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The Histidine Decarboxylase Gene Cluster of Lactobacillus parabuchneri Was Gained by Horizontal Gene Transfer and Is Mobile within the Species.
Published in:
Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00218
By:
- Wüthrich, Daniel;
- Berthoud, Hélène;
- Wechsler, Daniel;
- Eugster, Elisabeth;
- Irmler, Stefan;
- Bruggmann, Rémy
Publication type:
Article
Indication of Cross-Species Transmission of Astrovirus Associated with Encephalitis in Sheep and Cattle.
Published in:
2017
By:
- Boujon, Céline L.;
- Koch, Michel C.;
- Wüthrich, Daniel;
- Werder, Simea;
- Jakupovic, Dennis;
- Bruggmann, Rémy;
- Seuberlich, Torsten
Publication type:
journal article
Air-conditioner cooling towers as complex reservoirs and continuous source of Legionella pneumophila infection evidenced by a genomic analysis study in 2017, Switzerland.
Published in:
Eurosurveillance (15607917), 2019, v. 24, n. 4, p. 65, doi. 10.2807/1560-7917.ES.2019.24.4.1800192
By:
- Wüthrich, Daniel;
- Gautsch, Sylvia;
- Spieler-Denz, Ruth;
- Dubuis, Olivier;
- Gaia, Valeria;
- Moran-Gilad, Jacob;
- Hinic, Vladimira;
- Seth-Smith, Helena M. B.;
- Nickel, Christian H.;
- Tschudin-Sutter, Sarah;
- Bassetti, Stefano;
- Haenggi, Monika;
- Brodmann, Peter;
- Fuchs, Simon;
- Egli, Adrian
Publication type:
Article
Whole-genome sequence-informed MALDI-TOF MS diagnostics reveal importance of Klebsiella oxytoca group in invasive infections: a retrospective clinical study.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00960-5
By:
- Cuénod, Aline;
- Wüthrich, Daniel;
- Seth-Smith, Helena M. B.;
- Ott, Chantal;
- Gehringer, Christian;
- Foucault, Frédéric;
- Mouchet, Roxanne;
- Kassim, Ali;
- Revathi, Gunturu;
- Vogt, Deborah R.;
- von Felten, Stefanie;
- Bassetti, Stefano;
- Tschudin-Sutter, Sarah;
- Hettich, Timm;
- Schlotterbeck, Götz;
- Homberger, Christina;
- Casanova, Carlo;
- Moran-Gilad, Jacob;
- Sagi, Orli;
- Rodríguez-Sánchez, Belén
Publication type:
Article
Publisher Correction: Engineering bacterial symbionts of nematodes improves their biocontrol potential to counter the western corn rootworm.
Published in:
2020
By:
- Machado, Ricardo A. R.;
- Thönen, Lisa;
- Arce, Carla C. M.;
- Theepan, Vanitha;
- Prada, Fausto;
- Wüthrich, Daniel;
- Robert, Christelle A. M.;
- Vogiatzaki, Evangelia;
- Shi, Yi-Ming;
- Schaeren, Olivier P.;
- Notter, Matheus;
- Bruggmann, Rémy;
- Hapfelmeier, Siegfried;
- Bode, Helge B.;
- Erb, Matthias
Publication type:
Correction Notice
Engineering bacterial symbionts of nematodes improves their biocontrol potential to counter the western corn rootworm.
Published in:
Nature Biotechnology, 2020, v. 38, n. 5, p. 600, doi. 10.1038/s41587-020-0419-1
By:
- Machado, Ricardo A. R.;
- Thönen, Lisa;
- Arce, Carla C. M.;
- Theepan, Vanitha;
- Prada, Fausto;
- Wüthrich, Daniel;
- Robert, Christelle A. M.;
- Vogiatzaki, Evangelia;
- Shi, Yi-Ming;
- Schaeren, Olivier P.;
- Notter, Matheus;
- Bruggmann, Rémy;
- Hapfelmeier, Siegfried;
- Bode, Helge B.;
- Erb, Matthias
Publication type:
Article
Prosthetic valve endocarditis caused by Pseudomonas aeruginosa with variable antibacterial resistance profiles: a diagnostic challenge.
