Works by Vollmers, John

Results: 23

Targeted Cell Sorting Combined With Single Cell Genomics Captures Low Abundant Microbial Dark Matter With Higher Sensitivity Than Metagenomics.

Published in:

Frontiers in Microbiology, 2020, v. 11, p. 1, doi. 10.3389/fmicb.2020.01377

By:

Dam, Hang T.;
Vollmers, John;
Sobol, Morgan S.;
Cabezas, Angela;
Kaster, Anne-Kristin

Publication type:

Article

A survey of extended-spectrum beta-lactamase-producing Enterobacteriaceae in urban wetlands in southwestern Nigeria as a step towards generating prevalence maps of antimicrobial resistance.

Published in:

PLoS ONE, 2020, v. 15, n. 3, p. 1, doi. 10.1371/journal.pone.0229451

By:

Adelowo, Olawale Olufemi;
Ikhimiukor, Odion Osebhahiemen;
Knecht, Camila;
Vollmers, John;
Bhatia, Mudit;
Kaster, Anne-Kirstin;
Müller, Jochen A.

Publication type:

Article

Printing Microbial Dark Matter: Using Single Cell Dispensing and Genomics to Investigate the Patescibacteria/Candidate Phyla Radiation.

Published in:

Frontiers in Microbiology, 2021, v. 12, p. 1, doi. 10.3389/fmicb.2021.635506

By:

Wiegand, Sandra;
Dam, Hang T.;
Riba, Julian;
Vollmers, John;
Kaster, Anne-Kristin

Publication type:

Article

Communal metabolism by Methylococcaceae and Methylophilaceae is driving rapid aerobic methane oxidation in sediments of a shallow seep near Elba, Italy.

Published in:

Environmental Microbiology, 2019, v. 21, n. 10, p. 3780, doi. 10.1111/1462-2920.14728

By:

Taubert, Martin;
Grob, Carolina;
Crombie, Andrew;
Howat, Alexandra M.;
Burns, Oliver J.;
Weber, Miriam;
Lott, Christian;
Kaster, Anne‐Kristin;
Vollmers, John;
Jehmlich, Nico;
von Bergen, Martin;
Chen, Yin;
Murrell, John Colin

Publication type:

Article

Unravelling the Identity, Metabolic Potential and Global Biogeography of the Atmospheric Methane‐Oxidizing Upland Soil Cluster α.

Published in:

Environmental Microbiology, 2018, v. 20, n. 3, p. 1016, doi. 10.1111/1462-2920.14036

By:

Pratscher, Jennifer;
Vollmers, John;
Wiegand, Sandra;
Dumont, Marc G.;
Kaster, Anne‐Kristin

Publication type:

Article

Diversity and abundance of Gram positive bacteria in a tidal flat ecosystem.

Published in:

Environmental Microbiology, 2007, v. 9, n. 7, p. 1810, doi. 10.1111/j.1462-2920.2007.01302.x

By:

Stevens, Heike;
Brinkhoff, Thorsten;
Rink, Beate;
Vollmers, John;
Simon, Meinhard

Publication type:

Article

Genome Mining and Comparative Genome Analysis Revealed Niche-Specific Genome Expansion in Antibacterial Bacillus pumilus Strain SF-4.

Published in:

Genes, 2021, v. 12, n. 7, p. 1060, doi. 10.3390/genes12071060

By:

Iqbal, Sajid;
Vollmers, John;
Janjua, Hussnain Ahmed

Publication type:

Article

Comparing and Evaluating Metagenome Assembly Tools from a Microbiologist’s Perspective - Not Only Size Matters!

Published in:

PLoS ONE, 2017, v. 12, n. 1, p. 1, doi. 10.1371/journal.pone.0169662

By:

Vollmers, John;
Wiegand, Sandra;
Kaster, Anne-Kristin

Publication type:

Article

Single-cell genomics based on Raman sorting reveals novel carotenoid-containing bacteria in the Red Sea.

Published in:

Microbial Biotechnology, 2017, v. 10, n. 1, p. 125, doi. 10.1111/1751-7915.12420

By:

Song, Yizhi;
Kaster, Anne-Kristin;
Vollmers, John;
Song, Yanqing;
Davison, Paul A.;
Frentrup, Martinique;
Preston, Gail M.;
Thompson, Ian P.;
Murrell, J. Colin;
Yin, Huabing;
Hunter, C. Neil;
Huang, Wei E.

