Found: 26

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  • Somatic CpG hypermutation is associated with mismatch repair deficiency in cancer.

    Published in:
    Molecular Systems Biology, 2024, v. 20, n. 9, p. 1006, doi. 10.1038/s44320-024-00054-5
    By:
    • Flynn, Aidan;
    • Waszak, Sebastian M;
    • Weischenfeldt, Joachim
    Publication type:
    Article

  • Personal receptor repertoires: olfaction as a model.

    Published in:
    BMC Genomics, 2012, v. 13, n. 1, p. 414, doi. 10.1186/1471-2164-13-414
    By:
    • Olender, Tsviya;
    • Waszak, Sebastian M.;
    • Viavant, Maya;
    • Khen, Miriam;
    • Ben-Asher, Edna;
    • Reyes, Alejandro;
    • Nativ, Noam;
    • Wysocki, Charles J.;
    • Dongliang Ge;
    • Lancet, Doron
    Publication type:
    Article

  • Chromatin accessibility landscape of pediatric T‐lymphoblastic leukemia and human T‐cell precursors.

    Published in:
    EMBO Molecular Medicine, 2020, v. 12, n. 9, p. 1, doi. 10.15252/emmm.202012104
    By:
    • Erarslan‐Uysal, Büşra;
    • Kunz, Joachim B;
    • Rausch, Tobias;
    • Richter‐Pechańska, Paulina;
    • Belzen, Ianthe AEM;
    • Frismantas, Viktoras;
    • Bornhauser, Beat;
    • Ordoñez‐Rueada, Diana;
    • Paulsen, Malte;
    • Benes, Vladimir;
    • Stanulla, Martin;
    • Schrappe, Martin;
    • Cario, Gunnar;
    • Escherich, Gabriele;
    • Bakharevich, Kseniya;
    • Kirschner‐Schwabe, Renate;
    • Eckert, Cornelia;
    • Loukanov, Tsvetomir;
    • Gorenflo, Matthias;
    • Waszak, Sebastian M
    Publication type:
    Article

  • PDX models recapitulate the genetic and epigenetic landscape of pediatric T‐cell leukemia.

    Published in:
    EMBO Molecular Medicine, 2018, v. 10, n. 12, p. N.PAG, doi. 10.15252/emmm.201809443
    By:
    • Richter‐Pechańska, Paulina;
    • Kunz, Joachim B;
    • Bornhauser, Beat;
    • Knebel Doeberitz, Caroline;
    • Rausch, Tobias;
    • Erarslan‐Uysal, Büşra;
    • Assenov, Yassen;
    • Frismantas, Viktoras;
    • Marovca, Blerim;
    • Waszak, Sebastian M;
    • Zimmermann, Martin;
    • Seemann, Julia;
    • Happich, Margit;
    • Stanulla, Martin;
    • Schrappe, Martin;
    • Cario, Gunnar;
    • Escherich, Gabriele;
    • Bakharevich, Kseniya;
    • Kirschner‐Schwabe, Renate;
    • Eckert, Cornelia
    Publication type:
    Article

  • Mutation-Attention (MuAt): deep representation learning of somatic mutations for tumour typing and subtyping.

    Published in:
    Genome Medicine, 2023, v. 15, n. 1, p. 1, doi. 10.1186/s13073-023-01204-4
    By:
    • Sanjaya, Prima;
    • Maljanen, Katri;
    • Katainen, Riku;
    • Waszak, Sebastian M.;
    • Ambrose, J. C.;
    • Arumugam, P.;
    • Bevers, R.;
    • Bleda, M.;
    • Boardman-Pretty, F.;
    • Boustred, C. R.;
    • Brittain, H.;
    • Brown, M. A.;
    • Caulfield, M. J.;
    • Chan, G. C.;
    • Giess, A.;
    • Griffin, J. N.;
    • Hamblin, A.;
    • Henderson, S.;
    • Hubbard, T. J. P.;
    • Jackson, R.
    Publication type:
    Article

  • Genomic Variation and Its Impact on Gene Expression in Drosophila melanogaster.

