Works by Vrancken, Bram

Results: 47
    1
    2

    Archival influenza virus genomes from Europe reveal genomic variability during the 1918 pandemic.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-29614-9
    By:
    • Patrono, Livia V.;
    • Vrancken, Bram;
    • Budt, Matthias;
    • Düx, Ariane;
    • Lequime, Sebastian;
    • Boral, Sengül;
    • Gilbert, M. Thomas P.;
    • Gogarten, Jan F.;
    • Hoffmann, Luisa;
    • Horst, David;
    • Merkel, Kevin;
    • Morens, David;
    • Prepoint, Baptiste;
    • Schlotterbeck, Jasmin;
    • Schuenemann, Verena J.;
    • Suchard, Marc A.;
    • Taubenberger, Jeffery K.;
    • Tenkhoff, Luisa;
    • Urban, Christian;
    • Widulin, Navena
    Publication type:
    Article
    3

    Implications of hepatitis C virus subtype 1a migration patterns for virus genetic sequencing policies in Italy.

    Published in:
    BMC Evolutionary Biology, 2017, v. 17, p. 1, doi. 10.1186/s12862-017-0913-3
    By:
    • Cuypers, Lize;
    • Vrancken, Bram;
    • Fabeni, Lavinia;
    • Marascio, Nadia;
    • Cento, Valeria;
    • Di Maio, Velia Chiara;
    • Aragri, Marianna;
    • Pineda-Peña, Andrea Clemencia;
    • Schrooten, Yoeri;
    • Van Laethem, Kristel;
    • Balog, Daniel;
    • Focà, Alfredo;
    • Torti, Carlo;
    • Nevens, Frederik;
    • Perno, Carlo Federico;
    • Vandamme, Anne-Mieke;
    • Ceccherini-Silberstein, Francesca
    Publication type:
    Article
    4
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    Application of Phylodynamic Tools to Inform the Public Health Response to COVID-19: Qualitative Analysis of Expert Opinions.

    Published in:
    JMIR Formative Research, 2023, v. 7, n. 1, p. 1, doi. 10.2196/39409
    By:
    • Rich, Shannan N;
    • Richards, Veronica;
    • Mavian, Carla;
    • Rife Magalis, Brittany;
    • Grubaugh, Nathan;
    • Rasmussen, Sonja A;
    • Dellicour, Simon;
    • Vrancken, Bram;
    • Carrington, Christine;
    • Fisk-Hoffman, Rebecca;
    • Danso-Odei, Demi;
    • Chacreton, Daniel;
    • Shapiro, Jerne;
    • Seraphin, Marie Nancy;
    • Hepp, Crystal;
    • Black, Allison;
    • Dennis, Ann;
    • Trovão, Nídia Sequeira;
    • Vandamme, Anne-Mieke;
    • Rasmussen, Angela
    Publication type:
    Article
    6

    Predicting the evolution of the Lassa virus endemic area and population at risk over the next decades.

    Published in:
    Nature Communications, 2022, v. 13, n. 1, p. 1, doi. 10.1038/s41467-022-33112-3
    By:
    • Klitting, Raphaëlle;
    • Kafetzopoulou, Liana E.;
    • Thiery, Wim;
    • Dudas, Gytis;
    • Gryseels, Sophie;
    • Kotamarthi, Anjali;
    • Vrancken, Bram;
    • Gangavarapu, Karthik;
    • Momoh, Mambu;
    • Sandi, John Demby;
    • Goba, Augustine;
    • Alhasan, Foday;
    • Grant, Donald S.;
    • Okogbenin, Sylvanus;
    • Ogbaini-Emovo, Ephraim;
    • Garry, Robert F.;
    • Smither, Allison R.;
    • Zeller, Mark;
    • Pauthner, Matthias G.;
    • McGraw, Michelle
    Publication type:
    Article
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    Increasing importance of European lineages in seeding the hepatitis C virus subtype 1a epidemic in Spain.

    Published in:
    Eurosurveillance (15607917), 2019, v. 24, n. 9, p. 25, doi. 10.2807/1560-7917.ES.2019.24.9.1800227
    By:
    • Pérez, Ana Belen;
    • Vrancken, Bram;
    • Chueca, Natalia;
    • Aguilera, Antonio;
    • Reina, Gabriel;
    • García-del Toro, Miguel;
    • Vera, Francisco;
    • Von Wichman, Miguel Angel;
    • Arenas, Juan Ignacio;
    • Téllez, Francisco;
    • Pineda, Juan A;
    • Omar, Mohamed;
    • Bernal, Enrique;
    • Rivero-Juárez, Antonio;
    • Fernández-Fuertes, Elisa;
    • de la Iglesia, Alberto;
    • Manuel Pascasio, Juan;
    • Lemey, Philippe;
    • Garcia, Féderico;
    • Cuypers, Lize
    Publication type:
    Article
    11
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    Transmission dynamics of re-emerging rabies in domestic dogs of rural China.

