Works by Vlamakis, Hera

Results: 38

Sticking together: building a biofilm the Bacillus subtilis way.

Published in:

Nature Reviews Microbiology, 2013, v. 11, n. 3, p. 157, doi. 10.1038/nrmicro2960

By:

Vlamakis, Hera;
Chai, Yunrong;
Beauregard, Pascale;
Losick, Richard;
Kolter, Roberto

Publication type:

Article

From Cell Differentiation to Cell Collectives: Bacillus subtilis Uses Division of Labor to Migrate.

Published in:

PLoS Biology, 2015, v. 13, n. 4, p. 1, doi. 10.1371/journal.pbio.1002141

By:

van Gestel, Jordi;
Vlamakis, Hera;
Kolter, Roberto

Publication type:

Article

Integrated annotation prioritizes metabolites with bioactivity in inflammatory bowel disease.

Published in:

Molecular Systems Biology, 2024, v. 20, n. 4, p. 338, doi. 10.1038/s44320-024-00027-8

By:

Bhosle, Amrisha;
Bae, Sena;
Zhang, Yancong;
Chun, Eunyoung;
Avila-Pacheco, Julian;
Geistlinger, Ludwig;
Pishchany, Gleb;
Glickman, Jonathan N;
Michaud, Monia;
Waldron, Levi;
Clish, Clary B;
Xavier, Ramnik J;
Vlamakis, Hera;
Franzosa, Eric A;
Garrett, Wendy S;
Huttenhower, Curtis

Publication type:

Article

FrzZ, a dual CheY-like response regulator, functions as an output for the Frz chemosensory pathway of Myxococcus xanthus.

Published in:

Molecular Microbiology, 2007, v. 65, n. 1, p. 90, doi. 10.1111/j.1365-2958.2007.05774.x

By:

Inclán, Yuki F.;
Vlamakis, Hera C.;
Zusman, David R.

Publication type:

Article

Analysis of the Frz signal transduction system of Myxococcus xanthus shows the importance of the conserved C-terminal region of the cytoplasmic chemoreceptor FrzCD in sensing signals.

Published in:

Molecular Microbiology, 2004, v. 53, n. 5, p. 1501, doi. 10.1111/j.1365-2958.2004.04221.x

By:

Bustamante, Victor H.;
Martínez-Flores, Irma;
Vlamakis, Hera C.;
Zusman, David R.

Publication type:

Article

The Che4 pathway of Myxococcus xanthus regulates type IV pilus-mediated motility.

Published in:

Molecular Microbiology, 2004, v. 52, n. 6, p. 1799, doi. 10.1111/j.1365-2958.2004.04098.x

By:

Vlamakis, Hera C.;
Kirby, John R.;
Zusman, David R.

Publication type:

Article

Author Correction: Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations.

Published in:

2021

By:

Stražar, Martin;
Temba, Godfrey S.;
Vlamakis, Hera;
Kullaya, Vesla I.;
Lyamuya, Furaha;
Mmbaga, Blandina T.;
Joosten, Leo A. B.;
van der Ven, Andre J. A. M.;
Netea, Mihai G.;
de Mast, Quirijn;
Xavier, Ramnik J.

Publication type:

Correction Notice

Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25213-2

By:

Stražar, Martin;
Temba, Godfrey S.;
Vlamakis, Hera;
Kullaya, Vesla I.;
Lyamuya, Furaha;
Mmbaga, Blandina T.;
Joosten, Leo A. B.;
van der Ven, Andre J. A. M.;
Netea, Mihai G.;
de Mast, Quirijn;
Xavier, Ramnik J.

Publication type:

Article

Publisher Correction: Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations.

Published in:

2021

By:

Stražar, Martin;
Temba, Godfrey S.;
Vlamakis, Hera;
Kullaya, Vesla I.;
Lyamuya, Furaha;
Mmbaga, Blandina T.;
Joosten, Leo A. B.;
van der Ven, Andre J. A. M.;
Netea, Mihai G.;
de Mast, Quirijn;
Xavier, Ramnik J.

Publication type:

Correction Notice

Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25213-2

By:

Stražar, Martin;
Temba, Godfrey S.;
Vlamakis, Hera;
Kullaya, Vesla I.;
Lyamuya, Furaha;
Mmbaga, Blandina T.;
Joosten, Leo A. B.;
van der Ven, Andre J. A. M.;
Netea, Mihai G.;
de Mast, Quirijn;
Xavier, Ramnik J.

