Found: 20

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  • Genomic insights into the Ixodes scapularis tick vector of Lyme disease.

    Published in:
    Nature Communications, 2016, v. 7, n. 2, p. 10507, doi. 10.1038/ncomms10507
    By:
    • Gulia-Nuss, Monika;
    • Nuss, Andrew B.;
    • Meyer, Jason M.;
    • Sonenshine, Daniel E.;
    • Roe, R. Michael;
    • Waterhouse, Robert M.;
    • Sattelle, David B.;
    • de la Fuente, José;
    • Ribeiro, Jose M.;
    • Megy, Karine;
    • Thimmapuram, Jyothi;
    • Miller, Jason R.;
    • Walenz, Brian P.;
    • Koren, Sergey;
    • Hostetler, Jessica B.;
    • Thiagarajan, Mathangi;
    • Joardar, Vinita S.;
    • Hannick, Linda I.;
    • Bidwell, Shelby;
    • Hammond, Martin P.
    Publication type:
    Article

  • Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies.

    Published in:
    Genome Biology, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s13059-020-02134-9
    By:
    • Rhie, Arang;
    • Walenz, Brian P.;
    • Koren, Sergey;
    • Phillippy, Adam M.
    Publication type:
    Article

  • An algorithm for automated closure during assembly.

    Published in:
    BMC Bioinformatics, 2010, v. 11, p. 457, doi. 10.1186/1471-2105-11-457
    By:
    • Koren, Sergey;
    • Miller, Jason R.;
    • Walenz, Brian P.;
    • Sutton, Granger
    Publication type:
    Article

  • Improved reference genome for the domestic horse increases assembly contiguity and composition.

    Published in:
    Communications Biology, 2018, v. 1, n. 1, p. N.PAG, doi. 10.1038/s42003-018-0199-z
    By:
    • Kalbfleisch, Theodore S.;
    • Rice, Edward S.;
    • DePriest, Michael S.;
    • Walenz, Brian P.;
    • Hestand, Matthew S.;
    • Vermeesch, Joris R.;
    • O′Connell, Brendan L.;
    • Fiddes, Ian T.;
    • Vershinina, Alisa O.;
    • Saremi, Nedda F.;
    • Petersen, Jessica L.;
    • Finno, Carrie J.;
    • Bellone, Rebecca R.;
    • McCue, Molly E.;
    • Brooks, Samantha A.;
    • Bailey, Ernest;
    • Orlando, Ludovic;
    • Green, Richard E.;
    • Miller, Donald C.;
    • Antczak, Douglas F.
    Publication type:
    Article

  • Improved reference genome for the domestic horse increases assembly contiguity and composition.

    Published in:
    Communications Biology, 2018, v. 1, n. 1, p. N.PAG, doi. 10.1038/s42003-018-0199-z
    By:
    • Kalbfleisch, Theodore S.;
    • Rice, Edward S.;
    • DePriest, Michael S.;
    • Walenz, Brian P.;
    • Hestand, Matthew S.;
    • Vermeesch, Joris R.;
    • O′Connell, Brendan L.;
    • Fiddes, Ian T.;
    • Vershinina, Alisa O.;
    • Saremi, Nedda F.;
    • Petersen, Jessica L.;
    • Finno, Carrie J.;
    • Bellone, Rebecca R.;
    • McCue, Molly E.;
    • Brooks, Samantha A.;
    • Bailey, Ernest;
    • Orlando, Ludovic;
    • Green, Richard E.;
    • Miller, Donald C.;
    • Antczak, Douglas F.
    Publication type:
    Article

  • An improved genome assembly uncovers prolific tandem repeats in Atlantic cod.

    Published in:
    BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-016-3448-x
    By:
    • TØrresen, Ole K.;
    • Star, Bastiaan;
    • Jentoft, Sissel;
    • Reinar, William B.;
    • Grove, Harald;
    • Miller, Jason R.;
    • Walenz, Brian P.;
    • Knight, James;
    • Ekholm, Jenny M.;
    • Peluso, Paul;
    • Edvardsen, Rolf B.;
    • Tooming-Klunderud, Ave;
    • Skage, Morten;
    • Lien, Sigbjࡵrn;
    • Jakobsen, Kjetill S.;
    • Nederbragt, Alexander J.
    Publication type:
    Article

  • Genetic Variation in an Individual Human Exome.

    Published in:
    PLoS Genetics, 2008, v. 4, n. 8, p. 1, doi. 10.1371/journal.pgen.1000160
    By:
    • Ng, Pauline C.;
    • Levy, Samuel;
    • Jiaqi Huang;
    • Stockwell, Timothy B.;
    • Walenz, Brian P.;
    • Kelvin Li;
    • Axelrod, Nelson;
    • Busam, Dana A.;
    • Strausberg, Robert L.;
    • Venter, J. Craig
    Publication type:
    Article

  • Nanoliter Reactors Improve Multiple Displacement Amplification of Genomes from Single Cells.