    Published in:
    PLoS Pathogens, 2018, v. 14, n. 12, p. 1, doi. 10.1371/journal.ppat.1007392
    By:
    • Tian, Huaiyu;
    • Yang, Qiqi;
    • Li, Yidan;
    • Feng, Yun;
    • Yang, Weihong;
    • Zhang, Yuzhen;
    • Zhang, Yunzhi;
    • Zhang, Hailin;
    • Vrancken, Bram;
    • Gill, Mandev S.;
    • Lemey, Philippe;
    • Dellicour, Simon;
    • Cazelles, Bernard;
    • Tan, Hua;
    • Pybus, Oliver G.;
    • Stenseth, Nils Chr.
    Publication type:
    Article
    14

    Evaluating predictive markers for viral rebound and safety assessment in blood and lumbar fluid during HIV-1 treatment interruption.

    Published in:
    2020
    By:
    • Scheerder, Marie-Angélique De;
    • Hecke, Clarissa Van;
    • Zetterberg, Henrik;
    • Fuchs, Dietmar;
    • Langhe, Nele De;
    • Rutsaert, Sofie;
    • Vrancken, Bram;
    • Trypsteen, Wim;
    • Noppe, Ytse;
    • Gucht, Bea Van Der;
    • Pelgrom, Jolanda;
    • Wanzeele, Filip Van;
    • Palmer, Sarah;
    • Lemey, Philippe;
    • Gisslén, Magnus;
    • Vandekerckhove, Linos;
    • De Scheerder, Marie-Angélique;
    • Van Hecke, Clarissa;
    • De Langhe, Nele;
    • Van Der Gucht, Bea
    Publication type:
    journal article
    15

    Epidemiological hypothesis testing using a phylogeographic and phylodynamic framework.

    Published in:
    Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19122-z
    By:
    • Dellicour, Simon;
    • Lequime, Sebastian;
    • Vrancken, Bram;
    • Gill, Mandev S.;
    • Bastide, Paul;
    • Gangavarapu, Karthik;
    • Matteson, Nathaniel L.;
    • Tan, Yi;
    • du Plessis, Louis;
    • Fisher, Alexander A.;
    • Nelson, Martha I.;
    • Gilbert, Marius;
    • Suchard, Marc A.;
    • Andersen, Kristian G.;
    • Grubaugh, Nathan D.;
    • Pybus, Oliver G.;
    • Lemey, Philippe
    Publication type:
    Article
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    Unraveling the Dynamics of Omicron (BA.1, BA.2, and BA.5) Waves and Emergence of the Deltacton Variant: Genomic Epidemiology of the SARS-CoV-2 Epidemic in Cyprus (Oct 2021–Oct 2022).

    Published in:
    Viruses (1999-4915), 2023, v. 15, n. 9, p. 1933, doi. 10.3390/v15091933
    By:
    • Chrysostomou, Andreas C.;
    • Vrancken, Bram;
    • Haralambous, Christos;
    • Alexandrou, Maria;
    • Gregoriou, Ioanna;
    • Ioannides, Marios;
    • Ioannou, Costakis;
    • Kalakouta, Olga;
    • Karagiannis, Christos;
    • Marcou, Markella;
    • Masia, Christina;
    • Mendris, Michail;
    • Papastergiou, Panagiotis;
    • Patsalis, Philippos C.;
    • Pieridou, Despo;
    • Shammas, Christos;
    • Stylianou, Dora C.;
    • Zinieri, Barbara;
    • Lemey, Philippe;
    • Network, The COMESSAR
    Publication type:
    Article
    21

    Analyses of Early ZIKV Genomes Are Consistent with Viral Spread from Northeast Brazil to the Americas.

    Published in:
    Viruses (1999-4915), 2023, v. 15, n. 6, p. 1236, doi. 10.3390/v15061236
    By:
    • de Moraes, Laise;
    • Portilho, Moyra M.;
    • Vrancken, Bram;
    • Van den Broeck, Frederik;
    • Santos, Luciane Amorim;
    • Cucco, Marina;
    • Tauro, Laura B.;
    • Kikuti, Mariana;
    • Silva, Monaise M. O.;
    • Campos, Gúbio S.;
    • Reis, Mitermayer G.;
    • Barral, Aldina;
    • Barral-Netto, Manoel;
    • Boaventura, Viviane Sampaio;
    • Vandamme, Anne-Mieke;
    • Theys, Kristof;
    • Lemey, Philippe;
    • Ribeiro, Guilherme S.;
    • Khouri, Ricardo
    Publication type:
    Article
    22

    Genomic Epidemiology of the SARS-CoV-2 Epidemic in Cyprus from November 2020 to October 2021: The Passage of Waves of Alpha and Delta Variants of Concern.

