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A NEWLY DISCOVERED GUY DE CHAULIAC MANUSCRIPT.
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- Notes & Queries, 1991, v. 38, n. 2, p. 159
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- Article
Transient interdomain interactions in free USP14 shape its conformational ensemble.
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- Protein Science: A Publication of the Protein Society, 2024, v. 33, n. 5, p. 1, doi. 10.1002/pro.4975
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- Article
Insights into mechanisms of MALT1 allostery from NMR and AlphaFold dynamic analyses.
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- Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-024-06558-y
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- Article
Predicting protein-peptide interaction sites using distant protein complexes as structural templates.
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- Scientific Reports, 2019, v. 9, n. 1, p. 1, doi. 10.1038/s41598-019-38498-7
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- Article
DNA-PK controls Apollo's access to leading-end telomeres.
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- Nucleic Acids Research, 2024, v. 52, n. 8, p. 4313, doi. 10.1093/nar/gkae105
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- Article
Improved model quality assessment using ProQ2.
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- BMC Bioinformatics, 2012, v. 13, n. 1, p. 1, doi. 10.1186/1471-2105-13-224
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- Article
Proteus: a random forest classifier to predict disorder-to-order transitioning binding regions in intrinsically disordered proteins.
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- Journal of Computer-Aided Molecular Design, 2017, v. 31, n. 5, p. 453, doi. 10.1007/s10822-017-0020-y
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- Article
Using multiple templates to improve quality of homology models in automated homology modeling.
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- Protein Science: A Publication of the Protein Society, 2008, v. 17, n. 6, p. 990, doi. 10.1110/ps.073344908
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- Article
Identification of correct regions in protein models using structural, alignment, and consensus information.
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- Protein Science: A Publication of the Protein Society, 2006, v. 15, n. 4, p. 900, doi. 10.1110/ps.051799606
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- Article
All are not equal: A benchmark of different homology modeling programs.
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- Protein Science: A Publication of the Protein Society, 2005, v. 14, n. 5, p. 1315, doi. 10.1110/ps.041253405
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- Article
Can correct protein models be identified?
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- Protein Science: A Publication of the Protein Society, 2003, v. 12, n. 5, p. 1073, doi. 10.1110/ps.0236803
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- Article
AFsample: improving multimer prediction with AlphaFold using massive sampling.
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- Bioinformatics, 2023, v. 39, n. 9, p. 1, doi. 10.1093/bioinformatics/btad573
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- Article
InterPepScore: a deep learning score for improving the FlexPepDock refinement protocol.
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- Bioinformatics, 2022, v. 38, n. 12, p. 3209, doi. 10.1093/bioinformatics/btac325
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- Article
InterLig: improved ligand-based virtual screening using topologically independent structural alignments.
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- Bioinformatics, 2020, v. 36, n. 10, p. 3266, doi. 10.1093/bioinformatics/btaa089
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- Article
InterPep2: global peptide–protein docking using interaction surface templates.
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- Bioinformatics, 2020, v. 36, n. 8, p. 2458, doi. 10.1093/bioinformatics/btaa005
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- Article
Topology independent structural matching discovers novel templates for protein interfaces.
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- Bioinformatics, 2018, v. 34, n. 17, p. i787, doi. 10.1093/bioinformatics/bty587
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- Article
The Free Energy Barrier for Arginine Gating Charge Translation Is Altered by Mutations in the Voltage Sensor Domain.
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- PLoS ONE, 2012, v. 7, n. 10, p. 1, doi. 10.1371/journal.pone.0045880
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- Article
One amino acid makes a difference-Characterization of a new TPMT allele and the influence of SAM on TPMT stability.
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- Scientific Reports, 2017, p. 46428, doi. 10.1038/srep46428
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- Article
Improved multimer prediction using massive sampling with AlphaFold in CASP15.
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- Proteins, 2023, v. 91, n. 12, p. 1734, doi. 10.1002/prot.26562
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- Article
Estimation of model accuracy in CASP13.
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- Proteins, 2019, v. 87, n. 12, p. 1361, doi. 10.1002/prot.25767
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- Article
Improved protein model quality assessments by changing the target function.
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- Proteins, 2018, v. 86, n. 6, p. 654, doi. 10.1002/prot.25492
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- Article
Methods for estimation of model accuracy in CASP12.
