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Mathematical models of cystic fibrosis as a systemic disease.
- Published in:
- WIREs: Mechanisms of Disease, 2023, v. 15, n. 6, p. 1, doi. 10.1002/wsbm.1625
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- Article
What's next for computational systems biology?
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- Frontiers in Systems Biology, 2023, v. 3, p. 1, doi. 10.3389/fsysb.2023.1250228
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- Article
A dynamic compartment model for xylem loading and long-distance transport of iron explains the effect of kanamycin on metal uptake in Arabidopsis.
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- Frontiers in Plant Science, 2023, p. 1, doi. 10.3389/fpls.2023.1147598
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- Article
Methods of quantifying interactions among populations using Lotka-Volterra models.
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- Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.1021897
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- Article
Perspective: Systems biology beyond biology.
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- Frontiers in Systems Biology, 2022, v. 2, p. 1, doi. 10.3389/fsysb.2022.987135
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- Article
Emergence and Enhancement of Ultrasensitivity through Posttranslational Modulation of Protein Stability.
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- Biomolecules (2218-273X), 2021, v. 11, n. 11, p. 1741, doi. 10.3390/biom11111741
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- Article
A model of dopamine and serotonin-kynurenine metabolism in cortisolemia: Implications for depression.
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- PLoS Computational Biology, 2021, v. 17, n. 5, p. 1, doi. 10.1371/journal.pcbi.1008956
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- Article
Mechanistic Model of Signaling Dynamics Across an Epithelial Mesenchymal Transition.
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- Frontiers in Physiology, 2020, v. 11, p. N.PAG, doi. 10.3389/fphys.2020.579117
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- Article
ENaC regulation by phospholipids and DGK explained through mathematical modeling.
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- Scientific Reports, 2020, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41598-020-70630-w
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- Article
Agent-Based Modeling and Simulation in Mathematics and Biology Education.
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- Bulletin of Mathematical Biology, 2020, v. 82, n. 8, p. 1, doi. 10.1007/s11538-020-00778-z
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- Article
Comparison of physical examination and laboratory data between a clinical study and electronic health records.
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- PLoS ONE, 2020, v. 15, n. 7, p. 1, doi. 10.1371/journal.pone.0236189
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- Article
Separable Nonlinear Least-Squares Parameter Estimation for Complex Dynamic Systems.
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- Complexity, 2020, p. 1, doi. 10.1155/2020/6403641
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- Article
Model-based Comparisons of the Abundance Dynamics of Bacterial Communities in Two Lakes.
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- Scientific Reports, 2020, v. 10, n. 1, p. 1, doi. 10.1038/s41598-020-58769-y
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- Article
Perspective: Dimensions of the scientific method.
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- PLoS Computational Biology, 2019, v. 15, n. 9, p. 1, doi. 10.1371/journal.pcbi.1007279
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- Article
Metrics for regulated biochemical pathway systems.
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- Bioinformatics, 2019, v. 35, n. 12, p. 2118, doi. 10.1093/bioinformatics/bty942
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- Article
Agent-based modeling of morphogenetic systems: Advantages and challenges.
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- PLoS Computational Biology, 2019, v. 15, n. 3, p. 1, doi. 10.1371/journal.pcbi.1006577
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- Article
Analysis of erythrocyte dynamics in Rhesus macaque monkeys during infection with Plasmodium cynomolgi.
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- Malaria Journal, 2018, v. 17, n. 1, p. N.PAG, doi. 10.1186/s12936-018-2560-6
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- Article
A dynamic model of lignin biosynthesis in Brachypodium distachyon.
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- Biotechnology for Biofuels, 2018, v. 11, n. 1, p. N.PAG, doi. 10.1186/s13068-018-1241-6
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- Article
Mathematical models of lignin biosynthesis.
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- Biotechnology for Biofuels, 2018, v. 11, p. 1, doi. 10.1186/s13068-018-1028-9
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- Article
Improving Bioenergy Crops through Dynamic Metabolic Modeling.
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- Processes, 2017, v. 5, n. 4, p. 61, doi. 10.3390/pr5040061
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- Article
A model of Plasmodium vivax concealment based on Plasmodium cynomolgi infections in Macaca mulatta.
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- Malaria Journal, 2017, v. 16, p. 1, doi. 10.1186/s12936-017-2008-4
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- Article
Stepwise inference of likely dynamic flux distributions from metabolic time series data.
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- Bioinformatics, 2017, v. 33, n. 14, p. 2165, doi. 10.1093/bioinformatics/btx126
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- Article
Effects of Storage Time on Glycolysis in Donated Human Blood Units.
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- Metabolites (2218-1989), 2017, v. 7, n. 2, p. 12, doi. 10.3390/metabo7020012
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- Article
Quantifying the removal of red blood cells in Macaca mulatta during a Plasmodium coatneyi infection.
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- Malaria Journal, 2016, v. 15, p. 1, doi. 10.1186/s12936-016-1465-5
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- Article
Identification of Metabolic Pathway Systems.
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- Frontiers in Genetics, 2016, p. 1, doi. 10.3389/fgene.2016.00006
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- Article
Analysis of the Involvement of Different Ceramide Variants in the Response to Hydroxyurea Stress in Baker's Yeast.