    Published in:
    Viruses (1999-4915), 2023, v. 15, n. 1, p. 108, doi. 10.3390/v15010108
    By:
    • Chrysostomou, Andreas C.;
    • Vrancken, Bram;
    • Haralambous, Christos;
    • Alexandrou, Maria;
    • Aristokleous, Antonia;
    • Christodoulou, Christina;
    • Gregoriou, Ioanna;
    • Ioannides, Marios;
    • Kalakouta, Olga;
    • Karagiannis, Christos;
    • Koumbaris, George;
    • Loizides, Charalambos;
    • Mendris, Michail;
    • Papastergiou, Panagiotis;
    • Patsalis, Philippos C.;
    • Pieridou, Despo;
    • Richter, Jan;
    • Schmitt, Markus;
    • Shammas, Christos;
    • Stylianou, Dora C.
    Publication type:
    Article
    23
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    A Comprehensive Molecular Epidemiological Analysis of SARS-CoV-2 Infection in Cyprus from April 2020 to January 2021: Evidence of a Highly Polyphyletic and Evolving Epidemic.

    Published in:
    Viruses (1999-4915), 2021, v. 13, n. 6, p. 1098, doi. 10.3390/v13061098
    By:
    • Chrysostomou, Andreas C.;
    • Vrancken, Bram;
    • Koumbaris, George;
    • Themistokleous, George;
    • Aristokleous, Antonia;
    • Masia, Christina;
    • Eleftheriou, Christina;
    • Iοannou, Costakis;
    • Stylianou, Dora C.;
    • Ioannides, Marios;
    • Petrou, Panagiotis;
    • Georgiou, Vasilis;
    • Hatziyianni, Amalia;
    • Lemey, Philippe;
    • Vandamme, Anne-Mieke;
    • Patsalis, Philippos P.;
    • Kostrikis, Leondios G.
    Publication type:
    Article
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    Dynamics and Dispersal of Local Human Immunodeficiency Virus Epidemics Within San Diego and Across the San Diego–Tijuana Border.

    Published in:
    Clinical Infectious Diseases, 2021, v. 73, n. 7, p. e2018, doi. 10.1093/cid/ciaa1588
    By:
    • Vrancken, Bram;
    • Mehta, Sanjay R;
    • Ávila-Ríos, Santiago;
    • García-Morales, Claudia;
    • Tapia-Trejo, Daniela;
    • Reyes-Terán, Gustavo;
    • Navarro-Álvarez, Samuel;
    • Little, Susan J;
    • Hoenigl, Martin;
    • Pines, Heather A;
    • Patterson, Thomas;
    • Strathdee, Steffanie A;
    • Smith, Davey M;
    • Dellicour, Simon;
    • Chaillon, Antoine
    Publication type:
    Article
    30
    31

    Molecular detection and genomic characterization of diverse hepaciviruses in African rodents.

    Published in:
    Virus Evolution, 2021, v. 7, n. 1, p. 1, doi. 10.1093/ve/veab036
    By:
    • Bletsa, Magda;
    • Vrancken, Bram;
    • Gryseels, Sophie;
    • Boonen, Ine;
    • Fikatas, Antonios;
    • Li, Yiqiao;
    • Laudisoit, Anne;
    • Lequime, Sebastian;
    • Bryja, Josef;
    • Makundi, Rhodes;
    • Meheretu, Yonas;
    • Akaibe, Benjamin Dudu;
    • Mbalitini, Sylvestre Gambalemoke;
    • Perre, Frederik Van de;
    • Houtte, Natalie Van;
    • Těšíková, Jana;
    • Wollants, Elke;
    • Ranst, Marc Van;
    • Pybus, Oliver G;
    • Drexler, Jan Felix
    Publication type:
    Article
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    Disentangling the role of Africa in the global spread of H5 highly pathogenic avian influenza.

