Works by Walia, Harkamal

Results: 69

Novel 3D Imaging Systems for High-Throughput Phenotyping of Plants.

Published in:

Remote Sensing, 2021, v. 13, n. 11, p. 2113, doi. 10.3390/rs13112113

By:

Gao, Tian;
Zhu, Feiyu;
Paul, Puneet;
Sandhu, Jaspreet;
Doku, Henry Akrofi;
Sun, Jianxin;
Pan, Yu;
Staswick, Paul;
Walia, Harkamal;
Yu, Hongfeng

Publication type:

Article

Genome‐wide discovery of natural variation in pre‐mRNA splicing and prioritising causal alternative splicing to salt stress response in rice.

Published in:

New Phytologist, 2021, v. 230, n. 3, p. 1273, doi. 10.1111/nph.17189

By:

Yu, Huihui;
Du, Qian;
Campbell, Malachy;
Yu, Bin;
Walia, Harkamal;
Zhang, Chi

Publication type:

Article

Loss of COMT activity reduces lateral root formation and alters the response to water limitation in sorghum brown midrib (bmr) 12 mutant.

Published in:

New Phytologist, 2021, v. 229, n. 5, p. 2780, doi. 10.1111/nph.17051

By:

Saluja, Manny;
Zhu, Feiyu;
Yu, Hongfeng;
Walia, Harkamal;
Sattler, Scott E.

Publication type:

Article

Allelic variation in rice Fertilization Independent Endosperm 1 contributes to grain width under high night temperature stress.

Published in:

New Phytologist, 2021, v. 229, n. 1, p. 335, doi. 10.1111/nph.16897

By:

Dhatt, Balpreet K.;
Paul, Puneet;
Sandhu, Jaspreet;
Hussain, Waseem;
Irvin, Larissa;
Zhu, Feiyu;
Adviento‐Borbe, Maria Arlene;
Lorence, Argelia;
Staswick, Paul;
Yu, Hongfeng;
Morota, Gota;
Walia, Harkamal

Publication type:

Article

Novel and Transgressive Salinity Tolerance in Recombinant Inbred Lines of Rice Created by Physiological Coupling-Uncoupling and Network Rewiring Effects.

Published in:

Frontiers in Plant Science, 2021, v. 11, p. N.PAG, doi. 10.3389/fpls.2021.615277

By:

Pabuayon, Isaiah C. M.;
Kitazumi, Ai;
Cushman, Kevin R.;
Singh, Rakesh Kumar;
Gregorio, Glenn B.;
Dhatt, Balpreet;
Zabet-Moghaddam, Masoud;
Walia, Harkamal;
de los Reyes, Benildo G.

Publication type:

Article

SeedExtractor : An Open-Source GUI for Seed Image Analysis.

Published in:

Frontiers in Plant Science, 2021, v. 11, p. N.PAG, doi. 10.3389/fpls.2020.581546

By:

Zhu, Feiyu;
Paul, Puneet;
Hussain, Waseem;
Wallman, Kyle;
Dhatt, Balpreet K.;
Sandhu, Jaspreet;
Irvin, Larissa;
Morota, Gota;
Yu, Hongfeng;
Walia, Harkamal

Publication type:

Article

Pervasive misannotation of microexons that are evolutionarily conserved and crucial for gene function in plants.

Published in:

Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-28449-8

By:

Yu, Huihui;
Li, Mu;
Sandhu, Jaspreet;
Sun, Guangchao;
Schnable, James C.;
Walia, Harkamal;
Xie, Weibo;
Yu, Bin;
Mower, Jeffrey P.;
Zhang, Chi

Publication type:

Article

Multi-trait random regression models increase genomic prediction accuracy for a temporal physiological trait derived from high-throughput phenotyping.

Published in:

PLoS ONE, 2020, v. 15, n. 2, p. 1, doi. 10.1371/journal.pone.0228118

By:

Baba, Toshimi;
Momen, Mehdi;
Campbell, Malachy T.;
Walia, Harkamal;
Morota, Gota

Publication type:

Article

Towards Establishment of a Rice Stress Response Interactome.

