Works by Waszak, Sebastian M

Results: 25

A cell-based model system links chromothripsis with hyperploidy.

Published in:

Molecular Systems Biology, 2015, v. 11, n. 9, p. n/a, doi. 10.15252/msb.20156505

By:

Mardin, Balca R;
Drainas, Alexandros P;
Waszak, Sebastian M;
Weischenfeldt, Joachim;
Isokane, Mayumi;
Stütz, Adrian M;
Raeder, Benjamin;
Efthymiopoulos, Theocharis;
Buccitelli, Christopher;
Segura-Wang, Maia;
Northcott, Paul;
Pfister, Stefan M;
Lichter, Peter;
Ellenberg, Jan;
Korbel, Jan O

Publication type:

Article

A yeast one-hybrid and microfluidics-based pipeline to map mammalian gene regulatory networks.

Published in:

Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.38

By:

Gubelmann, Carine;
Waszak, Sebastian M;
Isakova, Alina;
Holcombe, Wiebke;
Hens, Korneel;
Iagovitina, Antonina;
Feuz, Jean‐Daniel;
Raghav, Sunil K;
Simicevic, Jovan;
Deplancke, Bart

Publication type:

Article

Rational combination platform trial design for children and young adults with diffuse midline glioma: A report from PNOC.

Published in:

Neuro-Oncology, 2024, v. 26, p. S125, doi. 10.1093/neuonc/noad181

By:

Mueller, Sabine;
Kline, Cassie;
Franson, Andrea;
van der Lugt, Jasper;
Prados, Michael;
Waszak, Sebastian M;
Plasschaert, Sabine L A;
Molinaro, Annette M;
Koschmann, Carl;
Nazarian, Javad

Publication type:

Article

Clinical outcome of pediatric medulloblastoma patients with Li–Fraumeni syndrome.

Published in:

Neuro-Oncology, 2023, v. 25, n. 12, p. 2273, doi. 10.1093/neuonc/noad114

By:

Kolodziejczak, Anna S;
Guerrini-Rousseau, Lea;
Planchon, Julien Masliah;
Ecker, Jonas;
Selt, Florian;
Mynarek, Martin;
Obrecht, Denise;
Sill, Martin;
Autry, Robert J;
Stutheit-Zhao, Eric;
Hirsch, Steffen;
Amouyal, Elsa;
Dufour, Christelle;
Ayrault, Olivier;
Torrejon, Jacob;
Waszak, Sebastian M;
Ramaswamy, Vijay;
Pentikainen, Virve;
Demir, Haci Ahmet;
Clifford, Steven C

Publication type:

Article

PDX models recapitulate the genetic and epigenetic landscape of pediatric T‐cell leukemia.

Published in:

EMBO Molecular Medicine, 2018, v. 10, n. 12, p. N.PAG, doi. 10.15252/emmm.201809443

By:

Richter‐Pechańska, Paulina;
Kunz, Joachim B;
Bornhauser, Beat;
Knebel Doeberitz, Caroline;
Rausch, Tobias;
Erarslan‐Uysal, Büşra;
Assenov, Yassen;
Frismantas, Viktoras;
Marovca, Blerim;
Waszak, Sebastian M;
Zimmermann, Martin;
Seemann, Julia;
Happich, Margit;
Stanulla, Martin;
Schrappe, Martin;
Cario, Gunnar;
Escherich, Gabriele;
Bakharevich, Kseniya;
Kirschner‐Schwabe, Renate;
Eckert, Cornelia

Publication type:

Article

A common microdeletion affecting a hippocampus- and amygdala-specific isoform of tryptophan hydroxylase 2 is not associated with affective disorders.