Publication type:

Article

Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25213-2

By:

Stražar, Martin;
Temba, Godfrey S.;
Vlamakis, Hera;
Kullaya, Vesla I.;
Lyamuya, Furaha;
Mmbaga, Blandina T.;
Joosten, Leo A. B.;
van der Ven, Andre J. A. M.;
Netea, Mihai G.;
de Mast, Quirijn;
Xavier, Ramnik J.

Publication type:

Article

Structure-based protein function prediction using graph convolutional networks.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23303-9

By:

Gligorijević, Vladimir;
Renfrew, P. Douglas;
Kosciolek, Tomasz;
Leman, Julia Koehler;
Berenberg, Daniel;
Vatanen, Tommi;
Chandler, Chris;
Taylor, Bryn C.;
Fisk, Ian M.;
Vlamakis, Hera;
Xavier, Ramnik J.;
Knight, Rob;
Cho, Kyunghyun;
Bonneau, Richard

Publication type:

Article

Mutualistic interaction between S almonella enterica and A spergillus niger and its effects on Z ea mays colonization.

Published in:

Microbial Biotechnology, 2014, v. 7, n. 6, p. 589, doi. 10.1111/1751-7915.12182

By:

Balbontín, Roberto;
Vlamakis, Hera;
Kolter, Roberto

Publication type:

Article

Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability.

Published in:

Science Translational Medicine, 2016, v. 8, n. 343, p. 1, doi. 10.1126/scitranslmed.aad0917

By:

Yassour, Moran;
Vatanen, Tommi;
Siljander, Heli;
Hämäläinen, Anu-Maaria;
Härkönen, Taina;
Ryhänen, Samppa J.;
Franzosa, Eric A.;
Vlamakis, Hera;
Huttenhower, Curtis;
Gevers, Dirk;
Lander, Eric S.;
Knip, Mikael;
Xavier, Ramnik J.

Publication type:

Article

The world of biofilms.

Published in:

Virulence, 2011, v. 2, n. 5, p. 1, doi. 10.4161/viru.2.5.17902

By:

Vlamakis, Hera

Publication type:

Article

PolyGlcNAc-containing exopolymers enable surface penetration by non-motile Enterococcus faecalis.

Published in:

PLoS Pathogens, 2019, v. 15, n. 2, p. 1, doi. 10.1371/journal.ppat.1007571

By:

Ramos, Yusibeska;
Rocha, Jorge;
Hael, Ana L.;
van Gestel, Jordi;
Vlamakis, Hera;
Cywes-Bentley, Colette;
Cubillos-Ruiz, Juan R.;
Pier, Gerald B.;
Gilmore, Michael S.;
Kolter, Roberto;
Morales, Diana K.

Publication type:

Article

Longitudinal disease-associated gut microbiome differences in infants with food protein-induced allergic proctocolitis.

Published in:

Microbiome, 2022, v. 10, n. 1, p. 1, doi. 10.1186/s40168-022-01322-y

By:

Martin, Victoria M.;
Virkud, Yamini V.;
Dahan, Ehud;
Seay, Hannah L.;
Itzkovits, Dvir;
Vlamakis, Hera;
Xavier, Ramnik;
Shreffler, Wayne G.;
Yuan, Qian;
Yassour, Moran

Publication type:

Article

Whole microbial community viability is not quantitatively reflected by propidium monoazide sequencing approach.

Published in:

Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-020-00961-3

By:

Wang, Ya;
Yan, Yan;
Thompson, Kelsey N.;
Bae, Sena;
Accorsi, Emma K.;
Zhang, Yancong;
Shen, Jiaxian;
Vlamakis, Hera;
Hartmann, Erica M.;
Huttenhower, Curtis

Publication type:

Article

Population structure discovery in meta-analyzed microbial communities and inflammatory bowel disease using MMUPHin.

Published in:

Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02753-4

By:

Ma, Siyuan;
Shungin, Dmitry;
Mallick, Himel;
Schirmer, Melanie;
Nguyen, Long H.;
Kolde, Raivo;
Franzosa, Eric;
Vlamakis, Hera;
Xavier, Ramnik;
Huttenhower, Curtis

Publication type:

Article

Gut bacterial metabolites modulate endoplasmic reticulum stress.

