Works matching AU Walenz, Brian P.

Results: 20

Aggressive assembly of pyrosequencing reads with mates.

Published in:

Bioinformatics, 2008, v. 24, n. 24, p. 2818, doi. 10.1093/bioinformatics/btn548

By:

Jason R. Miller;
Arthur L. Delcher;
Sergey Koren;
Eli Venter;
Brian P. Walenz;
Anushka Brownley;
Justin Johnson;
Kelvin Li;
Clark Mobarry;
Granger Sutton

Publication type:

Article

Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies.

Published in:

Genome Biology, 2020, v. 21, n. 1, p. N.PAG, doi. 10.1186/s13059-020-02134-9

By:

Rhie, Arang;
Walenz, Brian P.;
Koren, Sergey;
Phillippy, Adam M.

Publication type:

Article

Author Correction: Improved reference genome for the domestic horse increases assembly contiguity and composition.

Published in:

2019

By:

Kalbfleisch, Theodore S.;
Rice, Edward S.;
DePriest, Michael S.;
Walenz, Brian P.;
Hestand, Matthew S.;
Vermeesch, Joris R.;
O'Connell, Brendan L.;
Fiddes, Ian T.;
Vershinina, Alisa O.;
Saremi, Nedda F.;
Petersen, Jessica L.;
Finno, Carrie J.;
Bellone, Rebecca R.;
McCue, Molly E.;
Brooks, Samantha A.;
Bailey, Ernest;
Orlando, Ludovic;
Green, Richard E.;
Miller, Donald C.;
Antczak, Douglas F.

Publication type:

Correction Notice

Improved reference genome for the domestic horse increases assembly contiguity and composition.

Published in:

Communications Biology, 2018, v. 1, n. 1, p. N.PAG, doi. 10.1038/s42003-018-0199-z

By:

Kalbfleisch, Theodore S.;
Rice, Edward S.;
DePriest, Michael S.;
Walenz, Brian P.;
Hestand, Matthew S.;
Vermeesch, Joris R.;
O′Connell, Brendan L.;
Fiddes, Ian T.;
Vershinina, Alisa O.;
Saremi, Nedda F.;
Petersen, Jessica L.;
Finno, Carrie J.;
Bellone, Rebecca R.;
McCue, Molly E.;
Brooks, Samantha A.;
Bailey, Ernest;
Orlando, Ludovic;
Green, Richard E.;
Miller, Donald C.;
Antczak, Douglas F.

Publication type:

Article

Improved reference genome for the domestic horse increases assembly contiguity and composition.

Published in:

Communications Biology, 2018, v. 1, n. 1, p. N.PAG, doi. 10.1038/s42003-018-0199-z

By:

Kalbfleisch, Theodore S.;
Rice, Edward S.;
DePriest, Michael S.;
Walenz, Brian P.;
Hestand, Matthew S.;
Vermeesch, Joris R.;
O′Connell, Brendan L.;
Fiddes, Ian T.;
Vershinina, Alisa O.;
Saremi, Nedda F.;
Petersen, Jessica L.;
Finno, Carrie J.;
Bellone, Rebecca R.;
McCue, Molly E.;
Brooks, Samantha A.;
Bailey, Ernest;
Orlando, Ludovic;
Green, Richard E.;
Miller, Donald C.;
Antczak, Douglas F.

Publication type:

Article

The Diploid Genome Sequence of an Individual Human.

Published in:

PLoS Biology, 2007, v. 5, n. 10, p. e254, doi. 10.1371/journal.pbio.0050254

By:

Levy, Samuel;
Sutton, Granger;
Ng, Pauline C.;
Feuk, Lars;
Halpern, Aaron L.;
Walenz, Brian P.;
Axelrod, Nelson;
Jiaqi Huang;
Kirkness, Ewen F.;
Denisov, Gennady;
Yuan Lin;
MacDonald, Jeffrey R.;
Andy Wing Chun Pang;
Shago, Mary;
Stockwell, Timothy B.;
Tsiamouri, Alexia;
Bafna, Vineet;
Bansal, Vikas;
Kravitz, Saul A.;
Busam, Dana A.

