Works by Vlamakis, Hera

Results: 38

Whole microbial community viability is not quantitatively reflected by propidium monoazide sequencing approach.
Published in:
Microbiome, 2021, v. 9, n. 1, p. 1, doi. 10.1186/s40168-020-00961-3
By:
- Wang, Ya;
- Yan, Yan;
- Thompson, Kelsey N.;
- Bae, Sena;
- Accorsi, Emma K.;
- Zhang, Yancong;
- Shen, Jiaxian;
- Vlamakis, Hera;
- Hartmann, Erica M.;
- Huttenhower, Curtis
Publication type:
Article
Metal-Enhanced Fluorescence to Quantify Bacterial Adhesion.
Published in:
Advanced Materials, 2011, v. 23, n. 12, p. H101, doi. 10.1002/adma.201004096
By:
- Lee, Kangwon;
- Hahn, Lewis D.;
- Yuen, William W.;
- Vlamakis, Hera;
- Kolter, Roberto;
- Mooney, David J.
Publication type:
Article
Bioimaging: Metal-Enhanced Fluorescence to Quantify Bacterial Adhesion (Adv. Mater. 12/2011).
Published in:
Advanced Materials, 2011, v. 23, n. 12, p. H126, doi. 10.1002/adma.201190039
By:
- Lee, Kangwon;
- Hahn, Lewis D.;
- Yuen, William W.;
- Vlamakis, Hera;
- Kolter, Roberto;
- Mooney, David J.
Publication type:
Article
Author Correction: Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations.
Published in:
2021
By:
- Stražar, Martin;
- Temba, Godfrey S.;
- Vlamakis, Hera;
- Kullaya, Vesla I.;
- Lyamuya, Furaha;
- Mmbaga, Blandina T.;
- Joosten, Leo A. B.;
- van der Ven, Andre J. A. M.;
- Netea, Mihai G.;
- de Mast, Quirijn;
- Xavier, Ramnik J.
Publication type:
Correction Notice
Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25213-2
By:
- Stražar, Martin;
- Temba, Godfrey S.;
- Vlamakis, Hera;
- Kullaya, Vesla I.;
- Lyamuya, Furaha;
- Mmbaga, Blandina T.;
- Joosten, Leo A. B.;
- van der Ven, Andre J. A. M.;
- Netea, Mihai G.;
- de Mast, Quirijn;
- Xavier, Ramnik J.
Publication type:
Article
Publisher Correction: Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations.
Published in:
2021
By:
- Stražar, Martin;
- Temba, Godfrey S.;
- Vlamakis, Hera;
- Kullaya, Vesla I.;
- Lyamuya, Furaha;
- Mmbaga, Blandina T.;
- Joosten, Leo A. B.;
- van der Ven, Andre J. A. M.;
- Netea, Mihai G.;
- de Mast, Quirijn;
- Xavier, Ramnik J.
Publication type:
Correction Notice
Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25213-2
By:
- Stražar, Martin;
- Temba, Godfrey S.;
- Vlamakis, Hera;
- Kullaya, Vesla I.;
- Lyamuya, Furaha;
- Mmbaga, Blandina T.;
- Joosten, Leo A. B.;
- van der Ven, Andre J. A. M.;
- Netea, Mihai G.;
- de Mast, Quirijn;
- Xavier, Ramnik J.
Publication type:
Article
The world of biofilms.
Published in:
Virulence, 2011, v. 2, n. 5, p. 1, doi. 10.4161/viru.2.5.17902
By:
- Vlamakis, Hera
Publication type:
Article
From Cell Differentiation to Cell Collectives: Bacillus subtilis Uses Division of Labor to Migrate.
Published in:
PLoS Biology, 2015, v. 13, n. 4, p. 1, doi. 10.1371/journal.pbio.1002141
By:
- van Gestel, Jordi;
- Vlamakis, Hera;
- Kolter, Roberto
Publication type:
Article
Morphological Heterogeneity and Attachment of Phaeobacter inhibens.
Published in:
PLoS ONE, 2015, v. 10, n. 10, p. 1, doi. 10.1371/journal.pone.0141300
By:
- Segev, Einat;
- Tellez, Adèle;
- Vlamakis, Hera;
- Kolter, Roberto
Publication type:
Article
Sticking together: building a biofilm the Bacillus subtilis way.