Published in:

PLoS Genetics, 2011, v. 7, n. 4, p. 1, doi. 10.1371/journal.pgen.1002020

By:

Young-Su Seo;
Chern, Mawsheng;
Bartley, Laura E.;
Muho Han;
Ki-Hong Jung;
Insuk Lee;
Walia, Harkamal;
Richter, Todd;
Xia Xu;
Cao, Peijian;
Wei Bai;
Ramanan, Rajeshwari;
Amonpant, Fawn;
Arul, Loganathan;
Canlas, Patrick E.;
Ruan, Randy;
Chang-Jin Park;
Xuewei Chen;
Sohyun Hwang;
Jong-Seong Jeon

Publication type:

Article

Expression analysis of barley ( Hordeum vulgare L.) during salinity stress.

Published in:

Functional & Integrative Genomics, 2006, v. 6, n. 2, p. 143, doi. 10.1007/s10142-005-0013-0

By:

Walia, Harkamal;
Wilson, Clyde;
Wahid, Abdul;
Condamine, Pascal;
Xinping Cui;
Close, Timothy J.

Publication type:

Article

Enhanced Cytokinin Synthesis in Tobacco Plants Expressing PSARK::IPT Prevents the Degradation of Photosynthetic Protein Complexes During Drought.

Published in:

Plant & Cell Physiology, 2010, v. 51, n. 11, p. 1929, doi. 10.1093/pcp/pcq143

By:

Rivero, Rosa M.;
Gimeno, Jacinta;
Van Deynze, Allen;
Walia, Harkamal;
Blumwald, Eduardo

Publication type:

Article

Metabolic Dynamics of Developing Rice Seeds Under High Night-Time Temperature Stress.

Published in:

Frontiers in Plant Science, 2019, v. 10, p. 1, doi. 10.3389/fpls.2019.01443

By:

Dhatt, Balpreet K.;
Abshire, Nathan;
Paul, Puneet;
Hasanthika, Kalani;
Sandhu, Jaspreet;
Zhang, Qi;
Obata, Toshihiro;
Walia, Harkamal

Publication type:

Article

Transient Heat Stress During Early Seed Development Primes Germination and Seedling Establishment in Rice.

Published in:

Frontiers in Plant Science, 2018, p. N.PAG, doi. 10.3389/fpls.2018.01768

By:

Begcy, Kevin;
Sandhu, Jaspreet;
Walia, Harkamal

Publication type:

Article

Genomic prediction of metabolic content in rice grain in response to warmer night conditions.

Published in:

Crop Science, 2025, v. 65, n. 1, p. 1, doi. 10.1002/csc2.21435

By:

Bi, Ye;
Walia, Harkamal;
Obata, Toshihiro;
Morota, Gota

Publication type:

Article

Evaluating metabolic and genomic data for predicting grain traits under high night temperature stress in rice.

Published in:

G3: Genes | Genomes | Genetics, 2023, v. 13, n. 5, p. 1, doi. 10.1093/g3journal/jkad052

By:

Ye Bi;
Yassue, Rafael Massahiro;
Paul, Puneet;
Dhatt, Balpreet Kaur;
Sandhu, Jaspreet;
Do, Phuc Thi;
Walia, Harkamal;
Obata, Toshihiro;
Morota, Gota

Publication type:

Article

Predicting Longitudinal Traits Derived from High-Throughput Phenomics in Contrasting Environments Using Genomic Legendre Polynomials and B-Splines.

Published in:

G3: Genes | Genomes | Genetics, 2019, v. 9, n. 10, p. 3369, doi. 10.1534/g3.119.400346

By:

Momen, Mehdi;
Campbell, Malachy T.;
Walia, Harkamal;
Morota, Gota

Publication type:

Article

Genomic Bayesian Confirmatory Factor Analysis and Bayesian Network To Characterize a Wide Spectrum of Rice Phenotypes.