    Published in:
    PLoS Genetics, 2007, v. 3, n. 9, p. 1702, doi. 10.1371/journal.pgen.0030155
    By:
    • Marcy, Yann;
    • Ishoey, Thomas;
    • Lasken, Roger S.;
    • Stockwell, Timothy B.;
    • Walenz, Brian P.;
    • Halpern, Aaron L.;
    • Beeson, Karen Y.;
    • Goldberg, Susanne M. D.;
    • Quake, Stephen R.
    Publication type:
    Article

  • Hybrid error correction and de novo assembly of single-molecule sequencing reads.

    Published in:
    Nature Biotechnology, 2012, v. 30, n. 7, p. 693, doi. 10.1038/nbt.2280
    By:
    • Koren, Sergey;
    • Schatz, Michael C;
    • Walenz, Brian P;
    • Martin, Jeffrey;
    • Howard, Jason T;
    • Ganapathy, Ganeshkumar;
    • Wang, Zhong;
    • Rasko, David A;
    • McCombie, W Richard;
    • Jarvis, Erich D;
    • Phillippy, Adam M
    Publication type:
    Article

  • Weighted minimizer sampling improves long read mapping.

    Published in:
    Bioinformatics, 2020, v. 36, p. i111, doi. 10.1093/bioinformatics/btaa435
    By:
    • Jain, Chirag;
    • Rhie, Arang;
    • Zhang, Haowen;
    • Chu, Claudia;
    • Walenz, Brian P;
    • Koren, Sergey;
    • Phillippy, Adam M
    Publication type:
    Article

  • The Diploid Genome Sequence of an Individual Human.

    Published in:
    PLoS Biology, 2007, v. 5, n. 10, p. e254, doi. 10.1371/journal.pbio.0050254
    By:
    • Levy, Samuel;
    • Sutton, Granger;
    • Ng, Pauline C.;
    • Feuk, Lars;
    • Halpern, Aaron L.;
    • Walenz, Brian P.;
    • Axelrod, Nelson;
    • Jiaqi Huang;
    • Kirkness, Ewen F.;
    • Denisov, Gennady;
    • Yuan Lin;
    • MacDonald, Jeffrey R.;
    • Andy Wing Chun Pang;
    • Shago, Mary;
    • Stockwell, Timothy B.;
    • Tsiamouri, Alexia;
    • Bafna, Vineet;
    • Bansal, Vikas;
    • Kravitz, Saul A.;
    • Busam, Dana A.
    Publication type:
    Article

  • Hybrid assembly with long and short reads improves discovery of gene family expansions.

    Published in:
    BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3927-8
    By:
    • Miller, Jason R.;
    • Peng Zhou;
    • Mudge, Joann;
    • Gurtowski, James;
    • Hayan Lee;
    • Ramaraj, Thiruvarangan;
    • Walenz, Brian P.;
    • Junqi Liu;
    • Stupar, Robert M.;
    • Denny, Roxanne;
    • Li Song;
    • Singh, Namrata;
    • Maron, Lyza G.;
    • McCouch, Susan R.;
    • McCombie, W. Richard;
    • Schatz, Michael C.;
    • Tiffin, Peter;
    • Young, Nevin D.;
    • Silverstein, Kevin A. T.
    Publication type:
    Article

  • The genomic structure of a human chromosome 22 nucleolar organizer region determined by TAR cloning.

    Published in:
    Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-82565-x
    By:
    • Kim, Jung-Hyun;
    • Noskov, Vladimir N.;
    • Ogurtsov, Aleksey Y.;
    • Nagaraja, Ramaiah;
    • Petrov, Nikolai;
    • Liskovykh, Mikhail;
    • Walenz, Brian P.;
    • Lee, Hee-Sheung;
    • Kouprina, Natalay;
    • Phillippy, Adam M.;
    • Shabalina, Svetlana A.;
    • Schlessinger, David;
    • Larionov, Vladimir
    Publication type:
    Article

  • The Genome of Anopheles darlingi, the main neotropical malaria vector.

