Works by Vorholt, Julia A.

Results: 69

Characterization of Methylobacterium strains isolated from the phyllosphere and description of Methylobacterium longum sp. nov.

Published in:

Antonie van Leeuwenhoek, 2012, v. 101, n. 1, p. 169, doi. 10.1007/s10482-011-9650-6

By:

Knief, Claudia;
Dengler, Vanina;
Bodelier, Paul;
Vorholt, Julia

Publication type:

Article

Competitiveness of Diverse Methylobacterium Strains in the Phyllosphere of Arabidopsis thaliana and Identification of Representative Models, Including M. extorquens PA1.

Published in:

Microbial Ecology, 2010, v. 60, n. 2, p. 440, doi. 10.1007/s00248-010-9725-3

By:

Knief, Claudia;
Frances, Lisa;
Vorholt, Julia A.

Publication type:

Article

Identifying microbiota community patterns important for plant protection using synthetic communities and machine learning.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-43793-z

By:

Emmenegger, Barbara;
Massoni, Julien;
Pestalozzi, Christine M.;
Bortfeld-Miller, Miriam;
Maier, Benjamin A.;
Vorholt, Julia A.

Publication type:

Article

Phosphorelay through the bifunctional phosphotransferase PhyT controls the general stress response in an alphaproteobacterium.

Published in:

PLoS Genetics, 2018, v. 14, n. 4, p. 1, doi. 10.1371/journal.pgen.1007294

By:

Gottschlich, Lisa;
Bortfeld-Miller, Miriam;
Gäbelein, Christoph;
Dintner, Sebastian;
Vorholt, Julia A.

Publication type:

Article

Structural basis for −10 promoter element melting by environmentally induced sigma factors.

Published in:

Nature Structural & Molecular Biology, 2014, v. 21, n. 3, p. 269, doi. 10.1038/nsmb.2777

By:

Campagne, Sébastien;
Marsh, May E;
Capitani, Guido;
Vorholt, Julia A;
Allain, Frédéric H-T

Publication type:

Article

Microbial life in the phyllosphere.

Published in:

Nature Reviews Microbiology, 2012, v. 10, n. 12, p. 828, doi. 10.1038/nrmicro2910

By:

Vorholt, Julia A.

Publication type:

Article

Methanol-essential growth of Escherichia coli.

Published in:

Nature Communications, 2018, v. 9, n. 1, p. 1, doi. 10.1038/s41467-018-03937-y

By:

Meyer, Fabian;
Keller, Philipp;
Hartl, Johannes;
Gröninger, Olivier G.;
Kiefer, Patrick;
Vorholt, Julia A.

Publication type:

Article

Complete genome sequence and metabolic potential of the quinaldine-degrading bacterium Arthrobacter sp. Rue61a.

Published in:

BMC Genomics, 2012, v. 13, n. 1, p. 534, doi. 10.1186/1471-2164-13-534

By:

Niewerth, Heiko;
Schuldes, J�rg;
Parschat, Katja;
Kiefer, Patrick;
Vorholt, Julia A.;
Daniel, Rolf;
Fetzner, Susanne

Publication type:

Article

High-level production of ethylmalonyl-CoA pathway-derived dicarboxylic acids by Methylobacterium extorquens under cobalt-deficient conditions and by polyhydroxybutyrate negative strains.

Published in:

Applied Microbiology & Biotechnology, 2015, v. 99, n. 8, p. 3407, doi. 10.1007/s00253-015-6418-3

By:

Sonntag, Frank;
Müller, Jonas;
Kiefer, Patrick;
Vorholt, Julia;
Schrader, Jens;
Buchhaupt, Markus

Publication type:

Article

Methylotrophy in the thermophilic Bacillus methanolicus, basic insights and application for commodity production from methanol.