Published in:
Nature Reviews Microbiology, 2013, v. 11, n. 3, p. 157, doi. 10.1038/nrmicro2960
By:
- Vlamakis, Hera;
- Chai, Yunrong;
- Beauregard, Pascale;
- Losick, Richard;
- Kolter, Roberto
Publication type:
Article
Natural history of the infant gut microbiome and impact of antibiotic treatment on bacterial strain diversity and stability.
Published in:
Science Translational Medicine, 2016, v. 8, n. 343, p. 1, doi. 10.1126/scitranslmed.aad0917
By:
- Yassour, Moran;
- Vatanen, Tommi;
- Siljander, Heli;
- Hämäläinen, Anu-Maaria;
- Härkönen, Taina;
- Ryhänen, Samppa J.;
- Franzosa, Eric A.;
- Vlamakis, Hera;
- Huttenhower, Curtis;
- Gevers, Dirk;
- Lander, Eric S.;
- Knip, Mikael;
- Xavier, Ramnik J.
Publication type:
Article
Gut bacterial metabolites modulate endoplasmic reticulum stress.
Published in:
Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02496-8
By:
- Ke, Xiaobo;
- You, Kwontae;
- Pichaud, Matthieu;
- Haiser, Henry J.;
- Graham, Daniel B.;
- Vlamakis, Hera;
- Porter, Jeffrey A.;
- Xavier, Ramnik J.
Publication type:
Article
The influence of the gut microbiome on BCG-induced trained immunity.
Published in:
Genome Biology, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s13059-021-02482-0
By:
- Stražar, Martin;
- Mourits, Vera P.;
- Koeken, Valerie A. C. M.;
- de Bree, L. Charlotte J.;
- Moorlag, Simone J. C. F. M.;
- Joosten, Leo A. B.;
- van Crevel, Reinout;
- Vlamakis, Hera;
- Netea, Mihai G.;
- Xavier, Ramnik J.
Publication type:
Article
Congruent microbiome signatures in fibrosis-prone autoimmune diseases: IgG4-related disease and systemic sclerosis.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-00853-7
By:
- Plichta, Damian R.;
- Somani, Juhi;
- Pichaud, Matthieu;
- Wallace, Zachary S.;
- Fernandes, Ana D.;
- Perugino, Cory A.;
- Lähdesmäki, Harri;
- Stone, John H.;
- Vlamakis, Hera;
- Chung, Daniel C.;
- Khanna, Dinesh;
- Pillai, Shiv;
- Xavier, Ramnik J.
Publication type:
Article
Host genetic variation and its microbiome interactions within the Human Microbiome Project.
Published in:
Genome Medicine, 2018, v. 10, p. 1, doi. 10.1186/s13073-018-0515-8
By:
- Kolde, Raivo;
- Franzosa, Eric A.;
- Rahnavard, Gholamali;
- Hall, Andrew Brantley;
- Vlamakis, Hera;
- Stevens, Christine;
- Daly, Mark J.;
- Xavier, Ramnik J.;
- Huttenhower, Curtis
Publication type:
Article
A novel Ruminococcus gnavus clade enriched in inflammatory bowel disease patients.
Published in:
Genome Medicine, 2017, v. 9, p. 1, doi. 10.1186/s13073-017-0490-5
By:
- Hall, Andrew Brantley;
- Yassour, Moran;
- Sauk, Jenny;
- Garner, Ashley;
- Xiaofang Jiang;
- Arthur, Timothy;
- Lagoudas, Georgia K.;
- Vatanen, Tommi;
- Fornelos, Nadine;
- Wilson, Robin;
- Bertha, Madeline;
- Cohen, Melissa;
- Garber, John;
- Khalili, Hamed;
- Gevers, Dirk;
- Ananthakrishnan, Ashwin N.;
- Kugathasan, Subra;
- Lander, Eric S.;
- Blainey, Paul;
- Vlamakis, Hera
Publication type:
Article
PolyGlcNAc-containing exopolymers enable surface penetration by non-motile Enterococcus faecalis.
