Works matching AU Vu, Trung Nghia

Results: 27

Similarities and differences of bone marrow and peripheral blood samples from acute myeloid leukemia patients in terms of cellular heterogeneity and ex‐vivo drug sensitivity.

Published in:

EJHaem, 2024, v. 5, n. 4, p. 721, doi. 10.1002/jha2.961

By:

Caliskan, Gulser;
Pawitan, Yudi;
Vu, Trung Nghia

Publication type:

Article

Discovery of druggable cancer-specific pathways with application in acute myeloid leukemia.

Published in:

GigaScience, 2022, v. 11, p. 1, doi. 10.1093/gigascience/giac091

By:

Trac, Quang Thinh;
Zhou, Tingyou;
Pawitan, Yudi;
Vu, Trung Nghia

Publication type:

Article

Reproducibility of Methods to Detect Differentially Expressed Genes from Single-Cell RNA Sequencing.

Published in:

Frontiers in Genetics, 2020, v. 10, p. 1, doi. 10.3389/fgene.2019.01331

By:

Mou, Tian;
Deng, Wenjiang;
Gu, Fengyun;
Pawitan, Yudi;
Vu, Trung Nghia

Publication type:

Article

InSourcerer: a high‐throughput method to search for unknown metabolite modifications by mass spectrometry.

Published in:

Rapid Communications in Mass Spectrometry: RCM, 2017, v. 31, n. 17, p. 1396, doi. 10.1002/rcm.7910

By:

Mrzic, Aida;
Lermyte, Frederik;
Trung Nghia Vu;
Valkenborg, Dirk;
Laukens, Kris

Publication type:

Article

The transcriptome‐wide landscape of molecular subtype‐specific mRNA expression profiles in acute myeloid leukemia.

Published in:

American Journal of Hematology, 2021, v. 96, n. 5, p. 580, doi. 10.1002/ajh.26141

By:

Mou, Tian;
Pawitan, Yudi;
Stahl, Matthias;
Vesterlund, Mattias;
Deng, Wenjiang;
Jafari, Rozbeh;
Bohlin, Anna;
Österroos, Albin;
Siavelis, Loannis;
Bäckvall, Helena;
Erkers, Tom;
Kiviluoto, Santeri;
Seashore‐Ludlow, Brinton;
Östling, Päivi;
Orre, Lukas M.;
Kallioniemi, Olli;
Lehmann, Sören;
Lehtiö, Janne;
Vu, Trung Nghia

Publication type:

Article

Isoform-level quantification for single-cell RNA sequencing.

Published in:

Bioinformatics, 2022, v. 38, n. 5, p. 1287, doi. 10.1093/bioinformatics/btab807

By:

Pan, Lu;
Dinh, Huy Q;
Pawitan, Yudi;
Vu, Trung Nghia

Publication type:

Article

Circall: fast and accurate methodology for discovery of circular RNAs from paired-end RNA-sequencing data.

Published in:

BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04418-8

By:

Nguyen, Dat Thanh;
Trac, Quang Thinh;
Nguyen, Thi-Hau;
Nguyen, Ha-Nam;
Ohad, Nir;
Pawitan, Yudi;
Vu, Trung Nghia

Publication type:

Article

Evaluation of methods to detect circular RNAs from single-end RNA-sequencing data.

Published in:

BMC Genomics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12864-022-08329-7

By:

Nguyen, Manh Hung;
Nguyen, Ha-Nam;
Vu, Trung Nghia

Publication type:

Article

A primer to frequent itemset mining for bioinformatics.

Published in:

Briefings in Bioinformatics, 2015, v. 16, n. 2, p. 216, doi. 10.1093/bib/bbt074

By:

Naulaerts, Stefan;
Meysman, Pieter;
Bittremieux, Wout;
Vu, Trung Nghia;
Berghe, Wim Vanden;
Goethals, Bart;
Laukens, Kris

Publication type:

Article

<sup>1</sup>H-NMR study of the metabolome of a moderately hypoxia-tolerant fish, the common carp (<i>Cyprinus carpio</i>)

Published in:

Metabolomics, 2013, v. 9, n. 6, p. 1216, doi. 10.1007/s11306-013-0540-y

By:

Lardon, Isabelle;
Eyckmans, Marleen;
Vu, Trung Nghia;
Laukens, Kris;
De Boeck, Gudrun;
Dommisse, Roger

Publication type:

Article

Alternating EM algorithm for a bilinear model in isoform quantification from RNA-seq data.