Published in:
2019
By:
- Gürtler, Nicolas;
- Osthoff, Michael;
- Rueter, Florian;
- Wüthrich, Daniel;
- Zimmerli, Lukas;
- Egli, Adrian;
- Bassetti, Stefano
Publication type:
journal article
In Silico Comparison Shows that the Pan-Genome of a Dairy-Related Bacterial Culture Collection Covers Most Reactions Annotated to Human Microbiomes.
Published in:
Microorganisms, 2020, v. 8, n. 7, p. 966, doi. 10.3390/microorganisms8070966
By:
- Roder, Thomas;
- Wüthrich, Daniel;
- Bär, Cornelia;
- Sattari, Zahra;
- von Ah, Ueli;
- Ronchi, Francesca;
- Macpherson, Andrew J.;
- Ganal-Vonarburg, Stephanie C.;
- Bruggmann, Rémy;
- Vergères, Guy
Publication type:
Article
Gene expression in chronic granulomatous disease and interferon‐γ receptor‐deficient cells treated in vitro with interferon‐γ.
Published in:
Journal of Cellular Biochemistry, 2019, v. 120, n. 3, p. 4321, doi. 10.1002/jcb.27718
By:
- Frazão, Josias B.;
- Colombo, Martino;
- Simillion, Cedric;
- Bilican, Adem;
- Keller, Irene;
- Wüthrich, Daniel;
- Zhu, Zhiqing;
- Okoniewski, Michal J.;
- Bruggmann, Rémy;
- Condino‐Neto, Antonio;
- Newburger, Peter E.
Publication type:
Article
Global Phylogenomic Analysis of Nonencapsulated Streptococcus pneumoniae Reveals a Deep-Branching Classic Lineage That Is Distinct from Multiple Sporadic Lineages.
Published in:
Genome Biology & Evolution, 2014, v. 6, n. 12, p. 3281, doi. 10.1093/gbe/evu263
By:
- Hilty, Markus;
- Wüthrich, Daniel;
- Salter, Susannah J.;
- Engel, Hansjürg;
- Campbell, Samuel;
- Sá-Leão, Raquel;
- de Lencastre, Hermínia;
- Hermans, Peter;
- Sadowy, Ewa;
- Turner, Paul;
- Chewapreecha, Claire;
- Diggle, Mathew;
- Pluschke, Gerd;
- McGee, Lesley;
- Eser, Özgen Köseoğlu;
- Low, Donald E.;
- Smith-Vaughan, Heidi;
- Endimiani, Andrea;
- Küffer, Marianne;
- Dupasquier, Mélanie
Publication type:
Article
A Novel Lineage of Ceftriaxone-resistant Salmonella Typhi From India That Is Closely Related to XDR S. Typhi Found in Pakistan.
Published in:
Clinical Infectious Diseases, 2020, v. 71, n. 5, p. 1327, doi. 10.1093/cid/ciz1204
By:
- Sah, Ranjit;
- Donovan, Suzanne;
- Seth-Smith, Helena M B;
- Bloemberg, Guido;
- Wüthrich, Daniel;
- Stephan, Roger;
- Kataria, Sushila;
- Kumar, Mahadevan;
- Singla, Sonam;
- Deswal, Vikas;
- Kaur, Amarjeet;
- Neumayr, Andreas;
- Hinic, Vladimira;
- Egli, Adrian;
- Kuenzli, Esther
Publication type:
Article
Conversion of Methionine to Cysteine in Lactobacillus paracasei Depends on the Highly Mobile cysK-ctl-cysE Gene Cluster.
Published in:
Frontiers in Microbiology, 2018, p. N.PAG, doi. 10.3389/fmicb.2018.02415
By:
- Wüthrich, Daniel;
- Irmler, Stefan;
- Berthoud, Hélène;
- Guggenbühl, Barbara;
- Eugster, Elisabeth;
- Bruggmann, Rémy
Publication type:
Article
Amplicon Sequencing of the slpH Locus Permits Culture-Independent Strain Typing of Lactobacillus helveticus in Dairy Products.
Published in:
Frontiers in Microbiology, 2017, p. 1, doi. 10.3389/fmicb.2017.01380
By:
- Moser, Aline;
- Wüthrich, Daniel;
- Bruggmann, Rémy;
- Eugster-Meier, Elisabeth;
- Meile, Leo;
- Irmler, Stefan
Publication type:
Article
Rapid and Ultrasensitive Detection of Mutations and Genes Relevant to Antimicrobial Resistance in Bacteria.