Published in:

Bipolar Disorders, 2014, v. 16, n. 7, p. 764, doi. 10.1111/bdi.12207

By:

Hammer, Christian;
Degenhardt, Franziska;
Priebe, Lutz;
Stütz, Adrian M;
Heilmann, Stefanie;
Waszak, Sebastian M;
Schlattl, Andreas;
Mangold, Elisabeth;
Hoffmann, Per;
Nöthen, Markus M;
Rietschel, Marcella;
Rappold, Gudrun;
Korbel, Jan;
Cichon, Sven;
Niesler, Beate

Publication type:

Article

Personal receptor repertoires: olfaction as a model.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 414, doi. 10.1186/1471-2164-13-414

By:

Olender, Tsviya;
Waszak, Sebastian M.;
Viavant, Maya;
Khen, Miriam;
Ben-Asher, Edna;
Reyes, Alejandro;
Nativ, Noam;
Wysocki, Charles J.;
Dongliang Ge;
Lancet, Doron

Publication type:

Article

Systematic Inference of Copy-Number Genotypes from Personal Genome Sequencing Data Reveals Extensive Olfactory Receptor Gene Content Diversity.

Published in:

PLoS Computational Biology, 2010, v. 6, n. 11, p. 1, doi. 10.1371/journal.pcbi.1000988

By:

Waszak, Sebastian M.;
Hasin, Yehudit;
Zichner, Thomas;
Olender, Tsviya;
Keydar, Ifat;
Khen, Miriam;
Stütz, Adrian M.;
Schlattl, Andreas;
Lancet, Doron;
Korbel, Jan O.

Publication type:

Article

Germline loss-of-function variant in the E3 ubiquitin ligase TRAF2 in a young adult patient with medulloblastoma: a case report.

Published in:

Acta Neuropathologica Communications, 2024, v. 12, n. 1, p. 1, doi. 10.1186/s40478-024-01896-8

By:

Vo, Josh N.;
Franson, Andrea;
Waszak, Sebastian M.;
Wu, Yi-Mi;
Becker, Nicole;
Chinnaiyan, Arul M.;
Robinson, Dan R.

Publication type:

Article

Mechanisms of imipridones in targeting mitochondrial metabolism in cancer cells.

Published in:

Neuro-Oncology, 2021, v. 23, n. 4, p. 542, doi. 10.1093/neuonc/noaa283

By:

Bonner, Erin R;
Waszak, Sebastian M;
Grotzer, Michael A;
Mueller, Sabine;
Nazarian, Javad

Publication type:

Article

Genomic and transcriptomic changes complement each other in the pathogenesis of sporadic Burkitt lymphoma.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-08578-3

By:

López, Cristina;
Kleinheinz, Kortine;
Aukema, Sietse M.;
Rohde, Marius;
Bernhart, Stephan H.;
Hübschmann, Daniel;
Wagener, Rabea;
Toprak, Umut H.;
Raimondi, Francesco;
Kreuz, Markus;
Waszak, Sebastian M.;
Huang, Zhiqin;
Sieverling, Lina;
Paramasivam, Nagarajan;
Seufert, Julian;
Sungalee, Stephanie;
Russell, Robert B.;
Bausinger, Julia;
Kretzmer, Helene;
Ammerpohl, Ole

Publication type:

Article

Somatic CpG hypermutation is associated with mismatch repair deficiency in cancer.

Published in:

Molecular Systems Biology, 2024, v. 20, n. 9, p. 1006, doi. 10.1038/s44320-024-00054-5

By:

Flynn, Aidan;
Waszak, Sebastian M;
Weischenfeldt, Joachim

Publication type:

Article

Identification and removal of low-complexity sites in allele-specific analysis of ChIP-seq data.

Published in:

Bioinformatics, 2014, v. 30, n. 2, p. 165, doi. 10.1093/bioinformatics/btt667

By:

Waszak, Sebastian M.;
Kilpinen, Helena;
Gschwind, Andreas R.;
Orioli, Andrea;
Raghav, Sunil K.;
Witwicki, Robert M.;
Migliavacca, Eugenia;
Yurovsky, Alisa;
Lappalainen, Tuuli;
Hernandez, Nouria;
Reymond, Alexandre;
Dermitzakis, Emmanouil T.;
Deplancke, Bart

Publication type:

Article

Author Correction: Butler enables rapid cloud-based analysis of thousands of human genomes.