Published in:

Applied Microbiology & Biotechnology, 2015, v. 99, n. 2, p. 535, doi. 10.1007/s00253-014-6224-3

By:

Müller, Jonas;
Heggeset, Tonje;
Wendisch, Volker;
Vorholt, Julia;
Brautaset, Trygve

Publication type:

Article

Methylobacterium extorquens: methylotrophy and biotechnological applications.

Published in:

Applied Microbiology & Biotechnology, 2015, v. 99, n. 2, p. 517, doi. 10.1007/s00253-014-6240-3

By:

Ochsner, Andrea;
Sonntag, Frank;
Buchhaupt, Markus;
Schrader, Jens;
Vorholt, Julia

Publication type:

Article

The molecular basis of phosphate discrimination in arsenate-rich environments.

Published in:

Nature, 2012, v. 491, n. 7422, p. 134, doi. 10.1038/nature11517

By:

Elias, Mikael;
Wellner, Alon;
Goldin-Azulay, Korina;
Chabriere, Eric;
Vorholt, Julia A.;
Erb, Tobias J.;
Tawfik, Dan S.

Publication type:

Article

A selenium-dependent and a selenium-independent formylmethanofuran dehydrogenase and their transcriptional regulation in the hyperthermophilic Methanopyrus kandleri.

Published in:

Molecular Microbiology, 1997, v. 23, n. 5, p. 1033, doi. 10.1046/j.1365-2958.1997.2931653.x

By:

Vorholt, Julia A.;
Vaupel, Martin;
Thauer, Rudolf K.

Publication type:

Article

Multiple σEcfG and NepR Proteins Are Involved in the General Stress Response in Methylobacterium extorquens.

Published in:

PLoS ONE, 2016, v. 11, n. 3, p. 1, doi. 10.1371/journal.pone.0152519

By:

Francez-Charlot, Anne;
Frunzke, Julia;
Zingg, Judith;
Kaczmarczyk, Andreas;
Vorholt, Julia A.

Publication type:

Article

Toblerols: Cyclopropanol‐Containing Polyketide Modulators of Antibiosis in Methylobacteria.

Published in:

Angewandte Chemie International Edition, 2018, v. 57, n. 4, p. 977, doi. 10.1002/anie.201709056

By:

Ueoka, Reiko;
Bortfeld‐Miller, Miriam;
Vorholt, Julia A.;
Piel, Jörn;
Morinaka, Brandon I.

Publication type:

Article

Screening and Engineering the Synthetic Potential of Carboxylating Reductases from Central Metabolism and Polyketide Biosynthesis.

Published in:

Angewandte Chemie International Edition, 2015, v. 54, n. 45, p. 13457, doi. 10.1002/anie.201505282

By:

Peter, Dominik M.;
Schada von Borzyskowski, Lennart;
Kiefer, Patrick;
Christen, Philipp;
Vorholt, Julia A.;
Erb, Tobias J.

Publication type:

Article

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 7, p. 1378, doi. 10.1038/ismej.2011.192

By:

Knief, Claudia;
Delmotte, Nathanaël;
Chaffron, Samuel;
Stark, Manuel;
Innerebner, Gerd;
Wassmann, Reiner;
von Mering, Christian;
Vorholt, Julia A

Publication type:

Article

Site and plant species are important determinants of the Methylobacterium community composition in the plant phyllosphere.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2010, v. 4, n. 6, p. 719, doi. 10.1038/ismej.2010.9

By:

Knief, Claudia;
Ramette, Alban;
Frances, Lisa;
Alonso-Blanco, Carlos;
Vorholt, Julia A.

Publication type:

Article

Direct Salmonella injection into enteroid cells allows the study of host–pathogen interactions in the cytosol with high spatiotemporal resolution.

Published in:

PLoS Biology, 2024, v. 22, n. 4, p. 1, doi. 10.1371/journal.pbio.3002597

By:

Ernst, Chantal;
Andreassen, Patrick R.;
Giger, Gabriel H.;
Nguyen, Bidong D.;
Gäbelein, Christoph G.;
Guillaume-Gentil, Orane;
Fattinger, Stefan A.;
Sellin, Mikael E.;
Hardt, Wolf-Dietrich;
Vorholt, Julia A.