Published in:

G3: Genes | Genomes | Genetics, 2019, v. 9, n. 6, p. 1975, doi. 10.1534/g3.119.400154

By:

Haipeng Yu;
Campbell, Malachy T.;
Qi Zhang;
Walia, Harkamal;
Morota, Gota

Publication type:

Article

Revisiting FR13A for submergence tolerance: beyond the SUB1A gene.

Published in:

Journal of Experimental Botany, 2024, v. 75, n. 18, p. 5477, doi. 10.1093/jxb/erae299

By:

Hussain, Waseem;
Anumalla, Mahender;
Ismail, Abdelbagi M;
Walia, Harkamal;
Singh, Vikas Kumar;
Kohli, Ajay;
Bhosale, Sankalp;
Bhardwaj, Hans

Publication type:

Article

Stress-induced deeper rooting introgression enhances wheat yield under terminal drought.

Published in:

Journal of Experimental Botany, 2023, v. 74, n. 16, p. 4862, doi. 10.1093/jxb/erad059

By:

Bacher, Harel;
Montagu, Aviad;
Herrmann, Ittai;
Walia, Harkamal;
Schwartz, Nimrod;
Peleg, Zvi

Publication type:

Article

Modifying root-to-shoot ratio improves root water influxes in wheat under drought stress.

Published in:

Journal of Experimental Botany, 2022, v. 73, n. 5, p. 1643, doi. 10.1093/jxb/erab500

By:

Bacher, Harel;
Sharaby, Yoav;
Walia, Harkamal;
Peleg, Zvi

Publication type:

Article

Leveraging genome-enabled growth models to study shoot growth responses to water deficit in rice.

Published in:

Journal of Experimental Botany, 2020, v. 71, n. 18, p. 5669, doi. 10.1093/jxb/eraa280

By:

Campbell, Malachy T;
Grondin, Alexandre;
Walia, Harkamal;
Morota, Gota

Publication type:

Article

Image Harvest: an open-source platform for high-throughput plant image processing and analysis.

Published in:

Journal of Experimental Botany, 2016, v. 67, n. 11, p. 3587, doi. 10.1093/jxb/erw176

By:

Knecht, Avi C.;
Campbell, Malachy T.;
Caprez, Adam;
Swanson, David R.;
Walia, Harkamal

Publication type:

Article

A non-destructive approach for measuring rice panicle-level photosynthetic responses using 3D-image reconstruction.

Published in:

Plant Methods, 2022, v. 18, n. 1, p. 1, doi. 10.1186/s13007-022-00959-y

By:

Dharni, Jaspinder Singh;
Dhatt, Balpreet Kaur;
Paul, Puneet;
Gao, Tian;
Awada, Tala;
Bacher, Harel;
Peleg, Zvi;
Staswick, Paul;
Hupp, Jason;
Yu, Hongfeng;
Walia, Harkamal

Publication type:

Article

Protein abundances are more conserved than mRNA abundances across diverse taxa.

Published in:

Proteomics, 2010, v. 10, n. 23, p. 4209, doi. 10.1002/pmic.201000327

By:

Laurent, Jon M.;
Vogel, Christine;
Kwon, Taejoon;
Craig, Stephanie A.;
Boutz, Daniel R.;
Huse, Holly K.;
Nozue, Kazunari;
Walia, Harkamal;
Whiteley, Marvin;
Ronald, Pamela C.;
Marcotte, Edward M.

Publication type:

Article

Genome-wide SNP discovery and linkage analysis in barley based on genes responsive to abiotic stress.

Published in:

Molecular Genetics & Genomics, 2005, v. 274, n. 5, p. 515, doi. 10.1007/s00438-005-0046-z

By:

Nils Rostoks;
Sharon Mudie;
Linda Cardle;
Joanne Russell;
Luke Ramsay;
Allan Booth;
Jan Svensson;
Steve Wanamaker;
Harkamal Walia;
Edmundo Rodriguez;
Peter Hedley;
Hui Liu;
Jenny Morris;
Timothy Close;
David Marshall;
Robbie Waugh

Publication type:

Article

Field‐based infrastructure and cyber–physical system for the study of high night air temperature stress in irrigated rice.