Published in:
PLoS Pathogens, 2019, v. 15, n. 2, p. 1, doi. 10.1371/journal.ppat.1007571
By:
- Ramos, Yusibeska;
- Rocha, Jorge;
- Hael, Ana L.;
- van Gestel, Jordi;
- Vlamakis, Hera;
- Cywes-Bentley, Colette;
- Cubillos-Ruiz, Juan R.;
- Pier, Gerald B.;
- Gilmore, Michael S.;
- Kolter, Roberto;
- Morales, Diana K.
Publication type:
Article
Longitudinal disease-associated gut microbiome differences in infants with food protein-induced allergic proctocolitis.
Published in:
Microbiome, 2022, v. 10, n. 1, p. 1, doi. 10.1186/s40168-022-01322-y
By:
- Martin, Victoria M.;
- Virkud, Yamini V.;
- Dahan, Ehud;
- Seay, Hannah L.;
- Itzkovits, Dvir;
- Vlamakis, Hera;
- Xavier, Ramnik;
- Shreffler, Wayne G.;
- Yuan, Qian;
- Yassour, Moran
Publication type:
Article
The biofilm formation defect of a Bacillus subtilis flotillin-defective mutant involves the protease FtsH.
Published in:
Molecular Microbiology, 2012, v. 86, n. 2, p. 457, doi. 10.1111/j.1365-2958.2012.08205.x
By:
- Yepes, Ana;
- Schneider, Johannes;
- Mielich, Benjamin;
- Koch, Gudrun;
- García-Betancur, Juan-Carlos;
- Ramamurthi, Kumaran S.;
- Vlamakis, Hera;
- López, Daniel
Publication type:
Article
An accessory protein required for anchoring and assembly of amyloid fibres in B. subtilis biofilms.
Published in:
Molecular Microbiology, 2011, v. 80, n. 5, p. 1155, doi. 10.1111/j.1365-2958.2011.07653.x
By:
- Romero, Diego;
- Vlamakis, Hera;
- Losick, Richard;
- Kolter, Roberto
Publication type:
Article
Cannibalism enhances biofilm development in Bacillus subtilis.
Published in:
Molecular Microbiology, 2009, v. 74, n. 3, p. 609, doi. 10.1111/j.1365-2958.2009.06882.x
By:
- López, Daniel;
- Vlamakis, Hera;
- Losick, Richard;
- Kolter, Roberto
Publication type:
Article
FrzZ, a dual CheY-like response regulator, functions as an output for the Frz chemosensory pathway of Myxococcus xanthus.
Published in:
Molecular Microbiology, 2007, v. 65, n. 1, p. 90, doi. 10.1111/j.1365-2958.2007.05774.x
By:
- Inclán, Yuki F.;
- Vlamakis, Hera C.;
- Zusman, David R.
Publication type:
Article
Thieves, assassins and spies of the microbial world.
Published in:
Nature Cell Biology, 2005, v. 7, n. 10, p. 933, doi. 10.1038/ncb1005-933
By:
- Vlamakis, Hera C.;
- Kolter, Roberto
Publication type:
Article
Bacterial influence on alkenones in live microalgae.
Published in:
Journal of Phycology, 2016, v. 52, n. 1, p. 125, doi. 10.1111/jpy.12370
By:
- Segev, Einat;
- Castañeda, Isla S.;
- Sikes, Elisabeth L.;
- Vlamakis, Hera;
- Kolter, Roberto;
- Wood, M.
Publication type:
Article
Predictive metabolomic profiling of microbial communities using amplicon or metagenomic sequences.
Published in:
Nature Communications, 2019, v. 10, n. 1, p. N.PAG, doi. 10.1038/s41467-019-10927-1
By:
- Mallick, Himel;
- Franzosa, Eric A.;
- Mclver, Lauren J.;
- Banerjee, Soumya;
- Sirota-Madi, Alexandra;
- Kostic, Aleksandar D.;
- Clish, Clary B.;
- Vlamakis, Hera;
- Xavier, Ramnik J.;
- Huttenhower, Curtis
Publication type:
Article
Population structure discovery in meta-analyzed microbial communities and inflammatory bowel disease using MMUPHin.