Publication type:

Article

The microbiota conditions a gut milieu that selects for wild-type Salmonella Typhimurium virulence.

Published in:

PLoS Biology, 2023, v. 21, n. 8, p. 1, doi. 10.1371/journal.pbio.3002253

By:

Gül, Ersin;
Bakkeren, Erik;
Salazar, Guillem;
Steiger, Yves;
Abi Younes, Andrew;
Clerc, Melanie;
Christen, Philipp;
Fattinger, Stefan A.;
Nguyen, Bidong D.;
Kiefer, Patrick;
Slack, Emma;
Ackermann, Martin;
Vorholt, Julia A.;
Sunagawa, Shinichi;
Diard, Médéric;
Hardt, Wolf-Dietrich

Publication type:

Article

Core pathways operating during methylotrophy of Bacillus methanolicus MGA3 and induction of a bacillithiol-dependent detoxification pathway upon formaldehyde stress.

Published in:

Molecular Microbiology, 2015, v. 98, n. 6, p. 1089, doi. 10.1111/mmi.13200

By:

Müller, Jonas E. N.;
Meyer, Fabian;
Litsanov, Boris;
Kiefer, Patrick;
Vorholt, Julia A.

Publication type:

Article

The branched CcsA/ CckA- ChpT- CtrA phosphorelay of S phingomonas melonis controls motility and biofilm formation.

Published in:

Molecular Microbiology, 2015, v. 97, n. 1, p. 47, doi. 10.1111/mmi.13011

By:

Francez‐Charlot, Anne;
Kaczmarczyk, Andreas;
Vorholt, Julia A.

Publication type:

Article

Enzymes involved in the anaerobic degradation of meta-substituted halobenzoates.

Published in:

Molecular Microbiology, 2011, v. 82, n. 3, p. 758, doi. 10.1111/j.1365-2958.2011.07856.x

By:

Kuntze, Kevin;
Kiefer, Patrick;
Baumann, Sven;
Seifert, Jana;
von Bergen, Martin;
Vorholt, Julia A.;
Boll, Matthias

Publication type:

Article

The PhyR-σEcfG signalling cascade is involved in stress response and symbiotic efficiency in Bradyrhizobium japonicum.

Published in:

Molecular Microbiology, 2009, v. 73, n. 2, p. 291, doi. 10.1111/j.1365-2958.2009.06769.x

By:

Gourion, Benjamin;
Sulser, Sandra;
Frunzke, Julia;
Francez-Charlot, Anne;
Stiefel, Philipp;
Pessi, Gabriella;
Vorholt, Julia A.;
Fischer, Hans-Martin

Publication type:

Article

Fast sampling method for mammalian cell metabolic analyses using liquid chromatography-mass spectrometry.

Published in:

Nature Protocols, 2015, v. 10, n. 1, p. 1, doi. 10.1038/nprot.2014.198

By:

Martano, Giuseppe;
Delmotte, Nathanaël;
Kiefer, Patrick;
Christen, Philipp;
Kentner, David;
Bumann, Dirk;
Vorholt, Julia A

Publication type:

Article

Bacterial anoxygenic photosynthesis on plant leaf surfaces.

Published in:

Environmental Microbiology Reports, 2012, v. 4, n. 2, p. 209, doi. 10.1111/j.1758-2229.2011.00323.x

By:

Atamna-Ismaeel, Nof;
Finkel, Omri;
Glaser, Fabian;
von Mering, Christian;
Vorholt, Julia A.;
Koblížek, Michal;
Belkin, Shimshon;
Béjà, Oded

Publication type:

Article

Toblerols: Cyclopropanol‐Containing Polyketide Modulators of Antibiosis in Methylobacteria.

Published in:

Angewandte Chemie, 2018, v. 130, n. 4, p. 989, doi. 10.1002/ange.201709056

By:

Ueoka, Reiko;
Bortfeld‐Miller, Miriam;
Vorholt, Julia A.;
Piel, Jörn;
Morinaka, Brandon I.