    Published in:
    PLoS Genetics, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pgen.1003055
    By:
    • Massouras, Andreas;
    • Waszak, Sebastian M.;
    • Albarca-Aguilera, Monica;
    • Hens, Korneel;
    • Holcombe, Wiebke;
    • Ayroles, Julien F.;
    • Dermitzakis, Emmanouil T.;
    • Stone, Eric A.;
    • Jensen, Jeffrey D.;
    • Mackay, Trudy F. C.;
    • Deplancke, Bart
    Publication type:
    Article

  • Reply to Li and Colleagues.

    Published in:
    JNCI: Journal of the National Cancer Institute, 2023, v. 115, n. 6, p. 760, doi. 10.1093/jnci/djad057
    By:
    • Kratz, Christian P;
    • Smirnov, Dmitrii;
    • Autry, Robert;
    • Jäger, Natalie;
    • Waszak, Sebastian M;
    • Großhennig, Anika;
    • Berutti, Riccardo;
    • Wendorff, Mareike;
    • Hainaut, Pierre;
    • Pfister, Stefan M;
    • Prokisch, Holger;
    • Ripperger, Tim;
    • Malkin, David
    Publication type:
    Article

  • Reply to Evans and Woodward.

    Published in:
    JNCI: Journal of the National Cancer Institute, 2023, v. 115, n. 2, p. 231, doi. 10.1093/jnci/djac224
    By:
    • Kratz, Christian P;
    • Smirnov, Dmitrii;
    • Autry, Robert;
    • Jäger, Natalie;
    • Waszak, Sebastian M;
    • Großhennig, Anika;
    • Berutti, Riccardo;
    • Wendorff, Mareike;
    • Hainaut, Pierre;
    • Pfister, Stefan M;
    • Prokisch, Holger;
    • Ripperger, Tim;
    • Malkin, David
    Publication type:
    Article

  • Heterozygous BRCA1 and BRCA2 and Mismatch Repair Gene Pathogenic Variants in Children and Adolescents With Cancer.

    Published in:
    JNCI: Journal of the National Cancer Institute, 2022, v. 114, n. 11, p. 1523, doi. 10.1093/jnci/djac151
    By:
    • Kratz, Christian P;
    • Smirnov, Dmitrii;
    • Autry, Robert;
    • Jäger, Natalie;
    • Waszak, Sebastian M;
    • Großhennig, Anika;
    • Berutti, Riccardo;
    • Wendorff, Mareike;
    • Hainaut, Pierre;
    • Pfister, Stefan M;
    • Prokisch, Holger;
    • Ripperger, Tim;
    • Malkin, David
    Publication type:
    Article

  • Genomic and transcriptomic changes complement each other in the pathogenesis of sporadic Burkitt lymphoma.

    Published in:
    Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-08578-3
    By:
    • López, Cristina;
    • Kleinheinz, Kortine;
    • Aukema, Sietse M.;
    • Rohde, Marius;
    • Bernhart, Stephan H.;
    • Hübschmann, Daniel;
    • Wagener, Rabea;
    • Toprak, Umut H.;
    • Raimondi, Francesco;
    • Kreuz, Markus;
    • Waszak, Sebastian M.;
    • Huang, Zhiqin;
    • Sieverling, Lina;
    • Paramasivam, Nagarajan;
    • Seufert, Julian;
    • Sungalee, Stephanie;
    • Russell, Robert B.;
    • Bausinger, Julia;
    • Kretzmer, Helene;
    • Ammerpohl, Ole
    Publication type:
    Article

  • Systematic Inference of Copy-Number Genotypes from Personal Genome Sequencing Data Reveals Extensive Olfactory Receptor Gene Content Diversity.

