Works by Vogel, Christine

Results: 38

K63 polyubiquitination is a new modulator of the oxidative stress response.

Published in:

Nature Structural & Molecular Biology, 2015, v. 22, n. 2, p. 116, doi. 10.1038/nsmb.2955

By:

Silva, Gustavo M;
Finley, Daniel;
Vogel, Christine

Publication type:

Article

A protein‐centric approach for exome variant aggregation enables sensitive association analysis with clinical outcomes.

Published in:

Human Mutation, 2020, v. 41, n. 5, p. 934, doi. 10.1002/humu.23979

By:

Li, Ginny X. H.;
Munro, Dan;
Fermin, Damian;
Vogel, Christine;
Choi, Hyungwon

Publication type:

Article

Mining gene functional networks to improve mass-spectrometry-based protein identification.

Published in:

Bioinformatics, 2009, v. 25, n. 22, p. 2955, doi. 10.1093/bioinformatics/btp461

By:

Ramakrishnan, Smriti R.;
Vogel, Christine;
Taejoon Kwon;
Penalva, Luiz O.;
Marcotte, Edward M.;
Miranker, Daniel P.

Publication type:

Article

Integrating shotgun proteomics and mRNA expression data to improve protein identification.

Published in:

Bioinformatics, 2009, v. 25, n. 11, p. 1397, doi. 10.1093/bioinformatics/btp168

By:

Smriti R. Ramakrishnan;
Christine Vogel;
John T. Prince;
Zhihua Li;
Luiz O. Penalva;
Margaret Myers;
Edward M. Marcotte;
Daniel P. Miranker;
Rong Wang

Publication type:

Article

Author Correction: Integrated multi-omics analysis of RB-loss identifies widespread cellular programming and synthetic weaknesses.

Published in:

2021

By:

Rajasekaran, Swetha;
Siddiqui, Jalal;
Rakijas, Jessica;
Nicolay, Brandon;
Lin, Chenyu;
Khan, Eshan;
Patel, Rahi;
Morris, Robert;
Wyler, Emanuel;
Boukhali, Myriam;
Balasubramanyam, Jayashree;
Ranjith Kumar, R.;
Van Rechem, Capucine;
Vogel, Christine;
Elchuri, Sailaja V.;
Landthaler, Markus;
Obermayer, Benedikt;
Haas, Wilhelm;
Dyson, Nicholas;
Miles, Wayne

Publication type:

Correction Notice

Integrated multi-omics analysis of RB-loss identifies widespread cellular programming and synthetic weaknesses.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02495-2

By:

Rajasekaran, Swetha;
Siddiqui, Jalal;
Rakijas, Jessica;
Nicolay, Brandon;
Lin, Chenyu;
Khan, Eshan;
Patel, Rahi;
Morris, Robert;
Wyler, Emanuel;
Boukhali, Myriam;
Balasubramanyam, Jayashree;
Ranjith Kumar, R.;
Van Rechem, Capucine;
Vogel, Christine;
Elchuri, Sailaja V.;
Landthaler, Markus;
Obermayer, Benedikt;
Haas, Wilhelm;
Dyson, Nicholas;
Miles, Wayne

Publication type:

Article

Integrated multi-omics analysis of RB-loss identifies widespread cellular programming and synthetic weaknesses.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02495-2

By:

Rajasekaran, Swetha;
Siddiqui, Jalal;
Rakijas, Jessica;
Nicolay, Brandon;
Lin, Chenyu;
Khan, Eshan;
Patel, Rahi;
Morris, Robert;
Wyler, Emanuel;
Boukhali, Myriam;
Balasubramanyam, Jayashree;
Ranjith Kumar, R.;
Van Rechem, Capucine;
Vogel, Christine;
Elchuri, Sailaja V.;
Landthaler, Markus;
Obermayer, Benedikt;
Haas, Wilhelm;
Dyson, Nicholas;
Miles, Wayne

Publication type:

Article

Integrated multi-omics analysis of RB-loss identifies widespread cellular programming and synthetic weaknesses.

