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Computer Simulations of Type I Gas Hydrates in the Presence of Methanol.
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- Annals of the New York Academy of Sciences, 1994, v. 715, n. 1, p. 540, doi. 10.1111/j.1749-6632.1994.tb38880.x
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- Article
Linking the growth inhibition response from the National Cancer Institute's anticancer screen to gene expression levels and other molecular target data.
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- Bioinformatics, 2003, v. 19, n. 17, p. 2212, doi. 10.1093/bioinformatics/btg302
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- Article
Iterative sequence/secondary structure search for protein homologs: comparison with amino acid sequence alignments and application to fold recognition in genome databases.
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- Bioinformatics, 2000, v. 16, n. 11, p. 988, doi. 10.1093/bioinformatics/16.11.988
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- Article
Phenotypic Characterization of a Novel Virulence-Factor Deletion Strain of Burkholderia mallei That Provides Partial Protection against Inhalational Glanders in Mice.
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- Frontiers in Cellular & Infection Microbiology, 2016, v. 6, p. 1, doi. 10.3389/fcimb.2016.00021
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- Article
Dengue virus antibody database: Systematically linking serotype-specificity with epitope mapping in dengue virus.
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- PLoS Neglected Tropical Diseases, 2017, v. 11, n. 2, p. 1, doi. 10.1371/journal.pntd.0005395
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- Article
Mechanisms of action of Coxiella burnetii effectors inferred from host-pathogen protein interactions.
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- PLoS ONE, 2017, v. 12, n. 11, p. 1, doi. 10.1371/journal.pone.0188071
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Metabolic host responses to malarial infection during the intraerythrocytic developmental cycle.
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- BMC Systems Biology, 2016, v. 10, p. 1, doi. 10.1186/s12918-016-0291-2
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Bridging the gap between gene expression and metabolic phenotype via kinetic models.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-63
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- Article
Development and analysis of an in vivocompatible metabolic network of Mycobacterium tuberculosis.
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- BMC Systems Biology, 2010, v. 4, p. 160, doi. 10.1186/1752-0509-4-160
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Evidence of probabilistic behaviour in protein interaction networks.
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- BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-11
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- Article
Can computationally designed protein sequences improve secondary structure prediction?
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- PEDS: Protein Engineering, Design & Selection, 2011, v. 24, n. 5, p. 455, doi. 10.1093/protein/gzr003
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- Article
Vinorelbine and epirubicin share common features with polysialic acid and modulate neuronal and glial functions.
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- Journal of Neurochemistry, 2016, v. 136, n. 1, p. 48, doi. 10.1111/jnc.13383
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- Article
Nonyloxytryptamine mimics polysialic acid and modulates neuronal and glial functions in cell culture.
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- Journal of Neurochemistry, 2014, v. 128, n. 1, p. 88, doi. 10.1111/jnc.12408
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Front cover: Immunostaining for P0 (green) and neurofilament (red) of co-cultured dorsal root ganglion neurons and Schwann cells treated with the PSA mimetic nonyloxytryptamine after 21 DIV. DAPI staining (blue) was used to visualize cellular nuclei. Note that the number of P0/neurofilament double positive internodes on processes of dorsal root ganglion neurons is a measure for myelination.
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- Journal of Neurochemistry, 2014, v. 128, n. 1, p. 00, doi. 10.1111/jnc.12530
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- Article
Identifying metabolic adaptations characteristic of cardiotoxicity using paired transcriptomics and metabolomics data integrated with a computational model of heart metabolism.
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- PLoS Computational Biology, 2024, v. 20, n. 2, p. 1, doi. 10.1371/journal.pcbi.1011919
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Metabolic network-based predictions of toxicant-induced metabolite changes in the laboratory rat.
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- Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-30149-7
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A reverse-phase protein microarray-based screen identifies host signaling dynamics upon Burkholderia spp. infection.
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- Frontiers in Microbiology, 2015, p. 1, doi. 10.3389/fmicb.2015.00683
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Reconciled rat and human metabolic networks for comparative toxicogenomics and biomarker predictions.
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- Nature Communications, 2017, v. 8, n. 2, p. 14250, doi. 10.1038/ncomms14250
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A systems biology strategy to identify molecular mechanisms of action and protein indicators of traumatic brain injury.
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- Journal of Neuroscience Research, 2015, v. 93, n. 2, p. 199, doi. 10.1002/jnr.23503
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Comparative Proteomic Analysis of Liver Steatosis and Fibrosis after Oral Hepatotoxicant Administration in Sprague-Dawley Rats.
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- Toxicologic Pathology, 2018, v. 46, n. 2, p. 202, doi. 10.1177/0192623317747549
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Probing Liver Injuries Induced by Thioacetamide in Human In Vitro Pooled Hepatocyte Experiments.
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- International Journal of Molecular Sciences, 2024, v. 25, n. 6, p. 3265, doi. 10.3390/ijms25063265
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High-Throughput Transcriptomics Differentiates Toxic versus Non-Toxic Chemical Exposures Using a Rat Liver Model.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 24, p. 17425, doi. 10.3390/ijms242417425
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Assessing Kidney Injury Induced by Mercuric Chloride in Guinea Pigs with In Vivo and In Vitro Experiments.
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- International Journal of Molecular Sciences, 2023, v. 24, n. 8, p. 7434, doi. 10.3390/ijms24087434
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Toxicant-Induced Metabolic Alterations in Lipid and Amino Acid Pathways Are Predictive of Acute Liver Toxicity in Rats.