Published in:

Plant Phenome Journal, 2023, v. 6, n. 1, p. 1, doi. 10.1002/ppj2.20085

By:

Quiñones, Cherryl;
Adviento‐Borbe, Maria Arlene;
Larazo, Wenceslao;
Harris, Rodney Shea;
Mendez, Kharla;
Cunningham, Shannon S.;
Campbell, Zachary C.;
Medina‐Jimenez, Karina;
Hein, Nathan T.;
Wagner, Dan;
Ottis, Brian;
Walia, Harkamal;
Lorence, Argelia

Publication type:

Article

PhenoImage: An open‐source graphical user interface for plant image analysis.

Published in:

Plant Phenome Journal, 2021, v. 4, n. 1, p. 1, doi. 10.1002/ppj2.20015

By:

Zhu, Feiyu;
Saluja, Manny;
Dharni, Jaspinder Singh;
Paul, Puneet;
Sattler, Scott E.;
Staswick, Paul;
Walia, Harkamal;
Yu, Hongfeng

Publication type:

Article

Detection and validation of single feature polymorphisms using RNA expression data from a rice genome array.

Published in:

BMC Plant Biology, 2009, v. 9, p. 1, doi. 10.1186/1471-2229-9-65

By:

Sung-Hyun Kim;
Bhat, Prasanna R.;
Xinping Cui;
Walia, Harkamal;
Jin Xu;
Wanamaker, Steve;
Ismail, Abdelbagi M.;
Wilson, Clyde;
Close, Timothy J.

Publication type:

Article

Divergent phenotypic response of rice accessions to transient heat stress during early seed development.

Published in:

Plant Direct, 2020, v. 4, n. 1, p. N.PAG, doi. 10.1002/pld3.196

By:

Paul, Puneet;
Dhatt, Balpreet K.;
Sandhu, Jaspreet;
Hussain, Waseem;
Irvin, Larissa;
Morota, Gota;
Staswick, Paul;
Walia, Harkamal

Publication type:

Article

Network‐based feature selection reveals substructures of gene modules responding to salt stress in rice.

Published in:

Plant Direct, 2019, v. 3, n. 8, p. N.PAG, doi. 10.1002/pld3.154

By:

Du, Qian;
Campbell, Malachy;
Yu, Huihui;
Liu, Kan;
Walia, Harkamal;
Zhang, Qi;
Zhang, Chi

Publication type:

Article

ShinyAIM: Shiny‐based application of interactive Manhattan plots for longitudinal genome‐wide association studies.

Published in:

Plant Direct, 2018, v. 2, n. 10, p. N.PAG, doi. 10.1002/pld3.91

By:

Hussain, Waseem;
Campbell, Malachy;
Walia, Harkamal;
Morota, Gota

Publication type:

Article

Utilizing random regression models for genomic prediction of a longitudinal trait derived from high‐throughput phenotyping.

Published in:

Plant Direct, 2018, v. 2, n. 9, p. 1, doi. 10.1002/pld3.80

By:

Campbell, Malachy;
Walia, Harkamal;
Morota, Gota

Publication type:

Article

Gene Expression analysis associated with salt stress in a reciprocally crossed rice population.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-44757-4

By:

Razzaque, Samsad;
Elias, Sabrina M.;
Haque, Taslima;
Biswas, Sudip;
Jewel, G. M. Nurnabi Azad;
Rahman, Sazzadur;
Weng, Xiaoyu;
Ismail, Abdelbagi M.;
Walia, Harkamal;
Juenger, Thomas E.;
Seraj, Zeba I.

Publication type:

Article

SUB1 A-mediated submergence tolerance response in rice involves differential regulation of the brassinosteroid pathway.

