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Inferring gender from first names: Comparing the accuracy of Genderize, Gender API, and the gender R package on authors of diverse nationality.
Published in:
PLoS Digital Health, 2024, v. 3, n. 10, p. 1, doi. 10.1371/journal.pdig.0000456
By:
- VanHelene, Alexander D.;
- Khatri, Ishaani;
- Hilton, C. Beau;
- Mishra, Sanjay;
- Gamsiz Uzun, Ece D.;
- Warner, Jeremy L.
Publication type:
Article
Oral antivirals for COVID-19 among patients with cancer.
Published in:
Supportive Care in Cancer, 2024, v. 32, n. 8, p. 1, doi. 10.1007/s00520-024-08714-w
By:
- Guermazi, Dorra;
- Arvanitis, Panos;
- Vieira, Kendra;
- Warner, Jeremy L.;
- Farmakiotis, Dimitrios
Publication type:
Article
Normalization of drug and therapeutic concepts with Thera-Py.
Published in:
JAMIA Open, 2023, v. 6, n. 4, p. 1, doi. 10.1093/jamiaopen/ooad093
By:
- Cannon, Matthew;
- Stevenson, James;
- Kuzma, Kori;
- Kiwala, Susanna;
- Warner, Jeremy L;
- Griffith, Obi L;
- Griffith, Malachi;
- Wagner, Alex H
Publication type:
Article
Open notes sounds great, but will a provider's documentation change? An exploratory study of the effect of open notes on oncology documentation.
Published in:
JAMIA Open, 2021, v. 4, n. 3, p. 1, doi. 10.1093/jamiaopen/ooab051
By:
- Rahimian, Maryam;
- Warner, Jeremy L.;
- Salmi, Liz;
- Rosenbloom, S. Trent;
- Davis, Roger B.;
- Joyce, Robin M.
Publication type:
Article
Classification and analysis of asynchronous communication content between care team members involved in breast cancer treatment.
Published in:
JAMIA Open, 2021, v. 4, n. 3, p. 1, doi. 10.1093/jamiaopen/ooab049
By:
- Steitz, Bryan D.;
- Sulieman, Lina;
- Warner, Jeremy L.;
- Fabbri, Daniel;
- Brown, J. Thomas;
- Davis, Alyssa L.;
- Unertl, Kim M.
Publication type:
Article
Frontal and anterior temporal hypometabolism post chemoradiation in head and neck cancer: A real‐world PET study.
Published in:
Journal of Neuroimaging, 2024, v. 34, n. 2, p. 211, doi. 10.1111/jon.13181
By:
- Bishay, Steven;
- Robb, W. Hudson;
- Schwartz, Trent M.;
- Smith, David S.;
- Lee, Lok Hin;
- Lynn, Cynthia J.;
- Clark, Tammy L.;
- Jefferson, Angela L.;
- Warner, Jeremy L.;
- Rosenthal, Eben L.;
- Murphy, Barbara A.;
- Hohman, Timothy J.;
- Koran, Mary Ellen I.
Publication type:
Article
Genomic analysis of early-stage lung cancer reveals a role for TP53 mutations in distant metastasis.
Published in:
Scientific Reports, 2022, v. 12, n. 1, p. 1, doi. 10.1038/s41598-022-21448-1
By:
- Van Egeren, Debra;
- Kohli, Khushi;
- Warner, Jeremy L.;
- Bedard, Philippe L.;
- Riely, Gregory;
- Lepisto, Eva;
- Schrag, Deborah;
- LeNoue-Newton, Michele;
- Catalano, Paul;
- Kehl, Kenneth L.;
- Michor, Franziska;
- for the AACR Project GENIE Consortium represented by Shawn Sweeney;
- Fiandalo, Michael;
- Foti, Margaret;
- Khotskaya, Yekaterina;
- Lee, Jocelyn;
- Peters, Nicole;
- Sweeney, Shawn;
- Abraham, Jean;
- Brenton, James D.
Publication type:
Article
Current and Emerging Informatics Initiatives Impactful to Cancer Registries.
Published in:
Journal of Registry Management, 2022, v. 49, n. 4, p. 153
By:
- Rollison, Dana E.;
- Levin, Gary M.;
- Warner, Jeremy L.;
- Pinder, Rich;
- Havener, Lori A.;
- Behera, Madhusmita;
- Post, Andrew R.;
- Gopalakrishnan, Rajan;
- Durbin, Eric B.
Publication type:
Article
Cancer Therapy Approval Timings, Review Speed, and Publication of Pivotal Registration Trials in the US and Europe, 2010-2019.