Published in:

2023

By:

Yakneen, Sergei;
Waszak, Sebastian M.;
PCAWG Technical Working Group;
Aminou, Brice;
Bartolome, Javier;
Boroevich, Keith A.;
Boyce, Rich;
Brooks, Angela N.;
Buchanan, Alex;
Buchhalter, Ivo;
Butler, Adam P.;
Byrne, Niall J.;
Cafferkey, Andy;
Campbell, Peter J.;
Chen, Zhaohong;
Cho, Sunghoon;
Choi, Wan;
Clapham, Peter;
Davis-Dusenbery, Brandi N.;
De La Vega, Francisco M.

Publication type:

Correction Notice

Publisher Correction: Butler enables rapid cloud-based analysis of thousands of human genomes.

Published in:

2023

By:

Yakneen, Sergei;
Waszak, Sebastian M.;
PCAWG Technical Working Group;
Aminou, Brice;
Bartolome, Javier;
Boroevich, Keith A.;
Boyce, Rich;
Brooks, Angela N.;
Buchanan, Alex;
Buchhalter, Ivo;
Butler, Adam P.;
Byrne, Niall J.;
Cafferkey, Andy;
Campbell, Peter J.;
Chen, Zhaohong;
Cho, Sunghoon;
Choi, Wan;
Clapham, Peter;
Davis-Dusenbery, Brandi N.;
De La Vega, Francisco M.

Publication type:

Correction Notice

Butler enables rapid cloud-based analysis of thousands of human genomes.

Published in:

Nature Biotechnology, 2020, v. 38, n. 3, p. 288, doi. 10.1038/s41587-019-0360-3

By:

Yakneen, Sergei;
Waszak, Sebastian M.;
PCAWG Technical Working Group;
Aminou, Brice;
Bartolome, Javier;
Boroevich, Keith A.;
Boyce, Rich;
Brooks, Angela N.;
Buchanan, Alex;
Buchhalter, Ivo;
Butler, Adam P.;
Byrne, Niall J.;
Cafferkey, Andy;
Campbell, Peter J.;
Chen, Zhaohong;
Cho, Sunghoon;
Choi, Wan;
Clapham, Peter;
Davis-Dusenbery, Brandi N.;
De La Vega, Francisco M.

Publication type:

Article

Chromatin accessibility landscape of pediatric T‐lymphoblastic leukemia and human T‐cell precursors.

Published in:

EMBO Molecular Medicine, 2020, v. 12, n. 9, p. 1, doi. 10.15252/emmm.202012104

By:

Erarslan‐Uysal, Büşra;
Kunz, Joachim B;
Rausch, Tobias;
Richter‐Pechańska, Paulina;
Belzen, Ianthe AEM;
Frismantas, Viktoras;
Bornhauser, Beat;
Ordoñez‐Rueada, Diana;
Paulsen, Malte;
Benes, Vladimir;
Stanulla, Martin;
Schrappe, Martin;
Cario, Gunnar;
Escherich, Gabriele;
Bakharevich, Kseniya;
Kirschner‐Schwabe, Renate;
Eckert, Cornelia;
Loukanov, Tsvetomir;
Gorenflo, Matthias;
Waszak, Sebastian M

Publication type:

Article

Mutation-Attention (MuAt): deep representation learning of somatic mutations for tumour typing and subtyping.

Published in:

Genome Medicine, 2023, v. 15, n. 1, p. 1, doi. 10.1186/s13073-023-01204-4

By:

Sanjaya, Prima;
Maljanen, Katri;
Katainen, Riku;
Waszak, Sebastian M.;
Ambrose, J. C.;
Arumugam, P.;
Bevers, R.;
Bleda, M.;
Boardman-Pretty, F.;
Boustred, C. R.;
Brittain, H.;
Brown, M. A.;
Caulfield, M. J.;
Chan, G. C.;
Giess, A.;
Griffin, J. N.;
Hamblin, A.;
Henderson, S.;
Hubbard, T. J. P.;
Jackson, R.

Publication type:

Article

Genomic Variation and Its Impact on Gene Expression in Drosophila melanogaster.