Published in:

New Phytologist, 2013, v. 198, n. 4, p. 1060, doi. 10.1111/nph.12202

By:

Schmitz, Aaron J.;
Folsom, Jing J.;
Jikamaru, Yusuke;
Ronald, Pamela;
Walia, Harkamal

Publication type:

Article

Variance heterogeneity genome‐wide mapping for cadmium in bread wheat reveals novel genomic loci and epistatic interactions.

Published in:

Plant Genome, 2020, v. 13, n. 1, p. 1, doi. 10.1002/tpg2.20011

By:

Hussain, Waseem;
Campbell, Malachy T.;
Jarquin, Diego;
Walia, Harkamal;
Morota, Gota

Publication type:

Article

Rice Chalky Grain 5 regulates natural variation for grain quality under heat stress.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.1026472

By:

Nalini Chandran, Anil Kumar;
Sandhu, Jaspreet;
Irvin, Larissa;
Paul, Puneet;
Dhatt, Balpreet K.;
Hussain, Waseem;
Tian Gao;
Staswick, Paul;
Hongfeng Yu;
Morota, Gota;
Walia, Harkamal

Publication type:

Article

Endoplasmic reticulum stress pathway mediates the early heat stress response of developing rice seeds.

Published in:

Plant, Cell & Environment, 2021, v. 44, n. 8, p. 2604, doi. 10.1111/pce.14103

By:

Sandhu, Jaspreet;
Irvin, Larissa;
Liu, Kan;
Staswick, Paul;
Zhang, Chi;
Walia, Harkamal

Publication type:

Article

High night temperature effects on wheat and rice: Current status and way forward.

Published in:

Plant, Cell & Environment, 2021, v. 44, n. 7, p. 2049, doi. 10.1111/pce.14028

By:

Impa, Somayanda M.;
Raju, Bheemanahalli;
Hein, Nathan T.;
Sandhu, Jaspreet;
Prasad, P.V. Vara;
Walia, Harkamal;
Jagadish, S.V. Krishna

Publication type:

Article

COVER IMAGE.

Published in:

Plant, Cell & Environment, 2021, v. 44, n. 6, p. i, doi. 10.1111/pce.14081

By:

Hendel, Elisha;
Bacher, Harel;
Oksenberg, Adi;
Walia, Harkamal;
Schwartz, Nimrod;
Peleg, Zvi

Publication type:

Article

Deciphering the genetic basis of wheat seminal root anatomy uncovers ancestral axial conductance alleles.

Published in:

Plant, Cell & Environment, 2021, v. 44, n. 6, p. 1921, doi. 10.1111/pce.14035

By:

Hendel, Elisha;
Bacher, Harel;
Oksenberg, Adi;
Walia, Harkamal;
Schwartz, Nimrod;
Peleg, Zvi

Publication type:

Article

High night temperature induced changes in grain starch metabolism alters starch, protein, and lipid accumulation in winter wheat.

Published in:

Plant, Cell & Environment, 2020, v. 43, n. 2, p. 431, doi. 10.1111/pce.13671

By:

Impa, Somayanda M.;
Vennapusa, Amaranatha R.;
Bheemanahalli, Raju;
Sabela, David;
Boyle, Dan;
Walia, Harkamal;
Jagadish, S.V. Krishna

Publication type:

Article

Natural variation in LONELY GUY-Like 1 regulates rice grain weight under warmer night conditions.

Published in:

Plant Physiology, 2024, v. 196, n. 1, p. 164, doi. 10.1093/plphys/kiae313

By:

Sandhu, Jaspreet;
Irvin, Larissa;
Chandaran, Anil Kumar;
Oguro, Shohei;
Paul, Puneet;
Dhatt, Balpreet;
Hussain, Waseem;
Cunningham, Shannon S;
Quinones, Cherryl O;
Lorence, Argelia;
Adviento-Borbe, Maria Arlene;
Staswick, Paul;
Morota, Gota;
Walia, Harkamal

Publication type:

Article

Wild emmer introgression alters root-to-shoot growth dynamics in durum wheat in response to water stress.