Published in:
JAMA Network Open, 2022, v. 5, n. 6, p. e2216183, doi. 10.1001/jamanetworkopen.2022.16183
By:
- Lythgoe, Mark P.;
- Desai, Aakash;
- Gyawali, Bishal;
- Savage, Philip;
- Krell, Jonathan;
- Warner, Jeremy L.;
- Khaki, Ali Raza
Publication type:
Article
Evaluation of Information Theoretic Network Meta-analysis to Rank First-Line Anticancer Regimens for Hormone Receptor–Positive, ERBB2-Negative Metastatic Breast Cancer.
Published in:
JAMA Network Open, 2022, v. 5, n. 1, p. e224361, doi. 10.1001/jamanetworkopen.2022.4361
By:
- Li, Xuanyi;
- Beeghly-Fadiel, Alicia;
- Bhavnani, Suresh K.;
- Tavana, Hossein;
- Rubinstein, Samuel M.;
- Gyawali, Bishal;
- Riaz, Irbaz Bin;
- Fernandes, H. Deepika;
- Warner, Jeremy L.
Publication type:
Article
Racial Disparities in COVID-19 Outcomes Among Black and White Patients With Cancer.
Published in:
JAMA Network Open, 2022, v. 5, n. 3, p. e224304, doi. 10.1001/jamanetworkopen.2022.4304
By:
- Fu, Julie;
- Reid, Sonya A.;
- French, Benjamin;
- Hennessy, Cassandra;
- Hwang, Clara;
- Gatson, Na Tosha;
- Duma, Narjust;
- Mishra, Sanjay;
- Nguyen, Ryan;
- Hawley, Jessica E.;
- Singh, Sunny R. K.;
- Chism, David D.;
- Venepalli, Neeta K.;
- Warner, Jeremy L.;
- Choueiri, Toni K.;
- Schmidt, Andrew L.;
- Fecher, Leslie A.;
- Girard, Jennifer E.;
- Bilen, Mehmet A.;
- Ravindranathan, Deepak
Publication type:
Article
FHIR Genomics: enabling standardization for precision medicine use cases.
Published in:
NPJ Genomic Medicine, 2020, v. 5, n. 1, p. 1, doi. 10.1038/s41525-020-0115-6
By:
- Alterovitz, Gil;
- Heale, Bret;
- Jones, James;
- Kreda, David;
- Lin, Fan;
- Liu, Lei;
- Liu, Xin;
- Mandl, Kenneth D.;
- Poloway, David W.;
- Ramoni, Rachel;
- Wagner, Alex;
- Warner, Jeremy L.
Publication type:
Article
Quantitating and assessing interoperability between electronic health records.
Published in:
2022
By:
- Bernstam, Elmer V;
- Warner, Jeremy L;
- Krauss, John C;
- Ambinder, Edward;
- Rubinstein, Wendy S;
- Komatsoulis, George;
- Miller, Robert S;
- Chen, James L
Publication type:
journal article
Recommendations for patient similarity classes: results of the AMIA 2019 workshop on defining patient similarity.
Published in:
2020
By:
- Seligson, Nathan D;
- Warner, Jeremy L;
- Dalton, William S;
- Martin, David;
- Miller, Robert S;
- Patt, Debra;
- Kehl, Kenneth L;
- Palchuk, Matvey B;
- Alterovitz, Gil;
- Wiley, Laura K;
- Huang, Ming;
- Shen, Feichen;
- Wang, Yanshan;
- Nguyen, Khoa A;
- Wong, Anthony F;
- Meric-Bernstam, Funda;
- Bernstam, Elmer V;
- Chen, James L
Publication type:
journal article
The therapy is making me sick: how online portal communications between breast cancer patients and physicians indicate medication discontinuation.
Published in:
2018
By:
- Yin, Zhijun;
- Harrell, Morgan;
- Warner, Jeremy L;
- Chen, Qingxia;
- Fabbri, Daniel;
- Malin, Bradley A
Publication type:
journal article
CUSTOM-SEQ: a prototype for oncology rapid learning in a comprehensive EHR environment.
Published in:
2016
By:
- Warner, Jeremy L.;
- Wang, Lucy;
- Pao, William;
- Sosman, Jeffrey A.;
- Atreya, Ravi V.;
- Carney, Pam;
- Levy, Mia A.
Publication type:
journal article
Pragmatic precision oncology: the secondary uses of clinical tumor molecular profiling.
Published in:
2016
By:
- Rioth, Matthew J.;
- Thota, Ramya;
- Staggs, David B.;
- Johnson, Douglas B.;
- Warner, Jeremy L.
Publication type:
journal article
SMART precision cancer medicine: a FHIR-based app to provide genomic information at the point of care.