    Published in:
    PLoS Computational Biology, 2010, v. 6, n. 11, p. 1, doi. 10.1371/journal.pcbi.1000988
    By:
    • Waszak, Sebastian M.;
    • Hasin, Yehudit;
    • Zichner, Thomas;
    • Olender, Tsviya;
    • Keydar, Ifat;
    • Khen, Miriam;
    • Stütz, Adrian M.;
    • Schlattl, Andreas;
    • Lancet, Doron;
    • Korbel, Jan O.
    Publication type:
    Article

  • No correlation between NF1 mutation position and risk of optic pathway glioma in 77 unrelated NF1 patients.

    Published in:
    Human Genetics, 2016, v. 135, n. 5, p. 469, doi. 10.1007/s00439-016-1646-x
    By:
    • Hutter, Sonja;
    • Piro, Rosario;
    • Waszak, Sebastian;
    • Kehrer-Sawatzki, Hildegard;
    • Friedrich, Reinhard;
    • Lassaletta, Alvaro;
    • Witt, Olaf;
    • Korbel, Jan;
    • Lichter, Peter;
    • Schuhmann, Martin;
    • Pfister, Stefan;
    • Tabori, Uri;
    • Mautner, Victor;
    • Jones, David
    Publication type:
    Article

  • A leukemia-protective germline variant mediates chromatin module formation via transcription factor nucleation.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29625-6
    By:
    • Llimos, Gerard;
    • Gardeux, Vincent;
    • Koch, Ute;
    • Kribelbauer, Judith F.;
    • Hafner, Antonina;
    • Alpern, Daniel;
    • Pezoldt, Joern;
    • Litovchenko, Maria;
    • Russeil, Julie;
    • Dainese, Riccardo;
    • Moia, Riccardo;
    • Mahmoud, Abdurraouf Mokhtar;
    • Rossi, Davide;
    • Gaidano, Gianluca;
    • Plass, Christoph;
    • Lutsik, Pavlo;
    • Gerhauser, Clarissa;
    • Waszak, Sebastian M.;
    • Boettiger, Alistair;
    • Radtke, Freddy
    Publication type:
    Article

  • Pan-cancer atlas of somatic core and linker histone mutations.

    Published in:
    NPJ Genomic Medicine, 2023, v. 8, n. 1, p. 1, doi. 10.1038/s41525-023-00367-8
    By:
    • Bonner, Erin R.;
    • Dawood, Adam;
    • Gordish-Dressman, Heather;
    • Eze, Augustine;
    • Bhattacharya, Surajit;
    • Yadavilli, Sridevi;
    • Mueller, Sabine;
    • Waszak, Sebastian M.;
    • Nazarian, Javad
    Publication type:
    Article

  • Pan-cancer atlas of somatic core and linker histone mutations.

    Published in:
    NPJ Genomic Medicine, 2023, v. 8, n. 1, p. 1, doi. 10.1038/s41525-023-00367-8
    By:
    • Bonner, Erin R.;
    • Dawood, Adam;
    • Gordish-Dressman, Heather;
    • Eze, Augustine;
    • Bhattacharya, Surajit;
    • Yadavilli, Sridevi;
    • Mueller, Sabine;
    • Waszak, Sebastian M.;
    • Nazarian, Javad
    Publication type:
    Article

  • Identification and removal of low-complexity sites in allele-specific analysis of ChIP-seq data.

    Published in:
    Bioinformatics, 2014, v. 30, n. 2, p. 165, doi. 10.1093/bioinformatics/btt667
    By:
    • Waszak, Sebastian M.;
    • Kilpinen, Helena;
    • Gschwind, Andreas R.;
    • Orioli, Andrea;
    • Raghav, Sunil K.;
    • Witwicki, Robert M.;
    • Migliavacca, Eugenia;
    • Yurovsky, Alisa;
    • Lappalainen, Tuuli;
    • Hernandez, Nouria;
    • Reymond, Alexandre;
    • Dermitzakis, Emmanouil T.;
    • Deplancke, Bart
    Publication type:
    Article

  • Author Correction: Butler enables rapid cloud-based analysis of thousands of human genomes.

