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Role of moss and Arabidopsis zinc-finger homeodomain transcription factors in regulating plant architecture.
- Published in:
- Plant Biotechnology Reports, 2024, v. 18, n. 2, p. 223, doi. 10.1007/s11816-024-00897-2
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- Article
A large sequenced mutant library – valuable reverse genetic resource that covers 98% of sorghum genes.
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- Plant Journal, 2024, v. 117, n. 5, p. 1543, doi. 10.1111/tpj.16582
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- Article
HB31 and HB21 regulate floral architecture through miRNA396/GRF modules in Arabidopsis.
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- Plant Biotechnology Reports, 2024, v. 18, n. 1, p. 45, doi. 10.1007/s11816-023-00870-5
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- Article
A high-performance computational workflow to accelerate GATK SNP detection across a 25-genome dataset.
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- BMC Biology, 2024, v. 22, n. 1, p. 1, doi. 10.1186/s12915-024-01820-5
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- Article
Two related families of metal transferases, ZNG1 and ZNG2, are involved in acclimation to poor Zn nutrition in Arabidopsis.
- Published in:
- Frontiers in Plant Science, 2023, p. 1, doi. 10.3389/fpls.2023.1237722
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- Article
Computational Tools and Resources for Analysis and Exploration of Single-Cell Rnaseq Data in Agriculture.
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- Journal of Animal Science, 2023, v. 101, p. 267, doi. 10.1093/jas/skad341.303
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- Article
Registration of 252 sequenced sorghum mutants as a community reverse genetic resource.
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- Journal of Plant Registrations, 2023, v. 17, n. 3, p. 599, doi. 10.1002/plr2.20296
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- Article
An improved reference of the grapevine genome reasserts the origin of the PN40024 highly homozygous genotype.
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- G3: Genes | Genomes | Genetics, 2023, v. 13, n. 5, p. 1, doi. 10.1093/g3journal/jkad067
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- Article
Ten new high-quality genome assemblies for diverse bioenergy sorghum genotypes.
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- Frontiers in Plant Science, 2023, v. 13, p. 1, doi. 10.3389/fpls.2022.1040909
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- Article
Toward a data infrastructure for the Plant Cell Atlas.
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- Plant Physiology, 2023, v. 191, n. 1, p. 35, doi. 10.1093/plphys/kiac468
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- Article
Role of a ZF-HD Transcription Factor in miR157-Mediated Feed-Forward Regulatory Module That Determines Plant Architecture in Arabidopsis.
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- International Journal of Molecular Sciences, 2022, v. 23, n. 15, p. 8665, doi. 10.3390/ijms23158665
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- Article
Beyond COST Action INTEGRAPE: The Grapevine Genomics Encyclopedia Initiative.
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- Julius-Kühn-Archiv, 2022, n. 470, p. 81
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- Article
Sorghum root epigenetic landscape during limiting phosphorus conditions.
- Published in:
- Plant Direct, 2022, v. 6, n. 5, p. 1, doi. 10.1002/pld3.393
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- Publication type:
- Article
Experimental demonstration and pan-structurome prediction of climate-associated riboSNitches in Arabidopsis.
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- Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02656-4
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- Article
Author Correction: Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline.
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- 2022
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- Correction Notice
SorghumBase: a web-based portal for sorghum genetic information and community advancement.
- Published in:
- Planta: An International Journal of Plant Biology, 2022, v. 255, n. 2, p. 1, doi. 10.1007/s00425-022-03821-6
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- Article
Ranked choice voting for representative transcripts with TRaCE.
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- Bioinformatics, 2022, v. 38, n. 1, p. 261, doi. 10.1093/bioinformatics/btab542
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- Article
Gene disruption by structural mutations drives selection in US rice breeding over the last century.
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- PLoS Genetics, 2021, v. 17, n. 3, p. 1, doi. 10.1371/journal.pgen.1009389
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- Article
BSAseq: an interactive and integrated web-based workflow for identification of causal mutations in bulked F2 populations.
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- Bioinformatics, 2021, v. 37, n. 3, p. 382, doi. 10.1093/bioinformatics/btaa709
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- Article
Amino Acid and Carbohydrate Metabolism Are Coordinated to Maintain Energetic Balance during Drought in Sugarcane.
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- International Journal of Molecular Sciences, 2020, v. 21, n. 23, p. 9124, doi. 10.3390/ijms21239124
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- Article
Highly accurate long-read HiFi sequencing data for five complex genomes.
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- Scientific Data, 2020, v. 7, n. 1, p. N.PAG, doi. 10.1038/s41597-020-00743-4
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- Article
Gapless assembly of maize chromosomes using long-read technologies.
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- Genome Biology, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s13059-020-02029-9
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- Article
Management, Analyses, and Distribution of the MaizeCODE Data on the Cloud.
- Published in:
- Frontiers in Plant Science, 2020, p. 1, doi. 10.3389/fpls.2020.00289
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- Article
Haplotyping the Vitis collinear core genome with rhAmpSeq improves marker transferability in a diverse genus.
- Published in:
- Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-019-14280-1
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- Article
Plant Reactome: a knowledgebase and resource for comparative pathway analysis.
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- Nucleic Acids Research, 2020, v. 48, n. D1, p. D1093, doi. 10.1093/nar/gkz996
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- Publication type:
- Article
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline.
- Published in:
- Genome Biology, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s13059-019-1905-y
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- Publication type:
- Article
Sorghum MSD3 Encodes an ω-3 Fatty Acid Desaturase that Increases Grain Number by Reducing Jasmonic Acid Levels.