Publication type:

Article

Klassifizierung und Manipulation des synthetischen Potenzials carboxylierender Reduktasen aus dem Zentralmetabolismus und der Polyketid-Biosynthese.

Published in:

Angewandte Chemie, 2015, v. 127, n. 45, p. 13659, doi. 10.1002/ange.201505282

By:

Peter, Dominik M.;
Schada von Borzyskowski, Lennart;
Kiefer, Patrick;
Christen, Philipp;
Vorholt, Julia A.;
Erb, Tobias J.

Publication type:

Article

Complex general stress response regulation in Sphingomonas melonis Fr1 revealed by transcriptional analyses.

Published in:

Scientific Reports, 2019, v. 9, n. 1, p. N.PAG, doi. 10.1038/s41598-019-45788-7

By:

Gottschlich, Lisa;
Geiser, Petra;
Bortfeld-Miller, Miriam;
Field, Christopher M.;
Vorholt, Julia A.

Publication type:

Article

Use of rare‐earth elements in the phyllosphere colonizer Methylobacterium extorquens PA1.

Published in:

Molecular Microbiology, 2019, v. 111, n. 5, p. 1152, doi. 10.1111/mmi.14208

By:

Ochsner, Andrea M.;
Hemmerle, Lucas;
Vonderach, Thomas;
Nüssli, Ralph;
Bortfeld‐Miller, Miriam;
Hattendorf, Bodo;
Vorholt, Julia A.

Publication type:

Article

Sublethal systemic LPS in mice enables gut-luminal pathogens to bloom through oxygen species-mediated microbiota inhibition.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-57979-0

By:

Kroon, Sanne;
Malcic, Dejan;
Weidert, Lena;
Bircher, Lea;
Boldt, Leonardo;
Christen, Philipp;
Kiefer, Patrick;
Sintsova, Anna;
Nguyen, Bidong D.;
Barthel, Manja;
Steiger, Yves;
Clerc, Melanie;
Herzog, Mathias K.-M.;
Chen, Carmen;
Gül, Ersin;
Guery, Benoit;
Slack, Emma;
Sunagawa, Shinichi;
Vorholt, Julia A.;
Maier, Lisa

Publication type:

Article

Sublethal systemic LPS in mice enables gut-luminal pathogens to bloom through oxygen species-mediated microbiota inhibition.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-57979-0

By:

Kroon, Sanne;
Malcic, Dejan;
Weidert, Lena;
Bircher, Lea;
Boldt, Leonardo;
Christen, Philipp;
Kiefer, Patrick;
Sintsova, Anna;
Nguyen, Bidong D.;
Barthel, Manja;
Steiger, Yves;
Clerc, Melanie;
Herzog, Mathias K.-M.;
Chen, Carmen;
Gül, Ersin;
Guery, Benoit;
Slack, Emma;
Sunagawa, Shinichi;
Vorholt, Julia A.;
Maier, Lisa

Publication type:

Article

Microfluidics: Force-Controlled Fluidic Injection into Single Cell Nuclei (Small 11/2013).

Published in:

Small, 2013, v. 9, n. 11, p. 1870, doi. 10.1002/smll.201370061

By:

Guillaume‐Gentil, Orane;
Potthoff, Eva;
Ossola, Dario;
Dörig, Pablo;
Zambelli, Tomaso;
Vorholt, Julia A.

Publication type:

Article

Force-Controlled Fluidic Injection into Single Cell Nuclei.

Published in:

Small, 2013, v. 9, n. 11, p. 1904, doi. 10.1002/smll.201202276

By:

Guillaume‐Gentil, Orane;
Potthoff, Eva;
Ossola, Dario;
Dörig, Pablo;
Zambelli, Tomaso;
Vorholt, Julia A.

Publication type:

Article

eMZed: an open source framework in Python for rapid and interactive development of LC/MS data analysis workflows.