    Published in:
    2023
    By:
    • Yakneen, Sergei;
    • Waszak, Sebastian M.;
    • PCAWG Technical Working Group;
    • Aminou, Brice;
    • Bartolome, Javier;
    • Boroevich, Keith A.;
    • Boyce, Rich;
    • Brooks, Angela N.;
    • Buchanan, Alex;
    • Buchhalter, Ivo;
    • Butler, Adam P.;
    • Byrne, Niall J.;
    • Cafferkey, Andy;
    • Campbell, Peter J.;
    • Chen, Zhaohong;
    • Cho, Sunghoon;
    • Choi, Wan;
    • Clapham, Peter;
    • Davis-Dusenbery, Brandi N.;
    • De La Vega, Francisco M.
    Publication type:
    Correction Notice

  • Publisher Correction: Butler enables rapid cloud-based analysis of thousands of human genomes.

    Published in:
    2023
    By:
    • Yakneen, Sergei;
    • Waszak, Sebastian M.;
    • PCAWG Technical Working Group;
    • Aminou, Brice;
    • Bartolome, Javier;
    • Boroevich, Keith A.;
    • Boyce, Rich;
    • Brooks, Angela N.;
    • Buchanan, Alex;
    • Buchhalter, Ivo;
    • Butler, Adam P.;
    • Byrne, Niall J.;
    • Cafferkey, Andy;
    • Campbell, Peter J.;
    • Chen, Zhaohong;
    • Cho, Sunghoon;
    • Choi, Wan;
    • Clapham, Peter;
    • Davis-Dusenbery, Brandi N.;
    • De La Vega, Francisco M.
    Publication type:
    Correction Notice

  • Butler enables rapid cloud-based analysis of thousands of human genomes.

    Published in:
    Nature Biotechnology, 2020, v. 38, n. 3, p. 288, doi. 10.1038/s41587-019-0360-3
    By:
    • Yakneen, Sergei;
    • Waszak, Sebastian M.;
    • PCAWG Technical Working Group;
    • Aminou, Brice;
    • Bartolome, Javier;
    • Boroevich, Keith A.;
    • Boyce, Rich;
    • Brooks, Angela N.;
    • Buchanan, Alex;
    • Buchhalter, Ivo;
    • Butler, Adam P.;
    • Byrne, Niall J.;
    • Cafferkey, Andy;
    • Campbell, Peter J.;
    • Chen, Zhaohong;
    • Cho, Sunghoon;
    • Choi, Wan;
    • Clapham, Peter;
    • Davis-Dusenbery, Brandi N.;
    • De La Vega, Francisco M.
    Publication type:
    Article

  • Rational combination platform trial design for children and young adults with diffuse midline glioma: A report from PNOC.

    Published in:
    Neuro-Oncology, 2024, v. 26, p. S125, doi. 10.1093/neuonc/noad181
    By:
    • Mueller, Sabine;
    • Kline, Cassie;
    • Franson, Andrea;
    • van der Lugt, Jasper;
    • Prados, Michael;
    • Waszak, Sebastian M;
    • Plasschaert, Sabine L A;
    • Molinaro, Annette M;
    • Koschmann, Carl;
    • Nazarian, Javad
    Publication type:
    Article

  • Clinical outcome of pediatric medulloblastoma patients with Li–Fraumeni syndrome.

    Published in:
    Neuro-Oncology, 2023, v. 25, n. 12, p. 2273, doi. 10.1093/neuonc/noad114
    By:
    • Kolodziejczak, Anna S;
    • Guerrini-Rousseau, Lea;
    • Planchon, Julien Masliah;
    • Ecker, Jonas;
    • Selt, Florian;
    • Mynarek, Martin;
    • Obrecht, Denise;
    • Sill, Martin;
    • Autry, Robert J;
    • Stutheit-Zhao, Eric;
    • Hirsch, Steffen;
    • Amouyal, Elsa;
    • Dufour, Christelle;
    • Ayrault, Olivier;
    • Torrejon, Jacob;
    • Waszak, Sebastian M;
    • Ramaswamy, Vijay;
    • Pentikainen, Virve;
    • Demir, Haci Ahmet;
    • Clifford, Steven C
    Publication type:
    Article

  • Mechanisms of imipridones in targeting mitochondrial metabolism in cancer cells.