Publication type:

Article

First shotgun metagenomics study of Juan de Fuca deep-sea sediments reveals distinct microbial communities above, within, between, and below sulfate methane transition zones.

Published in:

Frontiers in Microbiology, 2023, p. 01, doi. 10.3389/fmicb.2023.1241810

By:

Metze, Felix;
Vollmers, John;
Lenk, Florian;
Kaster, Anne-Kristin

Publication type:

Article

Untangling Genomes of Novel Planctomycetal and Verrucomicrobial Species from Monterey Bay Kelp Forest Metagenomes by Refined Binning.

Published in:

Frontiers in Microbiology, 2017, v. 8, p. 1, doi. 10.3389/fmicb.2017.00472

By:

Vollmers, John;
Frentrup, Martinique;
Rast, Patrick;
Jogler, Christian;
Kaster, Anne-Kristin

Publication type:

Article

Fuerstia marisgermanicae gen. nov., sp. nov., an Unusual Member of the Phylum Planctomycetes from the German Wadden Sea.

Published in:

Frontiers in Microbiology, 2016, v. 7, p. 1, doi. 10.3389/fmicb.2016.02079

By:

Kohn, Timo;
Heuer, Anja;
Jogler, Mareike;
Vollmers, John;
Boedeker, Christian;
Bunk, Boyke;
Rast, Patrick;
Borchert, Daniela;
Glöckner, Ines;
Freese, Heike M.;
Klenk, Hans-Peter;
Overmann, Jörg;
Kaster, Anne-Kristin;
Rohde, Manfred;
Wiegand, Sandra;
Jogler, Christian

Publication type:

Article

Adaptation of an abundant Roseobacter RCA organism to pelagic systems revealed by genomic and transcriptomic analyses.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2015, v. 9, n. 2, p. 371, doi. 10.1038/ismej.2014.134

By:

Voget, Sonja;
Wemheuer, Bernd;
Brinkhoff, Thorsten;
Vollmers, John;
Dietrich, Sascha;
Giebel, Helge-Ansgar;
Beardsley, Christine;
Sardemann, Carla;
Bakenhus, Insa;
Billerbeck, Sara;
Daniel, Rolf;
Simon, Meinhard

Publication type:

Article

Biogeography and phylogenetic diversity of a cluster of exclusively marine myxobacteria.

Published in:

ISME Journal: Multidisciplinary Journal of Microbial Ecology, 2012, v. 6, n. 6, p. 1260, doi. 10.1038/ismej.2011.190

By:

Brinkhoff, Thorsten;
Fischer, Doreen;
Vollmers, John;
Voget, Sonja;
Beardsley, Christine;
Thole, Sebastian;
Mussmann, Marc;
Kunze, Brigitte;
Wagner-Döbler, Irene;
Daniel, Rolf;
Simon, Meinhard

Publication type:

Article

Isolation, Biosynthesis and Chemical Modifications of Rubterolones A-F: Rare Tropolone Alkaloids from Actinomadura sp. 5-2.

Published in:

Chemistry - A European Journal, 2017, v. 23, n. 39, p. 9338, doi. 10.1002/chem.201701005

By:

Guo, Huijuan;
Benndorf, René;
Leichnitz, Daniel;
Klassen, Jonathan L.;
Vollmers, John;
Görls, Helmar;
Steinacker, Matthias;
Weigel, Christiane;
Dahse, Hans‐Martin;
Kaster, Anne‐Kristin;
de Beer, Z. Wilhelm;
Poulsen, Michael;
Beemelmanns, Christine

Publication type:

Article

Detection of the carbapenemase gene bla<sub>VIM-5</sub> in members of the Pseudomonas putida group isolated from polluted Nigerian wetlands.

Published in:

Scientific Reports, 2018, v. 8, n. 1, p. 1, doi. 10.1038/s41598-018-33535-3

By:

Adelowo, Olawale O.;
Vollmers, John;
Mäusezahl, Ines;
Kaster, Anne-Kristin;
Müller, Jochen A.