Published in:

Bioinformatics, 2020, v. 36, n. 3, p. 805, doi. 10.1093/bioinformatics/btz640

By:

Deng, Wenjiang;
Mou, Tian;
Kalari, Krishna R;
Niu, Nifang;
Wang, Liewei;
Pawitan, Yudi;
Vu, Trung Nghia

Publication type:

Article

Cell-level somatic mutation detection from single-cell RNA sequencing.

Published in:

Bioinformatics, 2019, v. 35, n. 22, p. 4679, doi. 10.1093/bioinformatics/btz288

By:

Vu, Trung Nghia;
Nguyen, Ha-Nam;
Calza, Stefano;
Kalari, Krishna R;
Wang, Liewei;
Pawitan, Yudi

Publication type:

Article

Isoform-level gene expression patterns in single-cell RNA-sequencing data.

Published in:

Bioinformatics, 2018, v. 34, n. 14, p. 2392, doi. 10.1093/bioinformatics/bty100

By:

Vu, Trung Nghia;
Wills, Quin F;
Kalari, Krishna R;
Niu, Nifang;
Wang, Liewei;
Pawitan, Yudi;
Rantalainen, Mattias

Publication type:

Article

Beta-Poisson model for single-cell RNA-seq data analyses.

Published in:

Bioinformatics, 2016, v. 32, n. 14, p. 2128, doi. 10.1093/bioinformatics/btw202

By:

Vu, Trung Nghia;
Wills, Quin F.;
Kalari, Krishna R.;
Nifang Niu;
Liewei Wang;
Rantalainen, Mattias;
Pawitan, Yudi

Publication type:

Article

Pathway activation model for personalized prediction of drug synergy.

Published in:

eLife, 2025, p. 1, doi. 10.7554/eLife.100071

By:

Quang Thinh Trac;
Yue Huang;
Erkers, Tom;
Östling, Päivi;
Bohlin, Anna;
Osterroos, Albin;
Vesterlund, Mattias;
Jafari, Rozbeh;
Siavelis, Ioannis;
Backvall, Helena;
Kiviluoto, Santeri;
Orre, Lukas;
Rantalainen, Mattias;
Lehtiö, Janne;
Lehmann, Soren;
Kallioniemi, Olli;
Pawitan, Yudi;
Trung Nghia Vu

Publication type:

Article

Comprehensive transcriptomic analysis to identify biological and clinical differences in cholangiocarcinoma.

Published in:

Cancer Medicine, 2023, v. 12, n. 8, p. 10156, doi. 10.1002/cam4.5719

By:

Silvestri, Marco;
Nghia Vu, Trung;
Nichetti, Federico;
Niger, Monica;
Di Cosimo, Serena;
De Braud, Filippo;
Pruneri, Giancarlo;
Pawitan, Yudi;
Calza, Stefano;
Cappelletti, Vera

Publication type:

Article

A fast detection of fusion genes from paired-end RNA-seq data.

Published in:

BMC Genomics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12864-018-5156-1

By:

Vu, Trung Nghia;
Deng, Wenjiang;
Trac, Quang Thinh;
Calza, Stefano;
Hwang, Woochang;
Pawitan, Yudi

Publication type:

Article

FACTORS INFLUENCING THE URGE TO BUY IMPULSIVELY OF VIETNAMESE ONLINE BUYING CUSTOMERS TOWARDS BITI'S HUNTER SPORT SHOES.

Published in:

Journal of Eastern European & Central Asian Research, 2023, v. 10, n. 7, p. 1027, doi. 10.15549/jeecar.v10i7.1345

By:

Xuan-Nhi Nguyen;
Hung Cuong Hoang;
Trung-Nghia Vu

Publication type:

Article

Spiny dogfish, Squalus suckleyi, shows a good tolerance for hypoxia but need long recovery times.