Published in:

Bioinformatics, 2013, v. 29, n. 7, p. 963, doi. 10.1093/bioinformatics/btt080

By:

Kiefer, Patrick;
Schmitt, Uwe;
Vorholt, Julia A.

Publication type:

Article

Spatial distribution analyses of natural phyllosphere-colonizing bacteria on A rabidopsis thaliana revealed by fluorescence in situ hybridization.

Published in:

Environmental Microbiology, 2014, v. 16, n. 7, p. 2329, doi. 10.1111/1462-2920.12482

By:

Remus ‐ Emsermann, Mitja N. P.;
Lücker, Sebastian;
Müller, Daniel B.;
Potthoff, Eva;
Daims, Holger;
Vorholt, Julia A.

Publication type:

Article

Microbial rhodopsins on leaf surfaces of terrestrial plants.

Published in:

Environmental Microbiology, 2012, v. 14, n. 1, p. 140, doi. 10.1111/j.1462-2920.2011.02554.x

By:

Atamna-Ismaeel, Nof;
Finkel, Omri M.;
Glaser, Fabian;
Sharon, Itai;
Schneider, Ron;
Post, Anton F.;
Spudich, John L.;
von Mering, Christian;
Vorholt, Julia A.;
Iluz, David;
Béjà, Oded;
Belkin, Shimshon

Publication type:

Article

A Proteomic Approach of Bradyrhizobium/Aeschynomene Root and Stem Symbioses Reveals the Importance of the fixA Locus for Symbiosis.

Published in:

International Journal of Molecular Sciences, 2014, v. 15, n. 3, p. 3660, doi. 10.3390/ijms15033660

By:

Delmotte, Nathanael;
Mondy, Samuel;
Alunni, Benoit;
Fardoux, Joel;
Chaintreuil, Clémence;
Vorholt, Julia A.;
Giraud, Eric;
Gourion, Benjamin

Publication type:

Article

ScalaFlux: A scalable approach to quantify fluxes in metabolic subnetworks.

Published in:

PLoS Computational Biology, 2020, v. 16, n. 4, p. 1, doi. 10.1371/journal.pcbi.1007799

By:

Millard, Pierre;
Schmitt, Uwe;
Kiefer, Patrick;
Vorholt, Julia A.;
Heux, Stéphanie;
Portais, Jean-Charles

Publication type:

Article

The Enigmatic Planctomycetes May Hold a Key to the Origins of Methanogenesis and Methylotrophy.

Published in:

Molecular Biology & Evolution, 2004, v. 21, n. 7, p. 1234, doi. 10.1093/molbev/msh113

By:

Chistoserdova, Ludmila;
Jenkins, Cheryl;
Kalyuzhnaya, Marina G.;
Marx, Christopher J.;
Lapidus, Alla;
Vorholt, Julia A.;
Staley, James T.;
Lidstrom, Mazy E.

Publication type:

Article

Proteomic analysis of the thermophilic methylotroph Bacillus methanolicus MGA3.

Published in:

Proteomics, 2014, v. 14, n. 6, p. 725, doi. 10.1002/pmic.201300515

By:

Müller, Jonas E. N.;
Litsanov, Boris;
Bortfeld‐Miller, Miriam;
Trachsel, Christian;
Grossmann, Jonas;
Brautaset, Trygve;
Vorholt, Julia A.

Publication type:

Article

Bacterial adaptation to life in association with plants - A proteomic perspective from culture to in situ conditions.

Published in:

Proteomics, 2011, v. 11, n. 15, p. 3086, doi. 10.1002/pmic.201000818

By:

Knief, Claudia;
Delmotte, Nathanaël;
Vorholt, Julia A.

Publication type:

Article

An integrated proteomics and transcriptomics reference data set provides new insights into the Bradyrhizobium japonicum bacteroid metabolism in soybean root nodules.