    Published in:
    Nucleic Acids Research, 2013, v. 41, n. 15, p. 7387, doi. 10.1093/nar/gkt484
    By:
    • Marinotti, Osvaldo;
    • Cerqueira, Gustavo C.;
    • de Almeida, Luiz Gonzaga Paula;
    • Ferro, Maria Inês Tiraboschi;
    • Loreto, Elgion Lucio da Silva;
    • Zaha, Arnaldo;
    • Teixeira, Santuza M. R.;
    • Wespiser, Adam R.;
    • Almeida e Silva, Alexandre;
    • Schlindwein, Aline Daiane;
    • Pacheco, Ana Carolina Landim;
    • Silva, Artur Luiz da Costa da;
    • Graveley, Brenton R.;
    • Walenz, Brian P.;
    • Lima, Bruna de Araujo;
    • Ribeiro, Carlos Alexandre Gomes;
    • Nunes-Silva, Carlos Gustavo;
    • de Carvalho, Carlos Roberto;
    • Soares, Célia Maria de Almeida;
    • de Menezes, Claudia Beatriz Afonso
    Publication type:
    Article

  • Aggressive assembly of pyrosequencing reads with mates.

    Published in:
    Bioinformatics, 2008, v. 24, n. 24, p. 2818, doi. 10.1093/bioinformatics/btn548
    By:
    • Jason R. Miller;
    • Arthur L. Delcher;
    • Sergey Koren;
    • Eli Venter;
    • Brian P. Walenz;
    • Anushka Brownley;
    • Justin Johnson;
    • Kelvin Li;
    • Clark Mobarry;
    • Granger Sutton
    Publication type:
    Article

  • Author Correction: Improved reference genome for the domestic horse increases assembly contiguity and composition.

    Published in:
    2019
    By:
    • Kalbfleisch, Theodore S.;
    • Rice, Edward S.;
    • DePriest, Michael S.;
    • Walenz, Brian P.;
    • Hestand, Matthew S.;
    • Vermeesch, Joris R.;
    • O'Connell, Brendan L.;
    • Fiddes, Ian T.;
    • Vershinina, Alisa O.;
    • Saremi, Nedda F.;
    • Petersen, Jessica L.;
    • Finno, Carrie J.;
    • Bellone, Rebecca R.;
    • McCue, Molly E.;
    • Brooks, Samantha A.;
    • Bailey, Ernest;
    • Orlando, Ludovic;
    • Green, Richard E.;
    • Miller, Donald C.;
    • Antczak, Douglas F.
    Publication type:
    Correction Notice

  • Effect of sequence depth and length in long-read assembly of the maize inbred NC358.

    Published in:
    Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16037-7
    By:
    • Ou, Shujun;
    • Liu, Jianing;
    • Chougule, Kapeel M.;
    • Fungtammasan, Arkarachai;
    • Seetharam, Arun S.;
    • Stein, Joshua C.;
    • Llaca, Victor;
    • Manchanda, Nancy;
    • Gilbert, Amanda M.;
    • Wei, Sharon;
    • Chin, Chen-Shan;
    • Hufnagel, David E.;
    • Pedersen, Sarah;
    • Snodgrass, Samantha J.;
    • Fengler, Kevin;
    • Woodhouse, Margaret;
    • Walenz, Brian P.;
    • Koren, Sergey;
    • Phillippy, Adam M.;
    • Hannigan, Brett T.
    Publication type:
    Article

  • Integrating Hi-C links with assembly graphs for chromosome-scale assembly.

    Published in:
    PLoS Computational Biology, 2019, v. 15, n. 8, p. 1, doi. 10.1371/journal.pcbi.1007273
    By:
    • Ghurye, Jay;
    • Rhie, Arang;
    • Walenz, Brian P.;
    • Schmitt, Anthony;
    • Selvaraj, Siddarth;
    • Pop, Mihai;
    • Phillippy, Adam M.;
    • Koren, Sergey
    Publication type:
    Article

  • Telomere-to-telomere assembly of diploid chromosomes with Verkko.

    Published in:
    Nature Biotechnology, 2023, v. 41, n. 10, p. 1474, doi. 10.1038/s41587-023-01662-6
    By:
    • Rautiainen, Mikko;
    • Nurk, Sergey;
    • Walenz, Brian P.;
    • Logsdon, Glennis A.;
    • Porubsky, David;
    • Rhie, Arang;
    • Eichler, Evan E.;
    • Phillippy, Adam M.;
    • Koren, Sergey
    Publication type:
    Article

  • De novo assembly of haplotype-resolved genomes with trio binning.

    Published in:
    Nature Biotechnology, 2018, v. 36, n. 12, p. 1174, doi. 10.1038/nbt.4277
    By:
    • Koren, Sergey;
    • Rhie, Arang;
    • Walenz, Brian P;
    • Dilthey, Alexander T;
    • Bickhart, Derek M;
    • Kingan, Sarah B;
    • Hiendleder, Stefan;
    • Williams, John L;
    • Smith, Timothy P L;
    • Phillippy, Adam M
    Publication type:
    Article