Published in:

Communications Biology, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s42003-021-02495-2

By:

Rajasekaran, Swetha;
Siddiqui, Jalal;
Rakijas, Jessica;
Nicolay, Brandon;
Lin, Chenyu;
Khan, Eshan;
Patel, Rahi;
Morris, Robert;
Wyler, Emanuel;
Boukhali, Myriam;
Balasubramanyam, Jayashree;
Ranjith Kumar, R.;
Van Rechem, Capucine;
Vogel, Christine;
Elchuri, Sailaja V.;
Landthaler, Markus;
Obermayer, Benedikt;
Haas, Wilhelm;
Dyson, Nicholas;
Miles, Wayne

Publication type:

Article

PECAplus: statistical analysis of time-dependent regulatory changes in dynamic single-omics and dual-omics experiments.

Published in:

NPJ Systems Biology & Applications, 2018, v. 4, n. 1, p. N.PAG, doi. 10.1038/s41540-017-0040-1

By:

Teo, Guoshou;
Bin Zhang, Yun;
Vogel, Christine;
Choi, Hyungwon

Publication type:

Article

iOmicsPASS: network-based integration of multiomics data for predictive subnetwork discovery.

Published in:

NPJ Systems Biology & Applications, 2019, v. 5, n. 1, p. N.PAG, doi. 10.1038/s41540-019-0099-y

By:

Koh, Hiromi W. L.;
Fermin, Damian;
Vogel, Christine;
Choi, Kwok Pui;
Ewing, Rob M.;
Choi, Hyungwon

Publication type:

Article

Duplication, divergence and formation of novel protein topologies.

Published in:

BioEssays, 2006, v. 28, n. 10, p. 973, doi. 10.1002/bies.20474

By:

Vogel, Christine;
Morea, Veronica

Publication type:

Article

Differential dynamics of the mammalian mRNA and protein expression response to misfolding stress.

Published in:

Molecular Systems Biology, 2016, v. 12, n. 1, p. n/a, doi. 10.15252/msb.20156423

By:

Cheng, Zhe;
Teo, Guoshou;
Krueger, Sabrina;
Rock, Tara M;
Koh, Hiromi WL;
Choi, Hyungwon;
Vogel, Christine

Publication type:

Article

Translation’s coming of age.

Published in:

Molecular Systems Biology, 2011, v. 7, n. 1, p. 1, doi. 10.1038/msb.2011.33

By:

Vogel, Christine

Publication type:

Article

Sequence signatures and mRNA concentration can explain two-thirds of protein abundance variation in a human cell line.

Published in:

Molecular Systems Biology, 2010, v. 6, n. 1, p. 1, doi. 10.1038/msb.2010.59

By:

Vogel, Christine;
de Sousa Abreu, Raquel;
Ko, Daijin;
Le, Shu‐Yun;
Shapiro, Bruce A;
Burns, Suzanne C;
Sandhu, Devraj;
Boutz, Daniel R;
Marcotte, Edward M;
Penalva, Luiz O

Publication type:

Article

Complex changes in serum protein levels in COVID-19 convalescents.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-54534-7

By:

Pushalkar, Smruti;
Wu, Shaohuan;
Maity, Shuvadeep;
Pressler, Matthew;
Rendleman, Justin;
Vitrinel, Burcu;
Jeffery, Lauren;
Abdelhadi, Ryah;
Chen, Mechi;
Ross, Ted;
Carlock, Michael;
Choi, Hyungwon;
Vogel, Christine

Publication type:

Article

Complex changes in serum protein levels in COVID-19 convalescents.

Published in:

Scientific Reports, 2024, v. 14, n. 1, p. 1, doi. 10.1038/s41598-024-54534-7

By:

Pushalkar, Smruti;
Wu, Shaohuan;
Maity, Shuvadeep;
Pressler, Matthew;
Rendleman, Justin;
Vitrinel, Burcu;
Jeffery, Lauren;
Abdelhadi, Ryah;
Chen, Mechi;
Ross, Ted;
Carlock, Michael;
Choi, Hyungwon;
Vogel, Christine

Publication type:

Article

Computational challenges, tools, and resources for analyzing co- and post-transcriptional events in high throughput.