Publication type:

Article

How clear is our current view on microbial dark matter? (Re-)assessing public MAG & SAG datasets with MDMcleaner.

Published in:

Nucleic Acids Research, 2022, v. 50, n. 13, p. e76, doi. 10.1093/nar/gkac294

By:

Vollmers, John;
Wiegand, Sandra;
Lenk, Florian;
Kaster, Anne-Kristin

Publication type:

Article

Corrigendum: Fuerstia marisgermanicae gen. nov., sp. nov., an Unusual Member of the Phylum Planctomycetes From the German Wadden Sea.

Published in:

2019

By:

Kohn, Timo;
Heuer, Anja;
Jogler, Mareike;
Vollmers, John;
Boedeker, Christian;
Bunk, Boyke;
Rast, Patrick;
Borchert, Daniela;
Glöckner, Ines;
Freese, Heike M.;
Klenk, Hans-Peter;
Overmann, Jörg;
Kaster, Anne-Kristin;
Rohde, Manfred;
Wiegand, Sandra;
Jogler, Christian

Publication type:

Correction Notice

Poles Apart: Arctic and Antarctic <i>Octadecabacter</i> strains Share High Genome Plasticity and a New Type of Xanthorhodopsin

Published in:

PLoS ONE, 2013, v. 8, n. 5, p. 1, doi. 10.1371/journal.pone.0063422

By:

Vollmers, John;
Voget, Sonja;
Dietrich, Sascha;
Gollnow, Kathleen;
Smits, Maike;
Meyer, Katja;
Brinkhoff, Thorsten;
Simon, Meinhard;
Daniel, Rolf

Publication type:

Article

An Ancient Pathway Combining Carbon Dioxide Fixation with the Generation and Utilization of a Sodium Ion Gradient for ATP Synthesis.

Published in:

PLoS ONE, 2012, v. 7, n. 3, p. 1, doi. 10.1371/journal.pone.0033439

By:

Poehlein, Anja;
Schmidt, Silke;
Kaster, Anne-Kristin;
Goenrich, Meike;
Vollmers, John;
Thürmer, Andrea;
Bertsch, Johannes;
Schuchmann, Kai;
Voigt, Birgit;
Hecker, Michael;
Daniel, Rolf;
Thauer, Rudolf K.;
Gottschalk, Gerhard;
Müller, Volker

Publication type:

Article

No evidence for a bovine mastitis Escherichia coli pathotype.

Published in:

BMC Genomics, 2017, v. 18, p. 1, doi. 10.1186/s12864-017-3739-x

By:

Leimbach, Andreas;
Poehlein, Anja;
Vollmers, John;
Görlich, Dennis;
Daniel, Rolf;
Dobrindt, Ulrich

Publication type:

Article

Taxonomic Re-Classification and Expansion of the Phylum Chloroflexota Based on over 5000 Genomes and Metagenome-Assembled Genomes.

Published in:

Microorganisms, 2023, v. 11, n. 10, p. 2612, doi. 10.3390/microorganisms11102612

By:

Wiegand, Sandra;
Sobol, Morgan;
Schnepp-Pesch, Luca Kristina;
Yan, Geng;
Iqbal, Sajid;
Vollmers, John;
Müller, Jochen A.;
Kaster, Anne-Kristin

Publication type:

Article

Analysis of Bacterial Communities on North Sea Macroalgae and Characterization of the Isolated Planctomycetes Adhaeretor mobilis gen. nov., sp. nov., Roseimaritima multifibrata sp. nov., Rosistilla ulvae sp. nov. and Rubripirellula lacrimiformis sp. nov.

Published in:

Microorganisms, 2021, v. 9, n. 7, p. 1494, doi. 10.3390/microorganisms9071494

By:

Wiegand, Sandra;
Rast, Patrick;
Kallscheuer, Nicolai;
Jogler, Mareike;
Heuer, Anja;
Boedeker, Christian;
Jeske, Olga;
Kohn, Timo;
Vollmers, John;
Kaster, Anne-Kristin;
Quast, Christian;
Glöckner, Frank Oliver;
Rohde, Manfred;
Jogler, Christian

Publication type:

Article