Publication type:

Article

The genomic structure of a human chromosome 22 nucleolar organizer region determined by TAR cloning.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-82565-x

By:

Kim, Jung-Hyun;
Noskov, Vladimir N.;
Ogurtsov, Aleksey Y.;
Nagaraja, Ramaiah;
Petrov, Nikolai;
Liskovykh, Mikhail;
Walenz, Brian P.;
Lee, Hee-Sheung;
Kouprina, Natalay;
Phillippy, Adam M.;
Shabalina, Svetlana A.;
Schlessinger, David;
Larionov, Vladimir

Publication type:

Article

Effect of sequence depth and length in long-read assembly of the maize inbred NC358.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-16037-7

By:

Ou, Shujun;
Liu, Jianing;
Chougule, Kapeel M.;
Fungtammasan, Arkarachai;
Seetharam, Arun S.;
Stein, Joshua C.;
Llaca, Victor;
Manchanda, Nancy;
Gilbert, Amanda M.;
Wei, Sharon;
Chin, Chen-Shan;
Hufnagel, David E.;
Pedersen, Sarah;
Snodgrass, Samantha J.;
Fengler, Kevin;
Woodhouse, Margaret;
Walenz, Brian P.;
Koren, Sergey;
Phillippy, Adam M.;
Hannigan, Brett T.

Publication type:

Article

Genomic insights into the Ixodes scapularis tick vector of Lyme disease.

Published in:

Nature Communications, 2016, v. 7, n. 2, p. 10507, doi. 10.1038/ncomms10507

By:

Gulia-Nuss, Monika;
Nuss, Andrew B.;
Meyer, Jason M.;
Sonenshine, Daniel E.;
Roe, R. Michael;
Waterhouse, Robert M.;
Sattelle, David B.;
de la Fuente, José;
Ribeiro, Jose M.;
Megy, Karine;
Thimmapuram, Jyothi;
Miller, Jason R.;
Walenz, Brian P.;
Koren, Sergey;
Hostetler, Jessica B.;
Thiagarajan, Mathangi;
Joardar, Vinita S.;
Hannick, Linda I.;
Bidwell, Shelby;
Hammond, Martin P.

Publication type:

Article

An algorithm for automated closure during assembly.

Published in:

BMC Bioinformatics, 2010, v. 11, p. 457, doi. 10.1186/1471-2105-11-457

By:

Koren, Sergey;
Miller, Jason R.;
Walenz, Brian P.;
Sutton, Granger

Publication type:

Article

Integrating Hi-C links with assembly graphs for chromosome-scale assembly.

Published in:

PLoS Computational Biology, 2019, v. 15, n. 8, p. 1, doi. 10.1371/journal.pcbi.1007273

By:

Ghurye, Jay;
Rhie, Arang;
Walenz, Brian P.;
Schmitt, Anthony;
Selvaraj, Siddarth;
Pop, Mihai;
Phillippy, Adam M.;
Koren, Sergey

Publication type:

Article

Weighted minimizer sampling improves long read mapping.

Published in:

Bioinformatics, 2020, v. 36, p. i111, doi. 10.1093/bioinformatics/btaa435

By:

Jain, Chirag;
Rhie, Arang;
Zhang, Haowen;
Chu, Claudia;
Walenz, Brian P;
Koren, Sergey;
Phillippy, Adam M

Publication type:

Article

The Genome of Anopheles darlingi, the main neotropical malaria vector.

Published in:

Nucleic Acids Research, 2013, v. 41, n. 15, p. 7387, doi. 10.1093/nar/gkt484

By:

Marinotti, Osvaldo;
Cerqueira, Gustavo C.;
de Almeida, Luiz Gonzaga Paula;
Ferro, Maria Inês Tiraboschi;
Loreto, Elgion Lucio da Silva;
Zaha, Arnaldo;
Teixeira, Santuza M. R.;
Wespiser, Adam R.;
Almeida e Silva, Alexandre;
Schlindwein, Aline Daiane;
Pacheco, Ana Carolina Landim;
Silva, Artur Luiz da Costa da;
Graveley, Brenton R.;
Walenz, Brian P.;
Lima, Bruna de Araujo;
Ribeiro, Carlos Alexandre Gomes;
Nunes-Silva, Carlos Gustavo;
de Carvalho, Carlos Roberto;
Soares, Célia Maria de Almeida;
de Menezes, Claudia Beatriz Afonso

Publication type:

Article

Telomere-to-telomere assembly of diploid chromosomes with Verkko.