Published in:

Wiley Interdisciplinary Reviews: RNA, 2015, v. 6, n. 3, p. 291, doi. 10.1002/wrna.1274

By:

Bahrami-Samani, Emad;
Vo, Dat T.;
de Araujo, Patricia Rosa;
Vogel, Christine;
Smith, Andrew D.;
Penalva, Luiz O. F.;
Uren, Philip J.

Publication type:

Article

Translation regulation gets its 'omics' moment.

Published in:

Wiley Interdisciplinary Reviews: RNA, 2013, v. 4, n. 6, p. 617, doi. 10.1002/wrna.1173

By:

Kuersten, Scott;
Radek, Agnes;
Vogel, Christine;
Penalva, Luiz O. F.

Publication type:

Article

Evaluation of determinants of the serological response to the quadrivalent split‐inactivated influenza vaccine.

Published in:

Molecular Systems Biology, 2022, v. 18, n. 5, p. 1, doi. 10.15252/msb.202110724

By:

Wu, Shaohuan;
Ross, Ted M;
Carlock, Michael A;
Ghedin, Elodie;
Choi, Hyungwon;
Vogel, Christine

Publication type:

Article

Quantifying gene expression: the importance of being subtle.

Published in:

Molecular Systems Biology, 2016, v. 12, n. 10, p. n/a, doi. 10.15252/msb.20167325

By:

Silva, Gustavo Monteiro;
Vogel, Christine

Publication type:

Article

The (In)dependence of Alternative Splicing and Gene Duplication.

Published in:

PLoS Computational Biology, 2007, v. 3, n. 3, p. 0375, doi. 10.1371/journal.pcbi.0030033

By:

Talavera, David;
Vogel, Christine;
Orozco, Modesto;
Teichmann, Sarah A.;
De la Cruz, Xavier

Publication type:

Article

Protein Family Expansions and Biological Complexity.

Published in:

PLoS Computational Biology, 2006, v. 2, n. 5, p. e48, doi. 10.1371/journal.pcbi.0020048

By:

Vogel, Christine;
Chothia, Cyrus

Publication type:

Article

Absolute abundance for the masses.

Published in:

Nature Biotechnology, 2009, v. 27, n. 9, p. 825, doi. 10.1038/nbt0909-825

By:

Vogel, Christine;
Marcotte, Edward M.

Publication type:

Article

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

Published in:

Nature Biotechnology, 2007, v. 25, n. 1, p. 117, doi. 10.1038/nbt1270

By:

Lu, Peng;
Vogel, Christine;
Wang, Rong;
Yao, Xin;
Marcotte, Edward M.

Publication type:

Article

Insights into the regulation of protein abundance from proteomic and transcriptomic analyses.

Published in:

Nature Reviews Genetics, 2012, v. 13, n. 4, p. 227, doi. 10.1038/nrg3185

By:

Vogel, Christine;
Marcotte, Edward M.

Publication type:

Article

Comprehensive Protein Interactome Analysis of a Key RNA Helicase: Detection of Novel Stress Granule Proteins.

Published in:

Biomolecules (2218-273X), 2015, v. 5, n. 3, p. 1441, doi. 10.3390/biom5031441

By:

Bish, Rebecca;
Cuevas-Polo, Nerea;
Cheng, Zhe;
Hambardzumyan, Dolores;
Munschauer, Mathias;
Landthaler, Markus;
Vogel, Christine

Publication type:

Article

The Arabidopsis leaf transcriptome reveals distinct but also overlapping responses to colonization by phyllosphere commensals and pathogen infection with impact on plant health.

Published in:

New Phytologist, 2016, v. 212, n. 1, p. 192, doi. 10.1111/nph.14036

By:

Vogel, Christine;
Bodenhausen, Natacha;
Gruissem, Wilhelm;
Vorholt, Julia A.

Publication type:

Article

Co-evolution between ectoparasites and their insect hosts: a simulation study of a damselfly–water mite interaction.