Published in:

Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02496-8

By:

Ke, Xiaobo;
You, Kwontae;
Pichaud, Matthieu;
Haiser, Henry J.;
Graham, Daniel B.;
Vlamakis, Hera;
Porter, Jeffrey A.;
Xavier, Ramnik J.

Publication type:

Article

The influence of the gut microbiome on BCG-induced trained immunity.

Published in:

Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02482-0

By:

Stražar, Martin;
Mourits, Vera P.;
Koeken, Valerie A. C. M.;
de Bree, L. Charlotte J.;
Moorlag, Simone J. C. F. M.;
Joosten, Leo A. B.;
van Crevel, Reinout;
Vlamakis, Hera;
Netea, Mihai G.;
Xavier, Ramnik J.

Publication type:

Article

Stress ulcer prophylaxis versus placebo-a blinded randomized control trial to evaluate the safety of two strategies in critically ill infants with congenital heart disease (SUPPRESS-CHD).

Published in:

2020

By:

Mills, Kimberly I.;
Albert, Ben D.;
Bechard, Lori J.;
Duggan, Christopher P.;
Kaza, Aditya;
Rakoff-Nahoum, Seth;
Vlamakis, Hera;
Sleeper, Lynn A.;
Newburger, Jane W.;
Priebe, Gregory P.;
Mehta, Nilesh M.

Publication type:

journal article

Bacterial influence on alkenones in live microalgae.

Published in:

Journal of Phycology, 2016, v. 52, n. 1, p. 125, doi. 10.1111/jpy.12370

By:

Segev, Einat;
Castañeda, Isla S.;
Sikes, Elisabeth L.;
Vlamakis, Hera;
Kolter, Roberto;
Wood, M.

Publication type:

Article

The biofilm formation defect of a Bacillus subtilis flotillin-defective mutant involves the protease FtsH.

Published in:

Molecular Microbiology, 2012, v. 86, n. 2, p. 457, doi. 10.1111/j.1365-2958.2012.08205.x

By:

Yepes, Ana;
Schneider, Johannes;
Mielich, Benjamin;
Koch, Gudrun;
García-Betancur, Juan-Carlos;
Ramamurthi, Kumaran S.;
Vlamakis, Hera;
López, Daniel

Publication type:

Article

An accessory protein required for anchoring and assembly of amyloid fibres in B. subtilis biofilms.

Published in:

Molecular Microbiology, 2011, v. 80, n. 5, p. 1155, doi. 10.1111/j.1365-2958.2011.07653.x

By:

Romero, Diego;
Vlamakis, Hera;
Losick, Richard;
Kolter, Roberto

Publication type:

Article

Cannibalism enhances biofilm development in Bacillus subtilis.

Published in:

Molecular Microbiology, 2009, v. 74, n. 3, p. 609, doi. 10.1111/j.1365-2958.2009.06882.x

By:

López, Daniel;
Vlamakis, Hera;
Losick, Richard;
Kolter, Roberto

Publication type:

Article

Population study of the gut microbiome: associations with diet, lifestyle, and cardiometabolic disease.

Published in:

Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-01007-5

By:

Walker, Rebecca L.;
Vlamakis, Hera;
Lee, Jonathan Wei Jie;
Besse, Luke A.;
Xanthakis, Vanessa;
Vasan, Ramachandran S.;
Shaw, Stanley Y.;
Xavier, Ramnik J.

Publication type:

Article

Population study of the gut microbiome: associations with diet, lifestyle, and cardiometabolic disease.

Published in:

Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-01007-5

By:

Walker, Rebecca L.;
Vlamakis, Hera;
Lee, Jonathan Wei Jie;
Besse, Luke A.;
Xanthakis, Vanessa;
Vasan, Ramachandran S.;
Shaw, Stanley Y.;
Xavier, Ramnik J.

Publication type:

Article

Congruent microbiome signatures in fibrosis-prone autoimmune diseases: IgG4-related disease and systemic sclerosis.

Published in:

Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00853-7

By:

Plichta, Damian R.;
Somani, Juhi;
Pichaud, Matthieu;
Wallace, Zachary S.;
Fernandes, Ana D.;
Perugino, Cory A.;
Lähdesmäki, Harri;
Stone, John H.;
Vlamakis, Hera;
Chung, Daniel C.;
Khanna, Dinesh;
Pillai, Shiv;
Xavier, Ramnik J.