Published in:

Conservation Physiology, 2024, v. 12, n. 1, p. 1, doi. 10.1093/conphys/coae054

By:

Boeck, Gudrun De;
Lardon, Isabelle;
Eyckmans, Marleen;
Vu, Trung Nghia;
Laukens, Kris;
Dommisse, Roger;
Wood, Chris M

Publication type:

Article

The radiosensitising effect of gemcitabine and its main metabolite dFdU under low oxygen conditions is in vitro not dependent on functional HIF-1 protein.

Published in:

BMC Cancer, 2014, v. 14, p. 1, doi. 10.1186/1471-2407-14-594

By:

Wouters, An;
Pauwels, Bea;
Burrows, Natalie;
Baay, Marc;
Deschoolmeester, Vanessa;
Trung Nghia Vu;
Laukens, Kris;
Meijnders, Paul;
Van Gestel, Dirk;
Williams, Kaye J.;
Van den Weyngaert, Danielle;
Vermorken, Jan B.;
Pauwels, Patrick;
Peeters, Marc;
Lardon, Filip

Publication type:

Article

The radiosensitising effect of gemcitabine and its main metabolite dFdU under low oxygen conditions is in vitro not dependent on functional HIF-1 protein.

Published in:

2014

By:

Wouters, An;
Pauwels, Bea;
Burrows, Natalie;
Baay, Marc;
Deschoolmeester, Vanessa;
Vu, Trung Nghia;
Laukens, Kris;
Meijnders, Paul;
Van Gestel, Dirk;
Williams, Kaye J;
Van den Weyngaert, Danielle;
Vermorken, Jan B;
Pauwels, Patrick;
Peeters, Marc;
Lardon, Filip

Publication type:

journal article

CircNetVis: an interactive web application for visualizing interaction networks of circular RNAs.

Published in:

BMC Bioinformatics, 2024, v. 25, n. 1, p. 1, doi. 10.1186/s12859-024-05646-4

By:

Nguyen, Thi-Hau;
Nguyen, Ha-Nam;
Vu, Trung Nghia

Publication type:

Article

speaq 2.0: A complete workflow for high-throughput 1D NMR spectra processing and quantification.

Published in:

PLoS Computational Biology, 2018, v. 14, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006018

By:

Beirnaert, Charlie;
Meysman, Pieter;
Vu, Trung Nghia;
Hermans, Nina;
Apers, Sandra;
Pieters, Luc;
Covaci, Adrian;
Laukens, Kris

Publication type:

Article

Quantification of mutant–allele expression at isoform level in cancer from RNA-seq data.

Published in:

NAR Genomics & Bioinformatics, 2022, v. 4, n. 3, p. 1, doi. 10.1093/nargab/lqac052

By:

Deng, Wenjiang;
Mou, Tian;
Pawitan, Yudi;
Vu, Trung Nghia

Publication type:

Article

A Comprehensive Landscape of Imaging Feature-Associated RNA Expression Profiles in Human Breast Tissue.

Published in:

Sensors (14248220), 2023, v. 23, n. 3, p. 1432, doi. 10.3390/s23031432

By:

Mou, Tian;
Liang, Jianwen;
Vu, Trung Nghia;
Tian, Mu;
Gao, Yi

Publication type:

Article

Prediction model for drug response of acute myeloid leukemia patients.

Published in:

NPJ Precision Oncology, 2023, v. 7, n. 1, p. 1, doi. 10.1038/s41698-023-00374-z

By:

Trac, Quang Thinh;
Pawitan, Yudi;
Mou, Tian;
Erkers, Tom;
Östling, Päivi;
Bohlin, Anna;
Österroos, Albin;
Vesterlund, Mattias;
Jafari, Rozbeh;
Siavelis, Ioannis;
Bäckvall, Helena;
Kiviluoto, Santeri;
Orre, Lukas M.;
Rantalainen, Mattias;
Lehtiö, Janne;
Lehmann, Sören;
Kallioniemi, Olli;
Vu, Trung Nghia

Publication type:

Article

Accumulation of potential driver genes with genomic alterations predicts survival of high-risk neuroblastoma patients.

Published in:

Biology Direct, 2018, v. 13, n. 1, p. N.PAG, doi. 10.1186/s13062-018-0218-5

By:

Suo, Chen;
Deng, Wenjiang;
Vu, Trung Nghia;
Li, Mingrui;
Shi, Leming;
Pawitan, Yudi

Publication type:

Article