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- PLoS ONE, 2016, v. 11, n. 1, p. 1, doi. 10.1371/journal.pone.0146839
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- Article
Computational inference of the structure and regulation of the lignin pathway in Panicum virgatum.
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- Biotechnology for Biofuels, 2015, v. 8, n. 1, p. 1, doi. 10.1186/s13068-015-0334-8
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- Article
Dynamics of the Heat Stress Response of Ceramides with Different Fatty-Acyl Chain Lengths in Baker’s Yeast.
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- PLoS Computational Biology, 2015, v. 11, n. 8, p. 1, doi. 10.1371/journal.pcbi.1004373
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- Article
150 Years of the Mass Action Law.
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- PLoS Computational Biology, 2015, v. 11, n. 1, p. 1, doi. 10.1371/journal.pcbi.1004012
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- Article
Simulation of the Denitrification Process of Waste Water with a Biochemical Systems Model: A Non-Conventional Approach.
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- International Journal of Chemical Reactor Engineering, 2014, v. 12, n. 2, p. 683, doi. 10.1515/ijcre-2014-0050
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- Article
A Heuristic Model of Alcohol Dependence.
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- PLoS ONE, 2014, v. 9, n. 3, p. 1, doi. 10.1371/journal.pone.0092221
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- Article
Metabolic and Transcriptional Analysis of Acid Stress in <i>Lactococcus lactis</i>, with a Focus on the Kinetics of Lactic Acid Pools.
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- PLoS ONE, 2013, v. 8, n. 7, p. 1, doi. 10.1371/journal.pone.0068470
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- Article
Coordination of Rapid Sphingolipid Responses to Heat Stress in Yeast
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- PLoS Computational Biology, 2013, v. 9, n. 5, p. 1, doi. 10.1371/journal.pcbi.1003078
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- Article
Function and design of the Nox1 system in vascular smooth muscle cells.
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- BMC Systems Biology, 2013, v. 7, n. 1, p. 1, doi. 10.1186/1752-0509-7-20
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- Article
Functional Analysis of Metabolic Channeling and Regulation in Lignin Biosynthesis: A Computational Approach.
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- PLoS Computational Biology, 2012, v. 8, n. 11, p. 1, doi. 10.1371/journal.pcbi.1002769
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- Article
Estimation of dynamic flux profiles from metabolic time series data.
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- BMC Systems Biology, 2012, v. 6, n. 1, p. 84, doi. 10.1186/1752-0509-6-84
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- Article
A feel for systems.
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- Molecular Systems Biology, 2012, v. 8, n. 1, p. 1, doi. 10.1038/msb.2012.41
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- Article
Mathematical Modeling and Validation of the Ergosterol Pathway in Saccharomyces cerevisiae.
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- PLoS ONE, 2011, v. 6, n. 12, p. 1, doi. 10.1371/journal.pone.0028344
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- Article
Integrative Analysis of Transgenic Alfalfa (Medicago sativa L.) Suggests New Metabolic Control Mechanisms for Monolignol Biosynthesis.
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- PLoS Computational Biology, 2011, v. 7, n. 5, p. 1, doi. 10.1371/journal.pcbi.1002047
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- Article
Statistical Inference Methods for Sparse Biological Time Series Data.
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- BMC Systems Biology, 2011, v. 5, n. 1, p. 57, doi. 10.1186/1752-0509-5-57
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- Article
Systems Analysis of the Role of Bone Morphogenic Protein 4 in Endothelial Inflammation.
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- Annals of Biomedical Engineering, 2010, v. 38, n. 2, p. 291, doi. 10.1007/s10439-009-9822-y
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- Article
The role of systems modeling in drug discovery and predictive health.
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- 2010
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- Abstract
The internal state of medium spiny neurons varies in response to different input signals.
- Published in:
- BMC Systems Biology, 2010, v. 4, p. 26, doi. 10.1186/1752-0509-4-26
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- Article
Impact of Delays and Noise on Dopamine Signal Transduction.
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- In Silico Biology, 2010, v. 10, n. 1/2, p. 67, doi. 10.3233/ISB-2010-0413
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- Article
Computational analysis of determinants of dopamine (DA) dysfunction in DA nerve terminals.
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- Synapse, 2009, v. 63, n. 12, p. 1133, doi. 10.1002/syn.20686
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- Article
Estimating parameters for generalized mass action models with connectivity information.
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- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-140
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- Article
Identification of neutral biochemical network models from time series data.
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- BMC Systems Biology, 2009, v. 3, p. 1, doi. 10.1186/1752-0509-3-47
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- Publication type:
- Article
CONSTRUCTION AND CUSTOMIZATION OF STABLE OSCILLATION MODELS IN BIOLOGY.
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- Journal of Biological Systems, 2008, v. 16, n. 4, p. 463, doi. 10.1142/S0218339008002502
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- Publication type:
- Article
System estimation from metabolic time-series data.
- Published in:
- Bioinformatics, 2008, v. 24, n. 21, p. 2505, doi. 10.1093/bioinformatics/btn470
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- Article
Computational Systems Analysis of Dopamine Metabolism.
- Published in:
- PLoS ONE, 2008, v. 3, n. 6, p. 1, doi. 10.1371/journal.pone.0002444
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- Article