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Quantitative Aspect of Bacillus subtilis σ B Regulatory Network on a Proteome Level—A Computational Simulation.
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- Biology (2079-7737), 2024, v. 13, n. 8, p. 614, doi. 10.3390/biology13080614
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- Article
Genexp—a genetic network simulation environment.
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- Bioinformatics, 2002, v. 18, n. 10, p. 1400
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- Article
Measurement variation determines the gene network topology reconstructed from experimental data: a case study of the yeast cyclin network.
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- FASEB Journal, 2010, v. 24, n. 9, p. 3468, doi. 10.1096/fj.10-160515
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- Article
Changes in activity of metabolic and regulatory pathways during germination of S. coelicolor.
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- BMC Genomics, 2014, v. 15, n. 1, p. 3367, doi. 10.1186/1471-2164-15-1173
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- Article
Biocomputational prediction of small non-coding RNAs in Streptomyces.
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- BMC Genomics, 2008, v. 9, p. 1, doi. 10.1186/1471-2164-9-217
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A Comparison of Protein and mRNA Expression during Development of the Soil Dwelling Prokaryote (S. coelicolor).
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- Proteomics, 2020, v. 20, n. 24, p. 1, doi. 10.1002/pmic.202070135
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A Comparison of Protein and mRNA Expression during Development of the Soil Dwelling Prokaryote (S. coelicolor).
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- Proteomics, 2020, v. 20, n. 14, p. 1, doi. 10.1002/pmic.202000032
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rPredictorDB: a predictive database of individual secondary structures of RNAs and their formatted plots.
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- Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/baz047
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Supervised inference of gene-regulatory networks.
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- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-2
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rboAnalyzer webserver: web service for non-coding RNA characterization from NCBI BLAST output.
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- Bioinformatics, 2021, v. 37, n. 17, p. 2755, doi. 10.1093/bioinformatics/btab073
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Global Features of Gene Expression on the Proteome and Transcriptome Levels in <i>S. coelicolor</i> during Germination.
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- PLoS ONE, 2013, v. 8, n. 9, p. 1, doi. 10.1371/journal.pone.0072842
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Virtual Mutagenesis of the Yeast Cyclins Genetic Network Reveals Complex Dynamics of Transcriptional Control Networks.
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- PLoS ONE, 2011, v. 6, n. 4, p. 1, doi. 10.1371/journal.pone.0018827
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- Article
Effect of protein degradation on spot M<sub>r</sub> distribution in 2-D gels - a case study of proteolysis during development of Streptomyces coelicolor cultures.
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- Proteomics, 2008, v. 8, n. 12, p. 2371, doi. 10.1002/pmic.200701075
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Comparative analysis of gene expression on mRNA and protein level during development of Streptomyces cultures by using singular value decomposition.
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- Proteomics, 2007, v. 7, n. 21, p. 3853, doi. 10.1002/pmic.200700005
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The iron-regulated transcriptome and proteome of Neisseria meningitidis serogroup C.
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- Proteomics, 2006, v. 6, n. 23, p. 6194, doi. 10.1002/pmic.200600312
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Systems level analysis of protein synthesis patterns associated with bacterial growth and metabolic transitions.
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- Proteomics, 2006, v. 6, n. 3, p. 785, doi. 10.1002/pmic.200500206
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Activation and expression of proteins during synchronous germination of aerial spores of Streptomyces granaticolor.
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- Proteomics, 2004, v. 4, n. 12, p. 3864, doi. 10.1002/pmic.200400818
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Proteome of Caulobacter crescentus cell cycle publicly accessible on SWICZ server.
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- Proteomics, 2003, v. 3, n. 10, p. 1874, doi. 10.1002/pmic.200300559
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Kinetic Modeling and Meta-Analysis of the Bacillus subtilis SigB Regulon during Spore Germination and Outgrowth.
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- Microorganisms, 2021, v. 9, n. 1, p. 112, doi. 10.3390/microorganisms9010112
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- Article
Quantitative Aspect of Bacillus subtilis σB Regulatory Network—A Computational Simulation.