Published in:
2016
By:
- Warner, Jeremy L.;
- Rioth, Matthew J.;
- Mandl, Kenneth D.;
- Mandel, Joshua C.;
- Kreda, David A.;
- Kohane, Isaac S.;
- Carbone, Daniel;
- Oreto, Ross;
- Wang, Lucy;
- Shilin Zhu;
- Heming Yao;
- Alterovitz, Gil;
- Zhu, Shilin;
- Yao, Heming
Publication type:
journal article
Combining billing codes, clinical notes, and medications from electronic health records provides superior phenotyping performance.
Published in:
2016
By:
- Wei-Qi Wei;
- Teixeira, Pedro L.;
- Huan Mo;
- Cronin, Robert M.;
- Warner, Jeremy L.;
- Denny, Joshua C.;
- Wei, Wei-Qi;
- Mo, Huan
Publication type:
journal article
Development, implementation, and initial evaluation of a foundational open interoperability standard for oncology treatment planning and summarization.
Published in:
Journal of the American Medical Informatics Association, 2015, v. 22, n. 3, p. 577, doi. 10.1093/jamia/ocu015
By:
- Warner, Jeremy L.;
- Maddux, Suzanne E.;
- Hughes, Kevin S.;
- Krauss, John C.;
- Yu, Peter Paul;
- Shulman, Lawrence N.;
- Mayer, Deborah K.;
- Hogarth, Mike;
- Shafarman, Mark;
- Fiscalini, Allison Stover;
- Esserman, Laura;
- Alschuler, Liora;
- Koromia, George Augustine;
- Gonzaga, Zabrina;
- Ambinder, Edward P.
Publication type:
Article
Seeing the forest through the trees: uncovering phenomic complexity through interactive network visualization.
Published in:
Journal of the American Medical Informatics Association, 2015, v. 22, n. 2, p. 324, doi. 10.1136/amiajnl-2014-002965
By:
- Warner, Jeremy L.;
- Denny, Joshua C.;
- Kreda, David A.;
- Alterovitz, Gil
Publication type:
Article
Temporal phenome analysis of a large electronic health record cohort enables identification of hospital-acquired complications.
Published in:
Journal of the American Medical Informatics Association, 2013, v. 20, n. e2, p. e281, doi. 10.1136/amiajnl-2013-001861
By:
- Warner, Jeremy L.;
- Zollanvari, Amin;
- Quan Ding;
- Peijin Zhang;
- Snyder, Graham M.;
- Alterovitz, Gil
Publication type:
Article
External phenome analysis enables a rational federated query strategy to detect changing rates of treatment-related complications associated with multiple myeloma.
Published in:
Journal of the American Medical Informatics Association, 2013, v. 20, n. 4, p. 696, doi. 10.1136/amiajnl-2012-001355
By:
- Warner, Jeremy L.;
- Alterovitz, Gil;
- Bodio, Kelly;
- Joyce, Robin M.
Publication type:
Article
Evolving patterns in systemic treatment utilization and survival among older patients with advanced cutaneous melanoma.
Published in:
Cancer Medicine, 2024, v. 13, n. 16, p. 1, doi. 10.1002/cam4.70131
By:
- Hong, Yoon Duk;
- Enewold, Lindsey;
- Sharon, Elad;
- Warner, Jeremy L.;
- Davidoff, Amy J.;
- Zeruto, Chris;
- Mariotto, Angela B.
Publication type:
Article
Systematic review of infectious events with the Bruton tyrosine kinase inhibitor ibrutinib in the treatment of hematologic malignancies.
Published in:
European Journal of Haematology, 2018, v. 100, n. 4, p. 325, doi. 10.1111/ejh.13020
By:
- Tillman, Benjamin F.;
- Pauff, James M.;
- Satyanarayana, Gowri;
- Talbott, Mahsa;
- Warner, Jeremy L.
Publication type:
Article
Indication of Measures of Uncertainty for Statistical Significance in Abstracts of Published Oncology Trials: A Systematic Review and Meta-analysis.
Published in:
JAMA Network Open, 2019, v. 2, n. 12, p. e1917530, doi. 10.1001/jamanetworkopen.2019.17530
By:
- Rubinstein, Samuel M.;
- Sigworth, Elizabeth A.;
- Etemad, Shervin;
- Martin, Richard L.;
- Chen, Qingxia;
- Warner, Jeremy L.
Publication type:
Article
Travel-Time Disparities in Access to Proton Beam Therapy for Cancer Treatment.
Published in:
JAMA Network Open, 2024, v. 7, n. 5, p. e2410670, doi. 10.1001/jamanetworkopen.2024.10670
By:
- Burus, Todd;
- VanHelene, Alexander D.;
- Rooney, Michael K.;
- Lang Kuhs, Krystle A.;
- Christian, W. Jay;
- McNair, Christopher;
- Mishra, Sanjay;
- Paulino, Arnold C.;
- Smith, Grace L.;
- Frank, Steven J.;
- Warner, Jeremy L.
