093/nar/gkn899
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- Publication type:
- Article