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- Biology (2079-7737), 2022, v. 11, n. 12, p. 1729, doi. 10.3390/biology11121729
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- Article
Genexpi: a toolset for identifying regulons and validating gene regulatory networks using time-course expression data.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2138-x
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DNA mapping and kinetic modeling of the HrdB regulon in Streptomyces coelicolor.
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- Nucleic Acids Research, 2019, v. 47, n. 2, p. 621, doi. 10.1093/nar/gky1018
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- Article
Inference of sigma factor controlled networks by using numerical modeling applied to microarray time series data of the germinating prokaryote.
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- Nucleic Acids Research, 2014, v. 42, n. 2, p. 748, doi. 10.1093/nar/gkt917
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An evolutionary conserved pattern of 18S rRNA sequence complementarity to mRNA 5′ UTRs and its implications for eukaryotic gene translation regulation.
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- Nucleic Acids Research, 2013, v. 41, n. 16, p. 7625, doi. 10.1093/nar/gkt548
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Stochastic simulation for the inference of transcriptional control network of yeast cyclins genes.
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- Nucleic Acids Research, 2012, v. 40, n. 15, p. 7096, doi. 10.1093/nar/gks440
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- Article
The suboptimal structures find the optimal RNAs: homology search for bacterial non-coding RNAs using suboptimal RNA structures.
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- Nucleic Acids Research, 2011, v. 39, n. 8, p. 3418, doi. 10.1093/nar/gkq1186
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Numerical modelling of microRNA-mediated mRNA decay identifies novel mechanism of microRNA controlled mRNA downregulation.
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- Nucleic Acids Research, 2010, v. 38, n. 14, p. 4579, doi. 10.1093/nar/gkq220
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- Article
Point pattern matching in the analysis of two-dimensional gel electropherograms.
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- Electrophoresis, 1999, v. 20, n. 18, p. 3483, doi. 10.1002/(SICI)1522-2683(19991201)20:18<3483::AID-ELPS3483>3.0.CO;2-R
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- Article
Adaptive classification of two-dimensional gel electrophoretic spot patterns by neural networks and cluster analysis.
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- Electrophoresis, 1997, v. 18, n. 15, p. 2749, doi. 10.1002/elps.1150181508
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Identification of procaryotic developmental stages by statistical analyses of two-dimensional gel patterns.
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- Electrophoresis, 1997, v. 18, n. 8, p. 1418, doi. 10.1002/elps.1150180817
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The use of protein synthesis elongation factor EF-Tu as internal calibration standard in two-dimensional electrophoretic studies of differentiation in Streptomyces.
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- Electrophoresis, 1994, v. 15, n. 1, p. 1198, doi. 10.1002/elps.11501501181
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Quantitative analysis of gel electrophoretograms by image analysis and least squares modeling.
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- Electrophoresis, 1993, v. 14, n. 1, p. 601, doi. 10.1002/elps.1150140195
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rboAnalyzer: A Software to Improve Characterization of Non-coding RNAs From Sequence Database Search Output.
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- Frontiers in Genetics, 2020, v. 11, p. 1, doi. 10.3389/fgene.2020.00675
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Nonlinear differential equation model for quantification of transcriptional regulation applied to microarray data of Saccharomyces cerevisiae.
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- Nucleic Acids Research, 2007, v. 35, n. 1, p. 279, doi. 10.1093/nar/gkl1001
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- Article
σ<sup>E</sup> of Streptomyces coelicolor can function both as a direct activator or repressor of transcription.
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- Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-023-05716-y
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- Article
σ<sup>E</sup> of Streptomyces coelicolor can function both as a direct activator or repressor of transcription.
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- Communications Biology, 2024, v. 7, n. 1, p. 1, doi. 10.1038/s42003-023-05716-y
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- Article
Proteomic studies of diauxic lag in the differentiating prokaryote Streptomyces coelicolor reveal a regulatory network of stress-induced proteins and central metabolic enzymes.
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- Molecular Microbiology, 2003, v. 48, n. 5, p. 1289, doi. 10.1046/j.1365-2958.2003.03529.x
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Developmental control of the heat-shock stress regulon in Streptomyces coelicolor.
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- Molecular Microbiology, 1995, v. 17, n. 4, p. 737, doi. 10.1111/j.1365-2958.1995.mmi_17040737.x
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