Publication type:

Article

Host genetic variation and its microbiome interactions within the Human Microbiome Project.

Published in:

Genome Medicine, 2018, v. 10, p. 1, doi. 10.1186/s13073-018-0515-8

By:

Kolde, Raivo;
Franzosa, Eric A.;
Rahnavard, Gholamali;
Hall, Andrew Brantley;
Vlamakis, Hera;
Stevens, Christine;
Daly, Mark J.;
Xavier, Ramnik J.;
Huttenhower, Curtis

Publication type:

Article

A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients.

Published in:

Genome Medicine, 2017, v. 9, p. 1, doi. 10.1186/s13073-017-0490-5

By:

Hall, Andrew Brantley;
Yassour, Moran;
Sauk, Jenny;
Garner, Ashley;
Xiaofang Jiang;
Arthur, Timothy;
Lagoudas, Georgia K.;
Vatanen, Tommi;
Fornelos, Nadine;
Wilson, Robin;
Bertha, Madeline;
Cohen, Melissa;
Garber, John;
Khalili, Hamed;
Gevers, Dirk;
Ananthakrishnan, Ashwin N.;
Kugathasan, Subra;
Lander, Eric S.;
Blainey, Paul;
Vlamakis, Hera

Publication type:

Article

Thieves, assassins and spies of the microbial world.

Published in:

Nature Cell Biology, 2005, v. 7, n. 10, p. 933, doi. 10.1038/ncb1005-933

By:

Vlamakis, Hera C.;
Kolter, Roberto

Publication type:

Article

Morphological Heterogeneity and Attachment of Phaeobacter inhibens.

Published in:

PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0141300

By:

Segev, Einat;
Tellez, Adèle;
Vlamakis, Hera;
Kolter, Roberto

Publication type:

Article

The Crohn’s disease polymorphism, ATG16L1 T300A, alters the gut microbiota and enhances the local Th1/Th17 response.

Published in:

eLife, 2019, p. 1, doi. 10.7554/eLife.39982

By:

Lavoie, Sydney;
Conway, Kara L.;
Lassen, Kara G.;
Jijon, Humberto B.;
Hui Pan;
Eunyoung Chun;
Michaud, Monia;
Lang, Jessica K.;
Gallini Comeau, Carey Ann;
Dreyfuss, Jonathan M.;
Glickman, Jonathan N.;
Vlamakis, Hera;
Ananthakrishnan, Ashwin;
Kostic, Aleksander;
Garrett, Wendy S.;
Xavier, Ramnik J.

Publication type:

Article

Dynamic metabolic exchange governs a marine algal-bacterial interaction.

Published in:

eLife, 2016, p. 1, doi. 10.7554/eLife.17473

By:

Segev, Einat;
Wyche, Thomas P.;
Ki Hyun Kim;
Petersen, Jörn;
Ellebrandt, Claire;
Vlamakis, Hera;
Barteneva, Natasha;
Paulson, Joseph N.;
Chai, Liraz;
Clardy, Jon;
Kolter, Roberto

Publication type:

Article

Metal-Enhanced Fluorescence to Quantify Bacterial Adhesion.

Published in:

Advanced Materials, 2011, v. 23, n. 12, p. H101, doi. 10.1002/adma.201004096

By:

Lee, Kangwon;
Hahn, Lewis D.;
Yuen, William W.;
Vlamakis, Hera;
Kolter, Roberto;
Mooney, David J.

Publication type:

Article

Bioimaging: Metal-Enhanced Fluorescence to Quantify Bacterial Adhesion (Adv. Mater. 12/2011).

Published in:

Advanced Materials, 2011, v. 23, n. 12, p. H126, doi. 10.1002/adma.201190039

By:

Lee, Kangwon;
Hahn, Lewis D.;
Yuen, William W.;
Vlamakis, Hera;
Kolter, Roberto;
Mooney, David J.

Publication type:

Article

Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences.

Published in:

Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10927-1

By:

Mallick, Himel;
Franzosa, Eric A.;
Mclver, Lauren J.;
Banerjee, Soumya;
Sirota-Madi, Alexandra;
Kostic, Aleksandar D.;
Clish, Clary B.;
Vlamakis, Hera;
Xavier, Ramnik J.;
Huttenhower, Curtis

Publication type:

Article