Published in:

Proteomics, 2010, v. 10, n. 7, p. 1391, doi. 10.1002/pmic.200900710

By:

Delmotte, Nathanaël;
Ahrens, Christian H.;
Knief, Claudia;
Qeli, Ermir;
Koch, Marion;
Fischer, Hans-Martin;
Vorholt, Julia A.;
Hennecke, Hauke;
Pessi, Gabriella

Publication type:

Article

mBARq: a versatile and user-friendly framework for the analysis of DNA barcodes from transposon insertion libraries, knockout mutants, and isogenic strain populations.

Published in:

Bioinformatics, 2024, v. 40, n. 2, p. 1, doi. 10.1093/bioinformatics/btae078

By:

Sintsova, Anna;
Ruscheweyh, Hans-Joachim;
Field, Christopher M;
Feer, Lilith;
Nguyen, Bidong D;
Daniel, Benjamin;
Hardt, Wolf-Dietrich;
Vorholt, Julia A;
Sunagawa, Shinichi

Publication type:

Article

Molecular Basis of Growth Inhibition by Acetate of an Adenylate Cyclase-Deficient Mutant of Corynebacterium glutamicum.

Published in:

Frontiers in Microbiology, 2020, p. 1, doi. 10.3389/fmicb.2020.00087

By:

Wolf, Natalie;
Bussmann, Michael;
Koch-Koerfges, Abigail;
Katcharava, Nino;
Schulte, Julia;
Polen, Tino;
Hartl, Johannes;
Vorholt, Julia A.;
Baumgart, Meike;
Bott, Michael

Publication type:

Article

In vitro activation of NAD‐dependent alcohol dehydrogenases by Nudix hydrolases is more widespread than assumed.

Published in:

FEBS Letters, 2014, v. 588, n. 17, p. 2993, doi. 10.1016/j.febslet.2014.06.008

By:

Ochsner, Andrea M.;
Müller, Jonas E.N.;
Mora, Carlos A.;
Vorholt, Julia A.

Publication type:

Article

Methanol-dependent Escherichia coli strains with a complete ribulose monophosphate cycle.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. N.PAG, doi. 10.1038/s41467-020-19235-5

By:

Keller, Philipp;
Noor, Elad;
Meyer, Fabian;
Reiter, Michael A.;
Anastassov, Stanislav;
Kiefer, Patrick;
Vorholt, Julia A.

Publication type:

Article

Mutation in the C-Di-AMP Cyclase dacA Affects Fitness and Resistance of Methicillin Resistant Staphylococcus aureus.

Published in:

PLoS ONE, 2013, v. 8, n. 8, p. 1, doi. 10.1371/journal.pone.0073512

By:

Dengler, Vanina;
McCallum, Nadine;
Kiefer, Patrick;
Christen, Philipp;
Patrignani, Andrea;
Vorholt, Julia A.;
Berger-Bächi, Brigitte;
Senn, Maria M.

Publication type:

Article

Methylotrophic Bacillus methanolicus Encodes Two Chromosomal and One Plasmid Born NAD+ Dependent Methanol Dehydrogenase Paralogs with Different Catalytic and Biochemical Properties.

Published in:

PLoS ONE, 2013, v. 8, n. 3, p. 1, doi. 10.1371/journal.pone.0059188

By:

Krog, Anne;
Heggeset, Tonje M. B.;
Müller, Jonas E. N.;
Kupper, Christiane E.;
Schneider, Olha;
Vorholt, Julia A.;
Ellingsen, Trond E.;
Brautaset, Trygve

Publication type:

Article

Rapid and Serial Quantification of Adhesion Forces of Yeast and Mammalian Cells.

Published in:

PLoS ONE, 2012, v. 7, n. 12, p. 1, doi. 10.1371/journal.pone.0052712

By:

Potthoff, Eva;
Guillaume-Gentil, Orane;
Ossola, Dario;
Polesel-Maris, Jérôme;
LeibundGut-Landmann, Salomé;
Zambelli, Tomaso;
Vorholt, Julia A.

Publication type:

Article