Published in:

PLoS Genetics, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pgen.1003055

By:

Massouras, Andreas;
Waszak, Sebastian M.;
Albarca-Aguilera, Monica;
Hens, Korneel;
Holcombe, Wiebke;
Ayroles, Julien F.;
Dermitzakis, Emmanouil T.;
Stone, Eric A.;
Jensen, Jeffrey D.;
Mackay, Trudy F. C.;
Deplancke, Bart

Publication type:

Article

Pan-cancer atlas of somatic core and linker histone mutations.

Published in:

NPJ Genomic Medicine, 2023, v. 8, n. 1, p. 1, doi. 10.1038/s41525-023-00367-8

By:

Bonner, Erin R.;
Dawood, Adam;
Gordish-Dressman, Heather;
Eze, Augustine;
Bhattacharya, Surajit;
Yadavilli, Sridevi;
Mueller, Sabine;
Waszak, Sebastian M.;
Nazarian, Javad

Publication type:

Article

Pan-cancer atlas of somatic core and linker histone mutations.

Published in:

NPJ Genomic Medicine, 2023, v. 8, n. 1, p. 1, doi. 10.1038/s41525-023-00367-8

By:

Bonner, Erin R.;
Dawood, Adam;
Gordish-Dressman, Heather;
Eze, Augustine;
Bhattacharya, Surajit;
Yadavilli, Sridevi;
Mueller, Sabine;
Waszak, Sebastian M.;
Nazarian, Javad

Publication type:

Article

Reply to Li and Colleagues.

Published in:

JNCI: Journal of the National Cancer Institute, 2023, v. 115, n. 6, p. 760, doi. 10.1093/jnci/djad057

By:

Kratz, Christian P;
Smirnov, Dmitrii;
Autry, Robert;
Jäger, Natalie;
Waszak, Sebastian M;
Großhennig, Anika;
Berutti, Riccardo;
Wendorff, Mareike;
Hainaut, Pierre;
Pfister, Stefan M;
Prokisch, Holger;
Ripperger, Tim;
Malkin, David

Publication type:

Article

Reply to Evans and Woodward.

Published in:

JNCI: Journal of the National Cancer Institute, 2023, v. 115, n. 2, p. 231, doi. 10.1093/jnci/djac224

By:

Kratz, Christian P;
Smirnov, Dmitrii;
Autry, Robert;
Jäger, Natalie;
Waszak, Sebastian M;
Großhennig, Anika;
Berutti, Riccardo;
Wendorff, Mareike;
Hainaut, Pierre;
Pfister, Stefan M;
Prokisch, Holger;
Ripperger, Tim;
Malkin, David

Publication type:

Article

Heterozygous BRCA1 and BRCA2 and Mismatch Repair Gene Pathogenic Variants in Children and Adolescents With Cancer.

Published in:

JNCI: Journal of the National Cancer Institute, 2022, v. 114, n. 11, p. 1523, doi. 10.1093/jnci/djac151

By:

Kratz, Christian P;
Smirnov, Dmitrii;
Autry, Robert;
Jäger, Natalie;
Waszak, Sebastian M;
Großhennig, Anika;
Berutti, Riccardo;
Wendorff, Mareike;
Hainaut, Pierre;
Pfister, Stefan M;
Prokisch, Holger;
Ripperger, Tim;
Malkin, David

Publication type:

Article

A leukemia-protective germline variant mediates chromatin module formation via transcription factor nucleation.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29625-6

By:

Llimos, Gerard;
Gardeux, Vincent;
Koch, Ute;
Kribelbauer, Judith F.;
Hafner, Antonina;
Alpern, Daniel;
Pezoldt, Joern;
Litovchenko, Maria;
Russeil, Julie;
Dainese, Riccardo;
Moia, Riccardo;
Mahmoud, Abdurraouf Mokhtar;
Rossi, Davide;
Gaidano, Gianluca;
Plass, Christoph;
Lutsik, Pavlo;
Gerhauser, Clarissa;
Waszak, Sebastian M.;
Boettiger, Alistair;
Radtke, Freddy

Publication type:

Article