Found: 8

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  • BreakDancer: an algorithm for high-resolution mapping of genomic structural variation.

    Published in:
    Nature Methods, 2009, v. 6, n. 9, p. 677, doi. 10.1038/nmeth.1363
    By:
    • Chen, Ken;
    • Wallis, John W.;
    • McLellan, Michael D.;
    • Larson, David E.;
    • Kalicki, Joelle M.;
    • Pohl, Craig S.;
    • McGrath, Sean D.;
    • Wendl, Michael C.;
    • Qunyuan Zhang;
    • Locke, Devin P.;
    • Xiaoqi Shi;
    • Fulton, Robert S.;
    • Ley, Timothy J.;
    • Wilson, Richard K.;
    • Li Ding;
    • Mardis, Elaine R.
    Publication type:
    Article

  • Genome remodelling in a basal-like breast cancer metastasis and xenograft.

    Published in:
    Nature, 2010, v. 464, n. 7291, p. 999, doi. 10.1038/nature08989
    By:
    • Li Ding;
    • Ellis, Matthew J.;
    • Shunqiang Li;
    • Larson, David E.;
    • Ken Chen;
    • Wallis, John W.;
    • Harris, Christopher C.;
    • McLellan, Michael D.;
    • Fulton, Robert S.;
    • Fulton, Lucinda L.;
    • Abbott, Rachel M.;
    • Hoog, Jeremy;
    • Dooling, David J.;
    • Koboldt, Daniel C.;
    • Schmidt, Heather;
    • Kalicki, Joelle;
    • Qunyuan Zhang;
    • Lei Chen;
    • Ling Lin;
    • Wendl, Michael C.
    Publication type:
    Article

  • BreakTrans: uncovering the genomic architecture of gene fusions.

    Published in:
    Genome Biology, 2013, v. 14, n. 8, p. R87, doi. 10.1186/gb-2013-14-8-r87
    By:
    • Ken Chen;
    • Navin, Nicholas E;
    • Yong Wang;
    • Schmidt, Heather K;
    • Wallis, John W;
    • Niu, Beifang;
    • Xian Fan;
    • Hao Zhao;
    • McLellan, Michael D;
    • Hoadley, Katherine A;
    • Mardis, Elaine R;
    • Ley, Timothy J;
    • Perou, Charles M;
    • Wilson, Richard K;
    • Li Ding
    Publication type:
    Article

  • A physical map of the chicken genome.

    Published in:
    Nature, 2004, v. 432, n. 7018, p. 761, doi. 10.1038/nature03030
    By:
    • Wallis, John W.;
    • Aerts, Jan;
    • Groenen, Martien A. M.;
    • Crooijmans, Richard P. M. A.;
    • Layman, Dan;
    • Graves, Tina A.;
    • Scheer, Debra E.;
    • Kremitzki, Colin;
    • Fedele, Mary J.;
    • Mudd, Nancy K.;
    • Cardenas, Marco;
    • Higginbotham, Jamey;
    • Carter, Jason;
    • McGrane, Rebecca;
    • Gaige, Tony;
    • Mead, Kelly;
    • Walker, Jason;
    • Albracht, Derek;
    • Davito, Jonathan;
    • Yang, Shiaw-Pyng
    Publication type:
    Article

  • Whole-genome analysis informs breast cancer response to aromatase inhibition.

    Published in:
    Nature, 2012, v. 486, n. 7403, p. 353, doi. 10.1038/nature11143
    By:
    • Ellis, Matthew J.;
    • Ding, Li;
    • Shen, Dong;
    • Luo, Jingqin;
    • Suman, Vera J.;
    • Wallis, John W.;
    • Van Tine, Brian A.;
    • Hoog, Jeremy;
    • Goiffon, Reece J.;
    • Goldstein, Theodore C.;
    • Ng, Sam;
    • Lin, Li;
    • Crowder, Robert;
    • Snider, Jacqueline;
    • Ballman, Karla;
    • Weber, Jason;
    • Chen, Ken;
    • Koboldt, Daniel C.;
    • Kandoth, Cyriac;
    • Schierding, William S.
    Publication type:
    Article

  • Clonal evolution in relapsed acute myeloid leukaemia revealed by whole-genome sequencing.

    Published in:
    Nature, 2012, v. 481, n. 7382, p. 506, doi. 10.1038/nature10738
    By:
    • Ding, Li;
    • Ley, Timothy J.;
    • Larson, David E.;
    • Miller, Christopher A.;
    • Koboldt, Daniel C.;
    • Welch, John S.;
    • Ritchey, Julie K.;
    • Young, Margaret A.;
    • Lamprecht, Tamara;
    • McLellan, Michael D.;
    • McMichael, Joshua F.;
    • Wallis, John W.;
    • Lu, Charles;
    • Shen, Dong;
    • Harris, Christopher C.;
    • Dooling, David J.;
    • Fulton, Robert S.;
    • Fulton, Lucinda L.;
    • Chen, Ken;
    • Schmidt, Heather
    Publication type:
    Article

  • BreakFusion: targeted assembly-based identification of gene fusions in whole transcriptome paired-end sequencing data.

    Published in:
    Bioinformatics, 2012, v. 28, n. 14, p. 1923, doi. 10.1093/bioinformatics/bts272
    By:
    • Chen, Ken;
    • Wallis, John W.;
    • Kandoth, Cyriac;
    • Kalicki−Veizer, Joelle M.;
    • Mungall, Karen L.;
    • Mungall, Andrew J.;
    • Jones, Steven J.;
    • Marra, Marco A.;
    • Ley, Timothy J.;
    • Mardis, Elaine R.;
    • Wilson, Richard K.;
    • Weinstein, John N.;
    • Ding, Li
    Publication type:
    Article

  • PathScan: a tool for discerning mutational significance in groups of putative cancer genes.

    Published in:
    Bioinformatics, 2011, v. 27, n. 12, p. 1595, doi. 10.1093/bioinformatics/btr193
    By:
    • Wendl, Michael C.;
    • Wallis, John W.;
    • Lin, Ling;
    • Kandoth, Cyriac;
    • Mardis, Elaine R.;
    • Wilson, Richard K.;
    • Ding, Li
    Publication type:
    Article