    Published in:
    Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-13287-y
    By:
    • Fusaro, Alice;
    • Zecchin, Bianca;
    • Vrancken, Bram;
    • Abolnik, Celia;
    • Ademun, Rose;
    • Alassane, Abdou;
    • Arafa, Abdelsatar;
    • Awuni, Joseph Adongo;
    • Couacy-Hymann, Emmanuel;
    • Coulibaly, M.' Bétiégué;
    • Gaidet, Nicolas;
    • Go-Maro, Emilie;
    • Joannis, Tony;
    • Jumbo, Simon Dickmu;
    • Minoungou, Germaine;
    • Meseko, Clement;
    • Souley, Maman Moutari;
    • Ndumu, Deo Birungi;
    • Shittu, Ismaila;
    • Twabela, Augustin
    Publication type:
    Article
    37

    Drivers of HIV-1 transmission: The Portuguese case.

    Published in:
    PLoS ONE, 2019, v. 14, n. 9, p. 1, doi. 10.1371/journal.pone.0218226
    By:
    • Pineda-Peña, Andrea-Clemencia;
    • Pingarilho, Marta;
    • Li, Guangdi;
    • Vrancken, Bram;
    • Libin, Pieter;
    • Gomes, Perpétua;
    • Camacho, Ricardo Jorge;
    • Theys, Kristof;
    • Barroso Abecasis, Ana;
    • null, null
    Publication type:
    Article
    38

    Detection of Natural Resistance-Associated Substitutions by Ion Semiconductor Technology in HCV1b Positive, Direct-Acting Antiviral Agents-Naïve Patients.

    Published in:
    International Journal of Molecular Sciences, 2016, v. 17, n. 9, p. 1416, doi. 10.3390/ijms17091416
    By:
    • Marascio, Nadia;
    • Pavia, Grazia;
    • Strazzulla, Alessio;
    • Dierckx, Tim;
    • Cuypers, Lize;
    • Vrancken, Bram;
    • Barreca, Giorgio Settimo;
    • Mirante, Teresa;
    • Malanga, Donatella;
    • Oliveira, Duarte Mendes;
    • Vandamme, Anne-Mieke;
    • Torti, Carlo;
    • Liberto, Maria Carla;
    • Focà, Alfredo
    Publication type:
    Article
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    Genomic Epidemiology of 2015-2016 Zika Virus Outbreak in Cape Verde.

    Published in:
    2020
    By:
    • Faye, Oumar;
    • Monteiro, Maria de Lourdes;
    • Vrancken, Bram;
    • Prot, Matthieu;
    • Lequime, Sebastian;
    • Diarra, Maryam;
    • Ndiaye, Oumar;
    • Valdez, Tomas;
    • Tavarez, Sandra;
    • Ramos, Jessica;
    • Leal, Silvânia da Veiga;
    • Pires, Cecilio;
    • Moreira, Antonio;
    • Tavares, Maria Filomena;
    • Fernandes, Linete;
    • Barreto, Jorge Noel;
    • Teixeira, Maria do Céu;
    • de Lima Mendonça, Maria da Luz;
    • da Silva Leite Gomes, Carolina Cardoso;
    • Castellon, Mariano Salazar
    Publication type:
    journal article
    43

    The genomic evolutionary dynamics and global circulation patterns of respiratory syncytial virus.

    Published in:
    Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-47118-6
    By:
    • Langedijk, Annefleur C.;
    • Vrancken, Bram;
    • Lebbink, Robert Jan;
    • Wilkins, Deidre;
    • Kelly, Elizabeth J.;
    • Baraldi, Eugenio;
    • Mascareñas de Los Santos, Abiel Homero;
    • Danilenko, Daria M.;
    • Choi, Eun Hwa;
    • Palomino, María Angélica;
    • Chi, Hsin;
    • Keller, Christian;
    • Cohen, Robert;
    • Papenburg, Jesse;
    • Pernica, Jeffrey;
    • Greenough, Anne;
    • Richmond, Peter;
    • Martinón-Torres, Federico;
    • Heikkinen, Terho;
    • Stein, Renato T.
    Publication type:
    Article
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    A paucigranulocytic asthma host environment promotes the emergence of virulent influenza viral variants.

    Published in:
    eLife, 2021, p. 1, doi. 10.7554/eLife.61803
    By:
    • Hulme, Katina D.;
    • Karawita, Anjana C.;
    • Pegg, Cassandra;
    • Bunte, Myrna J. M.;
    • Bielefeldt-Ohmann, Helle;
    • Bloxham, Conor J.;
    • Van den Hoecke, Silvie;
    • Yin Xiang Setoh;
    • Vrancken, Bram;
    • Spronken, Monique;
    • Steele, Lauren E.;
    • Verzele, Nathalie A. J.;
    • Upton, Kyle R.;
    • Khromykh, Alexander A.;
    • Keng Yih Chew;
    • Sukkar, Maria;
    • Phipps, Simon;
    • Short, Kirsty R.
    Publication type:
    Article