Published in:
Global Challenges, 2021, v. 5, n. 2, p. 1, doi. 10.1002/gch2.202000066
By:
- Huber, François;
- Lang, Hans Peter;
- Lang, Daniela;
- Wüthrich, Daniel;
- Hinić, Vladimira;
- Gerber, Christoph;
- Egli, Adrian;
- Meyer, Ernst
Publication type:
Article
NGS-Based S. aureus Typing and Outbreak Analysis in Clinical Microbiology Laboratories: Lessons Learned From a Swiss-Wide Proficiency Test.
Published in:
Frontiers in Microbiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fmicb.2020.591093
By:
- Dylus, David;
- Pillonel, Trestan;
- Opota, Onya;
- Wüthrich, Daniel;
- Seth-Smith, Helena M. B.;
- Egli, Adrian;
- Leo, Stefano;
- Lazarevic, Vladimir;
- Schrenzel, Jacques;
- Laurent, Sacha;
- Bertelli, Claire;
- Blanc, Dominique S.;
- Neuenschwander, Stefan;
- Ramette, Alban;
- Falquet, Laurent;
- Imkamp, Frank;
- Keller, Peter M.;
- Kahles, Andre;
- Oberhaensli, Simone;
- Barbié, Valérie
Publication type:
Article
Characterising the epidemic spread of influenza A/H3N2 within a city through phylogenetics.
Published in:
PLoS Pathogens, 2020, v. 16, n. 11, p. 1, doi. 10.1371/journal.ppat.1008984
By:
- Müller, Nicola F.;
- Wüthrich, Daniel;
- Goldman, Nina;
- Sailer, Nadine;
- Saalfrank, Claudia;
- Brunner, Myrta;
- Augustin, Noémi;
- Seth-Smith, Helena MB;
- Hollenstein, Yvonne;
- Syedbasha, Mohammedyaseen;
- Lang, Daniela;
- Neher, Richard A.;
- Dubuis, Olivier;
- Naegele, Michael;
- Buser, Andreas;
- Nickel, Christian H.;
- Ritz, Nicole;
- Zeller, Andreas;
- Lang, Brian M.;
- Hadfield, James
Publication type:
Article
Genomic characterization of inpatient evolution of MRSA resistant to daptomycin, vancomycin and ceftaroline.
Published in:
2019
By:
- Wüthrich, Daniel;
- Cuénod, Aline;
- Hinic, Vladimira;
- Morgenstern, Mario;
- Khanna, Nina;
- Egli, Adrian;
- Kuehl, Richard
Publication type:
Letter
A structural variant in the 5’-flanking region of the TWIST2 gene affects melanocyte development in belted cattle.
Published in:
PLoS ONE, 2017, v. 12, n. 6, p. 1, doi. 10.1371/journal.pone.0180170
By:
- Awasthi Mishra, Nivedita;
- Drögemüller, Cord;
- Jagannathan, Vidhya;
- Keller, Irene;
- Wüthrich, Daniel;
- Bruggmann, Rémy;
- Beck, Julia;
- Schütz, Ekkehard;
- Brenig, Bertram;
- Demmel, Steffi;
- Moser, Simon;
- Signer-Hasler, Heidi;
- Pieńkowska-Schelling, Aldona;
- Schelling, Claude;
- Sande, Marcos;
- Rongen, Ronald;
- Rieder, Stefan;
- Kelsh, Robert N.;
- Mercader, Nadia;
- Leeb, Tosso
Publication type:
Article
A point mutation in cpsE renders Streptococcus pneumoniae nonencapsulated and enhances its growth, adherence and competence.
Published in:
BMC Microbiology, 2014, v. 14, n. 1, p. 1, doi. 10.1186/s12866-014-0210-x
By:
- Schaffner, Thierry O.;
- Hinds, Jason;
- Gould, Katherine A.;
- Wüthrich, Daniel;
- Bruggmann, Rémy;
- Küffer, Marianne;
- Mühlemann, Kathrin;
- Hilty, Markus;
- Hathaway, Lucy J.
Publication type:
Article

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