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- International Journal of Molecular Sciences, 2020, v. 21, n. 21, p. 8250, doi. 10.3390/ijms21218250
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Concordance between Thioacetamide-Induced Liver Injury in Rat and Human In Vitro Gene Expression Data.
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- International Journal of Molecular Sciences, 2020, v. 21, n. 11, p. 4017, doi. 10.3390/ijms21114017
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DBSecSys: a database of Burkholderia mallei secretion systems.
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- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-244
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Exploiting large-scale drug-protein interaction information for computational drug repurposing.
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- BMC Bioinformatics, 2014, v. 15, n. 1, p. 1, doi. 10.1186/1471-2105-15-210
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Reconstituting protein interaction networks using parameter-dependent domain-domain interactions.
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- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-154
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Inferring high-confidence human protein-protein interactions.
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- BMC Bioinformatics, 2012, v. 13, n. 1, p. 79, doi. 10.1186/1471-2105-13-79
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Enabling data-limited chemical bioactivity predictions through deep neural network transfer learning.
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- Journal of Computer-Aided Molecular Design, 2022, v. 36, n. 12, p. 867, doi. 10.1007/s10822-022-00486-x
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Exposure to PFAS chemicals induces sex-dependent alterations in key rate-limiting steps of lipid metabolism in liver steatosis.
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- Frontiers in Toxicology, 2024, p. 1, doi. 10.3389/ftox.2024.1390196
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AI algorithm for personalized resource allocation and treatment of hemorrhage casualties.
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- Frontiers in Physiology, 2024, p. 1, doi. 10.3389/fphys.2024.1327948
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Metabolic responses in blood-stage malaria parasites associated with increased and decreased sensitivity to PfATP4 inhibitors.
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- Malaria Journal, 2023, v. 21, n. 1, p. 1, doi. 10.1186/s12936-023-04481-x
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Mining kidney toxicogenomic data by using gene co-expression modules.
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- BMC Genomics, 2016, v. 17, p. 1, doi. 10.1186/s12864-016-3143-y
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Using host-pathogen protein interactions to identify and characterize Francisella tularensis virulence factors.
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- BMC Genomics, 2015, v. 16, p. 1, doi. 10.1186/s12864-015-2351-1
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A strategy for evaluating pathway analysis methods.
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- BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1866-7
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DBSecSys 2.0: a database of Burkholderia mallei and Burkholderia pseudomallei secretion systems.
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- BMC Bioinformatics, 2016, v. 17, p. 1, doi. 10.1186/s12859-016-1242-z
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- Article
Simplified amino acid alphabets for protein fold recognition and implications for folding.
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- Protein Engineering, 2000, v. 13, n. 3, p. 149, doi. 10.1093/protein/13.3.149
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Data-driven identification of structural alerts for mitigating the risk of drug-induced human liver injuries.
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- Journal of Cheminformatics, 2015, v. 7, n. 1, p. 1, doi. 10.1186/s13321-015-0053-y
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- Article
A Fusion-Inhibiting Peptide against Rift Valley Fever Virus Inhibits Multiple, Diverse Viruses.
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- PLoS Neglected Tropical Diseases, 2013, v. 7, n. 9, p. 1, doi. 10.1371/journal.pntd.0002430
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A Fusion-Inhibiting Peptide against Rift Valley Fever Virus Inhibits Multiple, Diverse Viruses.
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- PLoS Neglected Tropical Diseases, 2013, v. 7, n. 9, p. 1, doi. 10.1371/journal.pntd.0002430
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- Article
DOVIS: an implementation for high-throughput virtual screening using AutoDock.
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- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-126
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A mevalonate bypass system facilitates elucidation of plastid biology in malaria parasites.
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- PLoS Pathogens, 2020, v. 16, n. 2, p. 1, doi. 10.1371/journal.ppat.1008316
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- Article
Biofilm Formation Mechanisms of Pseudomonas aeruginosa Predicted via Genome-Scale Kinetic Models of Bacterial Metabolism.
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- PLoS Computational Biology, 2015, v. 11, n. 10, p. 1, doi. 10.1371/journal.pcbi.1004452
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Mining Host-Pathogen Protein Interactions to Characterize Burkholderia mallei Infectivity Mechanisms.
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- PLoS Computational Biology, 2015, v. 11, n. 3, p. 1, doi. 10.1371/journal.pcbi.1004088
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Modeling Phenotypic Metabolic Adaptations of Mycobacterium tuberculosis H37Rv under Hypoxia.
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- PLoS Computational Biology, 2012, v. 8, n. 9, p. 1, doi. 10.1371/journal.pcbi.1002688
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Quantitative Predictions of Binding Free Energy Changes in Drug-Resistant Influenza Neuraminidase.
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- PLoS Computational Biology, 2012, v. 8, n. 8, p. 1, doi. 10.1371/journal.pcbi.1002665
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- Article
A Novel Scoring Approach for Protein Co-Purification Data Reveals High Interaction Specificity.
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- PLoS Computational Biology, 2009, v. 5, n. 9, p. 1, doi. 10.1371/journal.pcbi.1000515
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Probing the Extent of Randomness in Protein Interaction Networks.
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- PLoS Computational Biology, 2008, v. 4, n. 7, p. 1, doi. 10.1371/journal.pcbi.1000114
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- Article
Data-driven prediction of adverse drug reactions induced by drug-drug interactions.
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- BMC Pharmacology & Toxicology, 2017, v. 18, p. 1, doi. 10.1186/s40360-017-0153-6
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- Article