Publication type:
Article
Correlation Between Surrogate End Points and Overall Survival in a Multi-institutional Clinicogenomic Cohort of Patients With Non–Small Cell Lung or Colorectal Cancer.
Published in:
JAMA Network Open, 2021, v. 4, n. 7, p. e2117547, doi. 10.1001/jamanetworkopen.2021.17547
By:
- Kehl, Kenneth L.;
- Riely, Gregory J.;
- Lepisto, Eva M.;
- Lavery, Jessica A.;
- Warner, Jeremy L.;
- LeNoue-Newton, Michele L.;
- Sweeney, Shawn M.;
- Rudolph, Julia E.;
- Brown, Samantha;
- Yu, Celeste;
- Bedard, Philippe L.;
- Schrag, Deborah;
- Panageas, Katherine S.
Publication type:
Article
Early onset oral tongue squamous cell carcinoma: Associated factors and patient outcomes.
Published in:
Head & Neck, 2019, v. 41, n. 6, p. 1952, doi. 10.1002/hed.25650
By:
- Campbell, Benjamin R.;
- Sanders, Courtney B.;
- Netterville, James L.;
- Sinard, Robert J.;
- Rohde, Sarah L.;
- Langerman, Alexander;
- Mannion, Kyle;
- Kim, Young J.;
- Lang Kuhs, Krystle A.;
- Murphy, Barbara A.;
- Warner, Jeremy L.;
- Lewis, James S.;
- Smith, Derek K.
Publication type:
Article
Rare Variants in the Gene ALPL That Cause Hypophosphatasia Are Strongly Associated With Ovarian and Uterine Disorders.
Published in:
2018
By:
- Dahir, Kathryn M;
- Tilden, Daniel R;
- Warner, Jeremy L;
- Bastarache, Lisa;
- Smith, Derek K;
- Gifford, Aliya;
- Ramirez, Andrea H;
- Simmons, Jill;
- Black, Margo M;
- Newman, John H;
- Denny, Josh C;
- Simmons, Jill S
Publication type:
journal article
Risk Prediction Versus Diagnosis: Preserving Clinical Nuance in a Binary World.
Published in:
2009
By:
- Warner, Jeremy L.;
- Djulbegovic, Benjamin;
- Patrick, Gregory;
- Swerlick, Robert A.;
- Vickers, Andrew J.;
- Basch, Ethan;
- Kattan, Michael
Publication type:
Letter
Using topic modeling via non-negative matrix factorization to identify relationships between genetic variants and disease phenotypes: A case study of Lipoprotein(a) (LPA).
Published in:
PLoS ONE, 2019, v. 14, n. 2, p. 1, doi. 10.1371/journal.pone.0212112
By:
- Zhao, Juan;
- Feng, QiPing;
- Wu, Patrick;
- Warner, Jeremy L.;
- Denny, Joshua C.;
- Wei, Wei-Qi
Publication type:
Article
COVID-19 severity by vaccination status in the NCI COVID-19 and Cancer Patients Study (NCCAPS).
Published in:
JNCI: Journal of the National Cancer Institute, 2023, v. 115, n. 5, p. 597, doi. 10.1093/jnci/djad015
By:
- Best, Ana F;
- Bowman, Melissa;
- Li, Jessica;
- Mishkin, Grace E;
- Denicoff, Andrea;
- Shekfeh, Marwa;
- Rubinstein, Larry;
- Warner, Jeremy L;
- Rini, Brian;
- Korde, Larissa A
Publication type:
Article
COVID-19 Vaccine among Actively-Treated People with Cancer: A Glimpse into the Known Unknowns?
Published in:
2022
By:
- Thakkar, Astha;
- Mishra, Sanjay;
- Warner, Jeremy L
Publication type:
journal article
Integrating cancer genomic data into electronic health records.
Published in:
Genome Medicine, 2016, v. 8, p. 1, doi. 10.1186/s13073-016-0371-3
By:
- Warner, Jeremy L.;
- Jain, Sandeep K.;
- Levy, Mia A.
Publication type:
Article
Defining the complex phenotype of severe systemic loxoscelism using a large electronic health record cohort.
Published in:
PLoS ONE, 2017, v. 12, n. 4, p. 1, doi. 10.1371/journal.pone.0174941
By:
- Robinson, Jamie R.;
- Kennedy, Vanessa E.;
- Doss, Youssef;
- Bastarache, Lisa;
- Denny, Joshua;
- Warner, Jeremy L.
Publication type:
Article

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