Published in:

Nature Biotechnology, 2023, v. 41, n. 10, p. 1474, doi. 10.1038/s41587-023-01662-6

By:

Rautiainen, Mikko;
Nurk, Sergey;
Walenz, Brian P.;
Logsdon, Glennis A.;
Porubsky, David;
Rhie, Arang;
Eichler, Evan E.;
Phillippy, Adam M.;
Koren, Sergey

Publication type:

Article

De novo assembly of haplotype-resolved genomes with trio binning.

Published in:

Nature Biotechnology, 2018, v. 36, n. 12, p. 1174, doi. 10.1038/nbt.4277

By:

Koren, Sergey;
Rhie, Arang;
Walenz, Brian P;
Dilthey, Alexander T;
Bickhart, Derek M;
Kingan, Sarah B;
Hiendleder, Stefan;
Williams, John L;
Smith, Timothy P L;
Phillippy, Adam M

Publication type:

Article

Hybrid error correction and de novo assembly of single-molecule sequencing reads.

Published in:

Nature Biotechnology, 2012, v. 30, n. 7, p. 693, doi. 10.1038/nbt.2280

By:

Koren, Sergey;
Schatz, Michael C;
Walenz, Brian P;
Martin, Jeffrey;
Howard, Jason T;
Ganapathy, Ganeshkumar;
Wang, Zhong;
Rasko, David A;
McCombie, W Richard;
Jarvis, Erich D;
Phillippy, Adam M

Publication type:

Article

Hybrid assembly with long and short reads improves discovery of gene family expansions.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3927-8

By:

Miller, Jason R.;
Peng Zhou;
Mudge, Joann;
Gurtowski, James;
Hayan Lee;
Ramaraj, Thiruvarangan;
Walenz, Brian P.;
Junqi Liu;
Stupar, Robert M.;
Denny, Roxanne;
Li Song;
Singh, Namrata;
Maron, Lyza G.;
McCouch, Susan R.;
McCombie, W. Richard;
Schatz, Michael C.;
Tiffin, Peter;
Young, Nevin D.;
Silverstein, Kevin A. T.

Publication type:

Article

An improved genome assembly uncovers prolific tandem repeats in Atlantic cod.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-016-3448-x

By:

TØrresen, Ole K.;
Star, Bastiaan;
Jentoft, Sissel;
Reinar, William B.;
Grove, Harald;
Miller, Jason R.;
Walenz, Brian P.;
Knight, James;
Ekholm, Jenny M.;
Peluso, Paul;
Edvardsen, Rolf B.;
Tooming-Klunderud, Ave;
Skage, Morten;
Lien, Sigbjࡵrn;
Jakobsen, Kjetill S.;
Nederbragt, Alexander J.

Publication type:

Article

Genetic Variation in an Individual Human Exome.

Published in:

PLoS Genetics, 2008, v. 4, n. 8, p. 1, doi. 10.1371/journal.pgen.1000160

By:

Ng, Pauline C.;
Levy, Samuel;
Jiaqi Huang;
Stockwell, Timothy B.;
Walenz, Brian P.;
Kelvin Li;
Axelrod, Nelson;
Busam, Dana A.;
Strausberg, Robert L.;
Venter, J. Craig

Publication type:

Article

Nanoliter Reactors Improve Multiple Displacement Amplification of Genomes from Single Cells.

Published in:

PLoS Genetics, 2007, v. 3, n. 9, p. 1702, doi. 10.1371/journal.pgen.0030155

By:

Marcy, Yann;
Ishoey, Thomas;
Lasken, Roger S.;
Stockwell, Timothy B.;
Walenz, Brian P.;
Halpern, Aaron L.;
Beeson, Karen Y.;
Goldberg, Susanne M. D.;
Quake, Stephen R.

Publication type:

Article