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CDMAP/CDVIS: context-dependent mutation analysis package and visualization software.
- Published in:
- G3: Genes | Genomes | Genetics, 2023, v. 13, n. 4, p. 1, doi. 10.1093/g3journal/jkac299
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- Article
Unexpected Discovery of Hypermutator Phenotype Sounds the Alarm for Quality Control Strains.
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- Genome Biology & Evolution, 2021, v. 13, n. 8, p. 1, doi. 10.1093/gbe/evab148
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- Article
Low Base-Substitution Mutation Rate but High Rate of Slippage Mutations in the Sequence Repeat-Rich Genome of Dictyostelium discoideum.
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- G3: Genes | Genomes | Genetics, 2020, v. 10, n. 9, p. 1, doi. 10.1534/g3.120.401578
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- Article
An Unbiased Genome-Wide View of the Mutation Rate and Spectrum of the Endosymbiotic Bacterium Teredinibacter turnerae.
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- Genome Biology & Evolution, 2018, v. 10, n. 3, p. 723, doi. 10.1093/gbe/evy027
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- Article
Genome-Wide Biases in the Rate and Molecular Spectrum of Spontaneous Mutations in Vibrio cholerae and Vibrio fischeri.
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- Molecular Biology & Evolution, 2017, v. 34, n. 1, p. 93, doi. 10.1093/molbev/msw224
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- Article
Low Base-Substitution Mutation Rate in the Germline Genome of the Ciliate Tetrahymena thermophila.
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- Genome Biology & Evolution, 2016, v. 8, n. 12, p. 3629, doi. 10.1093/gbe/evw223
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- Article
Evolution of the Insertion-Deletion Mutation Rate Across the Tree of Life.
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- G3: Genes | Genomes | Genetics, 2016, v. 6, n. 8, p. 2583, doi. 10.1534/g3.116.030890
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- Article
The Rate and Spectrum of Spontaneous Mutations in Mycobacterium smegmatis, a Bacterium Naturally Devoid of the Postreplicative Mismatch Repair Pathway.
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- G3: Genes | Genomes | Genetics, 2016, v. 6, n. 7, p. 2157, doi. 10.1534/g3.116.030130
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- Article
The Spontaneous Mutation Rate in the Fission Yeast Schizosaccharomyces pombe.
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- Genetics, 2015, v. 201, n. 2, p. 737, doi. 10.1534/genetics.115.177329
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- Article
Background Mutational Features of the Radiation-Resistant Bacterium Deinococcus radiodurans.
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- Molecular Biology & Evolution, 2015, v. 32, n. 9, p. 2383, doi. 10.1093/molbev/msv119
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- Article
The Rate and Molecular Spectrum of Spontaneous Mutations in the GC-Rich Multichromosome Genome of Burkholderia cenocepacia.
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- Genetics, 2015, v. 200, n. 3, p. 935, doi. 10.1534/genetics.115.176834
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- Article
Asymmetric Context-Dependent Mutation Patterns Revealed through Mutation-Accumulation Experiments.
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- Molecular Biology & Evolution, 2015, v. 32, n. 7, p. 1672, doi. 10.1093/molbev/msv055
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- Article
Environmental metabarcoding reveals heterogeneous drivers of microbial eukaryote diversity in contrasting estuarine ecosystems.
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- ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 5, p. 1208, doi. 10.1038/ismej.2014.213
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- Article
Mutation Rate, Spectrum, Topology, and Context-Dependency in the DNA Mismatch Repair-Deficient Pseudomonas fluorescens ATCC948.
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- Genome Biology & Evolution, 2014, v. 7, n. 1, p. 262, doi. 10.1093/gbe/evu284
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- Article
Intra-Genomic Variation in the Ribosomal Repeats of Nematodes.
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- PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0078230
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- Article
Metagenetic community analysis of microbial eukaryotes illuminates biogeographic patterns in deep-sea and shallow water sediments.
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- Molecular Ecology, 2012, v. 21, n. 5, p. 1048, doi. 10.1111/j.1365-294X.2011.05297.x
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- Article
Ecometagenetics confirm high tropical rainforest nematode diversity.
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- Molecular Ecology, 2010, v. 19, n. 24, p. 5521, doi. 10.1111/j.1365-294X.2010.04891.x
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- Article
Simple sequence repeat variation in the Daphnia pulex genome.
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- BMC Genomics, 2010, v. 11, n. 1, p. 1, doi. 10.1186/1471-2164-11-691
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- Article
Reproducibility of read numbers in high-throughput sequencing analysis of nematode community composition and structure.
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- Molecular Ecology Resources, 2010, v. 10, n. 4, p. 666, doi. 10.1111/j.1755-0998.2009.02819.x
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- Article
Simple sequence repeat variation in the Daphnia pulex genome.
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- BMC Genomics, 2010, v. 11, p. 691, doi. 10.1186/1471-2164-11-691
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- Publication type:
- Article
Evaluating high-throughput sequencing as a method for metagenomic analysis of nematode diversity.
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- Molecular Ecology Resources, 2009, v. 9, n. 6, p. 1439, doi. 10.1111/j.1755-0998.2009.02611.x
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- Article