Published in:

Ecological Entomology, 2001, v. 26, n. 6, p. 638, doi. 10.1046/j.1365-2311.2001.00360.x

By:

Rolff, Jens;
Vogel, Christine;
Poethke, Hans-Joachim

Publication type:

Article

Systems Approaches to the Eukaryotic Stress Response.

Published in:

2016

By:

Vogel, Christine

Publication type:

Opinion

Protein abundances are more conserved than mRNA abundances across diverse taxa.

Published in:

Proteomics, 2010, v. 10, n. 23, p. 4209, doi. 10.1002/pmic.201000327

By:

Laurent, Jon M.;
Vogel, Christine;
Kwon, Taejoon;
Craig, Stephanie A.;
Boutz, Daniel R.;
Huse, Holly K.;
Nozue, Kazunari;
Walia, Harkamal;
Whiteley, Marvin;
Ronald, Pamela C.;
Marcotte, Edward M.

Publication type:

Article

Proteomic Signatures of the Serological Response to Influenza Vaccination in a Large Human Cohort Study.

Published in:

Viruses (1999-4915), 2022, v. 14, n. 11, p. 2479, doi. 10.3390/v14112479

By:

Wu, Shaohuan;
Pushalkar, Smruti;
Maity, Shuvadeep;
Pressler, Matthew;
Rendleman, Justin;
Vitrinel, Burcu;
Carlock, Michael;
Ross, Ted;
Choi, Hyungwon;
Vogel, Christine

Publication type:

Article

High-throughput analyses of hnRNP H1 dissects its multi-functional aspect.

Published in:

RNA Biology, 2016, v. 13, n. 4, p. 400, doi. 10.1080/15476286.2015.1138030

By:

Uren, Philip J.;
Bahrami-Samani, Emad;
de Araujo, Patricia Rosa;
Vogel, Christine;
Qiao, Mei;
Burns, Suzanne C.;
Smith, Andrew D.;
Penalva, Luiz O. F.

Publication type:

Article

The SUPERFAMILY database in 2004: additions and improvements.

Published in:

Nucleic Acids Research, 2004, v. 32, n. suppl 1, p. d235

By:

Madera, Martin;
Vogel, Christine;
Kummerfeld, Sarah K.;
Chothia, Cyrus;
Gough, Julian

Publication type:

Article

Ring Finger 149-Related Is an FGF/MAPK-Independent Regulator of Pharyngeal Muscle Fate Specification.

Published in:

International Journal of Molecular Sciences, 2023, v. 24, n. 10, p. 8865, doi. 10.3390/ijms24108865

By:

Vitrinel, Burcu;
Vogel, Christine;
Christiaen, Lionel

Publication type:

Article

A Multifactorial Variant of the Attributable Risk for Groups of Exposure Variables.

Published in:

Biometrical Journal, 2001, v. 43, n. 4, p. 461, doi. 10.1002/1521-4036(200108)43:4<461::AID-BIMJ461>3.0.CO;2-Z

By:

Land, Matthias;
Vogel, Christine;
Gefeller, Olaf

Publication type:

Article

Gut ankommen. Der Amtsantritt eines französischen Botschafters im Osmanischen Reich im späten 17. Jahrhundert.

Published in:

Historische Anthropologie, 2013, v. 21, n. 2, p. 158, doi. 10.7788/ha.2013.21.2.158

By:

Vogel, Christine

Publication type:

Article

SUPERFAMILY—sophisticated comparative genomics, data mining, visualization and phylogeny.

Published in:

Nucleic Acids Research, 2009, v. 37, n. suppl_1, p. D380, doi. 10.1093/nar/gkn762

By:

Wilson, Derek;
Pethica, Ralph;
Zhou, Yiduo;
Talbot, Charles;
Vogel, Christine;
Madera, Martin;
Chothia, Cyrus;
Gough, Julian

Publication type:

Article

The SUPERFAMILY database in 2007: families and functions.

Published in:

Nucleic Acids Research, 2007, v. 35, p. d308, doi. 10.1093/nar/gkl910

By:

Wilson, Derek;
Madera, Martin;
Vogel, Christine;
Chothia, Cyrus;
Gough, Julian

Publication type:

Article