    Published in:
    Neuro-Oncology, 2021, v. 23, n. 4, p. 542, doi. 10.1093/neuonc/noaa283
    By:
    • Bonner, Erin R;
    • Waszak, Sebastian M;
    • Grotzer, Michael A;
    • Mueller, Sabine;
    • Nazarian, Javad
    Publication type:
    Article

  • MEDU-11. MOLECULAR CHARACTERIZATION OF ETMRs REVEALS A ROLE FOR R-LOOP MEDIATED CHROMOSOMAL INSTABILITY.

    Published in:
    Neuro-Oncology, 2019, v. 21, p. ii105, doi. 10.1093/neuonc/noz036.170
    By:
    • Lambo, Sander;
    • Gröbner, Susanne;
    • Rausch, Tobias;
    • Waszak, Sebastian;
    • Schmidt, Christin;
    • Gorthi, Aparna;
    • Romero, Carolina;
    • Mauermann, Monika;
    • Brabetz, Sebastian;
    • Krausert, Sonja;
    • Uro-Coste, Emmanuelle;
    • Bourdeaut, Franck;
    • Huang, Annie;
    • Bishop, Alexander;
    • Pfister, Stefan;
    • Korshunov, Andrey;
    • Kool, Marcel
    Publication type:
    Article

  • A common microdeletion affecting a hippocampus- and amygdala-specific isoform of tryptophan hydroxylase 2 is not associated with affective disorders.

    Published in:
    Bipolar Disorders, 2014, v. 16, n. 7, p. 764, doi. 10.1111/bdi.12207
    By:
    • Hammer, Christian;
    • Degenhardt, Franziska;
    • Priebe, Lutz;
    • Stütz, Adrian M;
    • Heilmann, Stefanie;
    • Waszak, Sebastian M;
    • Schlattl, Andreas;
    • Mangold, Elisabeth;
    • Hoffmann, Per;
    • Nöthen, Markus M;
    • Rietschel, Marcella;
    • Rappold, Gudrun;
    • Korbel, Jan;
    • Cichon, Sven;
    • Niesler, Beate
    Publication type:
    Article

  • A cell-based model system links chromothripsis with hyperploidy.

    Published in:
    Molecular Systems Biology, 2015, v. 11, n. 9, p. n/a, doi. 10.15252/msb.20156505
    By:
    • Mardin, Balca R;
    • Drainas, Alexandros P;
    • Waszak, Sebastian M;
    • Weischenfeldt, Joachim;
    • Isokane, Mayumi;
    • Stütz, Adrian M;
    • Raeder, Benjamin;
    • Efthymiopoulos, Theocharis;
    • Buccitelli, Christopher;
    • Segura-Wang, Maia;
    • Northcott, Paul;
    • Pfister, Stefan M;
    • Lichter, Peter;
    • Ellenberg, Jan;
    • Korbel, Jan O
    Publication type:
    Article

  • A yeast one-hybrid and microfluidics-based pipeline to map mammalian gene regulatory networks.

    Published in:
    Molecular Systems Biology, 2013, v. 9, n. 1, p. 1, doi. 10.1038/msb.2013.38
    By:
    • Gubelmann, Carine;
    • Waszak, Sebastian M;
    • Isakova, Alina;
    • Holcombe, Wiebke;
    • Hens, Korneel;
    • Iagovitina, Antonina;
    • Feuz, Jean‐Daniel;
    • Raghav, Sunil K;
    • Simicevic, Jovan;
    • Deplancke, Bart
    Publication type:
    Article