Published in:

Plant Physiology, 2021, v. 187, n. 3, p. 1149, doi. 10.1093/plphys/kiab292

By:

Bacher, Harel;
Feiyu Zhu;
Tian Gao;
Kan Liu;
Dhatt, Balpreet K.;
Awada, Tala;
Chi Zhang;
Distelfeld, Assaf;
Hongfeng Yu;
Peleg, Zvi;
Walia, Harkamal

Publication type:

Article

MADS78 and MADS79 Are Essential Regulators of Early Seed Development in Rice.

Published in:

Plant Physiology, 2020, v. 182, n. 2, p. 933, doi. 10.1104/pp.19.00917

By:

Paul, Puneet;
Dhatt, Balpreet K.;
Miller, Michael;
Folsom, Jing J.;
Zhen Wang;
Krassovskaya, Inga;
Kan Liu;
Sandhu, Jaspreet;
Huihui Yu;
Chi Zhang;
Toshihiro Obata;
Staswick, Paul;
Walia, Harkamal

Publication type:

Article

Heat stress yields a unique MADS box transcription factor in determining seed size and thermal sensitivity.

Published in:

Plant Physiology, 2016, v. 171, n. 1, p. 606, doi. 10.1104/pp.15.01992

By:

Chen Chen;
Begcy, Kevin;
Kan Liu;
Folsom, Jing J.;
Zhen Wang;
Chi Zhang;
Walia, Harkamal

Publication type:

Article

Integrating Image-Based Phenomics and Association Analysis to Dissect the Genetic Architecture of Temporal Salinity Responses in Rice.

Published in:

Plant Physiology, 2015, v. 168, n. 4, p. 1476, doi. 10.1104/pp.15.00450

By:

Campbell, Malachy T.;
Knecht, Avi C.;
Berger, Bettina;
Brien, Chris J.;
Dong Wang;
Walia, Harkamal

Publication type:

Article

Rice Fertilization-Independent Endosperm1 Regulates Seed Size under Heat Stress by Controlling Early Endosperm Development.

Published in:

Plant Physiology, 2014, v. 165, n. 1, p. 238, doi. 10.1104/pp.113.232413

By:

Folsom, Jing J.;
Begcy, Kevin;
Xiaojuan Hao;
Dong Wang;
Walia, Harkamal

Publication type:

Article

Introgression of Novel Traits from a Wild Wheat Relative Improves Drought Adaptation in Wheat.

Published in:

Plant Physiology, 2013, v. 161, n. 4, p. 1806, doi. 10.1104/pp.113.214262

By:

Placido, Dante F.;
Campbell, Malachy T.;
Folsom, Jing J.;
Xinping Cui;
Kruger, Greg R.;
Baenziger, P. Stephen;
Walia, Harkamal

Publication type:

Article

The Submergence Tolerance Regulator Sub1A Mediates Stress-Responsive Expression of AP2/ERF Transcription Factors.

Published in:

Plant Physiology, 2010, v. 152, n. 3, p. 1674, doi. 10.1104/pp.109.152157

By:

Ki-Hong Jung;
Young-Su Seo;
Walia, Harkamal;
Cao, Peijian;
Fukao, Takeshi;
Canlas, Patrick E.;
Amonpant, Fawn;
Bailey-Serres, Julia;
Ronald, Pamela C.

Publication type:

Article

PI-Plat: a high-resolution image-based 3D reconstruction method to estimate growth dynamics of rice inflorescence traits.

Published in:

Plant Methods, 2019, v. 15, n. 1, p. 1, doi. 10.1186/s13007-019-0545-2

By:

Sandhu, Jaspreet;
Zhu, Feiyu;
Paul, Puneet;
Gao, Tian;
Dhatt, Balpreet K.;
Ge, Yufeng;
Staswick, Paul;
Yu, Hongfeng;
Walia, Harkamal

Publication type:

Article