- Published in:
- International Journal of Molecular Sciences, 2019, v. 20, n. 21, p. 5359, doi. 10.3390/ijms20215359
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- Article
Double triage to identify poorly annotated genes in maize: The missing link in community curation.
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- PLoS ONE, 2019, v. 14, n. 10, p. 1, doi. 10.1371/journal.pone.0224086
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- Article
Fertility of Pedicellate Spikelets in Sorghum Is Controlled by a Jasmonic Acid Regulatory Module.
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- International Journal of Molecular Sciences, 2019, v. 20, n. 19, p. 4951, doi. 10.3390/ijms20194951
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- Article
Dominant and Poorly Penetrant Phenotypes of Maize Unstable factor for orange1 Are Caused by DNA Methylation Changes at a Linked Transposon.
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- Plant Cell, 2018, v. 30, n. 12, p. 3006, doi. 10.1105/tpc.18.00546
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- Article
SciApps: a cloud-based platform for reproducible bioinformatics workflows.
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- Bioinformatics, 2018, v. 34, n. 22, p. 3917, doi. 10.1093/bioinformatics/bty439
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- Article
Predicting gene structure changes resulting from genetic variants via exon definition features.
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- Bioinformatics, 2018, v. 34, n. 21, p. 3616, doi. 10.1093/bioinformatics/bty324
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- Article
KBase: The United States Department of Energy Systems Biology Knowledgebase.
- Published in:
- Nature Biotechnology, 2018, v. 36, n. 7, p. 566, doi. 10.1038/nbt.4163
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- Article
Efficient Identification of Causal Mutations through Sequencing of Bulked F<sub>2</sub> from Two Allelic Bloomless Mutants of Sorghum bicolor.
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- Frontiers in Plant Science, 2018, p. 1, doi. 10.3389/fpls.2017.02267
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- Publication type:
- Article
Plastid and Mitochondrial Peptidase Network in Arabidopsis thaliana: A Foundation for Testing Genetic Interactions and Functions in Organellar Proteostasis.
- Published in:
- Plant Cell, 2017, v. 29, n. 11, p. 2687, doi. 10.1105/tpc.17.00481
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- Article
High-throughput interpretation of gene structure changes in human and nonhuman resequencing data, using ACE.
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- Bioinformatics, 2017, v. 33, n. 10, p. 1437, doi. 10.1093/bioinformatics/btw799
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- Article
DNA methylation and gene expression regulation associated with vascularization in Sorghum bicolor.
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- New Phytologist, 2017, v. 214, n. 3, p. 1213, doi. 10.1111/nph.14448
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- Article
Plant Reactome: a resource for plant pathways and comparative analysis.
- Published in:
- Nucleic Acids Research, 2017, v. 45, n. D1, p. D1029, doi. 10.1093/nar/gkw932
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- Publication type:
- Article
Sorghum Mutant Resource as an Efficient Platform for Gene Discovery in Grasses.
- Published in:
- Plant Cell, 2016, v. 28, n. 7, p. 1551, doi. 10.1105/tpc.16.00373
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- Publication type:
- Article
Large-scale atlas of microarray data reveals the distinct expression landscape of different tissues in Arabidopsis.
- Published in:
- Plant Journal, 2016, v. 86, n. 6, p. 472, doi. 10.1111/tpj.13175
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- Publication type:
- Article
Unveiling the complexity of the maize transcriptome by single-molecule long-read sequencing.
- Published in:
- Nature Communications, 2016, v. 7, n. 6, p. 11708, doi. 10.1038/ncomms11708
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- Article
The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences.
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- PLoS Biology, 2016, v. 14, n. 1, p. 1, doi. 10.1371/journal.pbio.1002342
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- Article
An ultra-high-density map as a community resource for discerning the genetic basis of quantitative traits in maize.
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- BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2242-5
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- Article
Correction: Metabolomic Profiling of the Nectars of Aquilegia pubescens and A. Canadensis.
- Published in:
- PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0141384
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- Publication type:
- Article
Metabolomic Profiling of the Nectars of Aquilegia pubescens and A. Canadensis.
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- PLoS ONE, 2015, v. 10, n. 5, p. 1, doi. 10.1371/journal.pone.0124501
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- Publication type:
- Article
A genome-wide association study platform built on iPlant cyber-infrastructure.
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- Concurrency & Computation: Practice & Experience, 2015, v. 27, n. 2, p. 420, doi. 10.1002/cpe.3236
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- Publication type:
- Article
Automated Update, Revision, and Quality Control of the Maize Genome Annotations Using MAKER-P Improves the B73 RefGen_v3 Gene Models and Identifies New Genes<sup>[OPEN]</sup>.
- Published in:
- Plant Physiology, 2015, v. 167, n. 1, p. 25, doi. 10.1104/pp.114.245027
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- Publication type:
- Article
Whole genome de novo assemblies of three divergent strains of rice, Oryza sativa, document novel gene space of aus and indica.
- Published in:
- Genome Biology, 2014, v. 15, n. 11, p. 1, doi. 10.1186/s13059-014-0506-z
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- Article
Disentangling Methodological and Biological Sources of Gene Tree Discordance on Oryza (Poaceae) Chromosome 3.
- Published in:
- Systematic Biology, 2014, v. 63, n. 5, p. 645, doi. 10.1093/sysbio/syu027
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- Article
MAKER-P: A Tool Kit for the Rapid Creation, Management, and Quality Control of Plant Genome Annotations.
- Published in:
- Plant Physiology, 2014, v. 164, n. 2, p. 513, doi. 10.1104/pp.113.230144
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- Article