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- Proteins, 2018, v. 86, n. 1, p. 361, doi. 10.1002/prot.25395
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- Article
InterPred: A pipeline to identify and model protein-protein interactions.
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- Proteins, 2017, v. 85, n. 6, p. 1159, doi. 10.1002/prot.25280
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Assessment of global and local model quality in CASP8 using Pcons and ProQ.
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- Proteins, 2009, v. 77, n. S9, p. 167, doi. 10.1002/prot.22476
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- Article
Prediction of global and local model quality in CASP7 using Pcons and ProQ.
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- Proteins, 2007, v. 69, n. S8, p. 184, doi. 10.1002/prot.21774
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- Article
Profile-profile methods provide improved fold-recognition: A study of different profile-profile alignment methods.
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- Proteins, 2004, v. 57, n. 1, p. 188, doi. 10.1002/prot.20184
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- Article
Using evolutionary information for the query and target improves fold recognition.
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- Proteins, 2004, v. 54, n. 2, p. 342
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- Article
Automatic consensus-based fold recognition using Pcons, ProQ, and Pmodeller.
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- Proteins, 2003, v. 53, n. S6, p. 534, doi. 10.1002/prot.10536
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- Article
MYC oncoprotein directly interacts with its chromatin cofactor PNUTS to recruit PP1 phosphatase.
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- Nucleic Acids Research, 2022, v. 50, n. 6, p. 3505, doi. 10.1093/nar/gkac138
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- Article
Solution NMR structure of the TRIM21 B-box2 and identification of residues involved in its interaction with the RING domain.
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- PLoS ONE, 2017, v. 12, n. 7, p. 1, doi. 10.1371/journal.pone.0181551
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Biophysical characterization of the calmodulin-like domain of Plasmodium falciparum calcium dependent protein kinase 3.
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- PLoS ONE, 2017, v. 12, n. 7, p. 1, doi. 10.1371/journal.pone.0181721
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- Article
ProQ3D: improved model quality assessments using deep learning.
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- Bioinformatics, 2017, v. 33, n. 10, p. 1578, doi. 10.1093/bioinformatics/btw819
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- Article
Finding correct protein-protein docking models using ProQDock.
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- Bioinformatics, 2016, v. 32, n. 12, p. i262, doi. 10.1093/bioinformatics/btw257
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- Article
ProQ2: estimation of model accuracy implemented in Rosetta.
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- Bioinformatics, 2016, v. 32, n. 9, p. 1411, doi. 10.1093/bioinformatics/btv767
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- Article
ProQM-resample: improved model quality assessment for membrane proteins by limited conformational sampling.
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- Bioinformatics, 2014, v. 30, n. 15, p. 2221, doi. 10.1093/bioinformatics/btu187
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- Article
Improved predictions by Pcons.net using multiple templates.
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- Bioinformatics, 2011, v. 27, n. 3, p. 426, doi. 10.1093/bioinformatics/btq664
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- Article
Model quality assessment for membrane proteins.
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- Bioinformatics, 2010, v. 26, n. 24, p. 3067, doi. 10.1093/bioinformatics/btq581
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- Article
Pcons5: combining consensus, structural evaluation and fold recognition scores.
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- Bioinformatics, 2005, v. 21, n. 23, p. 4248, doi. 10.1093/bioinformatics/bti702
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- Article
Pcons.net: protein structure prediction meta server.
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- Nucleic Acids Research, 2007, v. 35, n. suppl_2, p. W369, doi. 10.1093/nar/gkm319
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- Article
rawMSA: End-to-end Deep Learning using raw Multiple Sequence Alignments.
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- PLoS ONE, 2019, v. 14, n. 8, p. 1, doi. 10.1371/journal.pone.0220182
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- Article
Tertiary Windowing to Detect Positive Diversifying Selection.
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- Journal of Molecular Evolution, 2005, v. 60, n. 4, p. 499, doi. 10.1007/s00239-004-0223-4
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- Article
Estimating local protein model quality: prospects for molecular replacement.
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- Acta Crystallographica: Section D, Structural Biology, 2020, v. 76, n. 3, p. 285, doi. 10.1107/S2059798320000972
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- Article
DockQ: A Quality Measure for Protein-Protein Docking Models.
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- PLoS ONE, 2016, v. 11, n. 8, p. 1, doi. 10.1371/journal.pone.0161879
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- Article