Published in:
Genome Biology, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s13059-022-02753-4
By:
- Ma, Siyuan;
- Shungin, Dmitry;
- Mallick, Himel;
- Schirmer, Melanie;
- Nguyen, Long H.;
- Kolde, Raivo;
- Franzosa, Eric;
- Vlamakis, Hera;
- Xavier, Ramnik;
- Huttenhower, Curtis
Publication type:
Article
Stress ulcer prophylaxis versus placebo-a blinded randomized control trial to evaluate the safety of two strategies in critically ill infants with congenital heart disease (SUPPRESS-CHD).
Published in:
2020
By:
- Mills, Kimberly I.;
- Albert, Ben D.;
- Bechard, Lori J.;
- Duggan, Christopher P.;
- Kaza, Aditya;
- Rakoff-Nahoum, Seth;
- Vlamakis, Hera;
- Sleeper, Lynn A.;
- Newburger, Jane W.;
- Priebe, Gregory P.;
- Mehta, Nilesh M.
Publication type:
journal article
Integrated annotation prioritizes metabolites with bioactivity in inflammatory bowel disease.
Published in:
Molecular Systems Biology, 2024, v. 20, n. 4, p. 338, doi. 10.1038/s44320-024-00027-8
By:
- Bhosle, Amrisha;
- Bae, Sena;
- Zhang, Yancong;
- Chun, Eunyoung;
- Avila-Pacheco, Julian;
- Geistlinger, Ludwig;
- Pishchany, Gleb;
- Glickman, Jonathan N;
- Michaud, Monia;
- Waldron, Levi;
- Clish, Clary B;
- Xavier, Ramnik J;
- Vlamakis, Hera;
- Franzosa, Eric A;
- Garrett, Wendy S;
- Huttenhower, Curtis
Publication type:
Article
The Crohn’s disease polymorphism, ATG16L1 T300A, alters the gut microbiota and enhances the local Th1/Th17 response.
Published in:
eLife, 2019, p. 1, doi. 10.7554/eLife.39982
By:
- Lavoie, Sydney;
- Conway, Kara L.;
- Lassen, Kara G.;
- Jijon, Humberto B.;
- Hui Pan;
- Eunyoung Chun;
- Michaud, Monia;
- Lang, Jessica K.;
- Gallini Comeau, Carey Ann;
- Dreyfuss, Jonathan M.;
- Glickman, Jonathan N.;
- Vlamakis, Hera;
- Ananthakrishnan, Ashwin;
- Kostic, Aleksander;
- Garrett, Wendy S.;
- Xavier, Ramnik J.
Publication type:
Article
Dynamic metabolic exchange governs a marine algal-bacterial interaction.
Published in:
eLife, 2016, p. 1, doi. 10.7554/eLife.17473
By:
- Segev, Einat;
- Wyche, Thomas P.;
- Ki Hyun Kim;
- Petersen, Jörn;
- Ellebrandt, Claire;
- Vlamakis, Hera;
- Barteneva, Natasha;
- Paulson, Joseph N.;
- Chai, Liraz;
- Clardy, Jon;
- Kolter, Roberto
Publication type:
Article
Mutualistic interaction between S almonella enterica and A spergillus niger and its effects on Z ea mays colonization.
Published in:
Microbial Biotechnology, 2014, v. 7, n. 6, p. 589, doi. 10.1111/1751-7915.12182
By:
- Balbontín, Roberto;
- Vlamakis, Hera;
- Kolter, Roberto
Publication type:
Article
Analysis of the Frz signal transduction system of Myxococcus xanthus shows the importance of the conserved C-terminal region of the cytoplasmic chemoreceptor FrzCD in sensing signals.
Published in:
Molecular Microbiology, 2004, v. 53, n. 5, p. 1501, doi. 10.1111/j.1365-2958.2004.04221.x
By:
- Bustamante, Victor H.;
- Martínez-Flores, Irma;
- Vlamakis, Hera C.;
- Zusman, David R.
Publication type:
Article
The Che4 pathway of Myxococcus xanthus regulates type IV pilus-mediated motility.
Published in:
Molecular Microbiology, 2004, v. 52, n. 6, p. 1799, doi. 10.1111/j.1365-2958.2004.04098.x
By:
- Vlamakis, Hera C.;
- Kirby, John R.;
- Zusman, David R.
Publication type:
Article
Gut microbiome-mediated metabolism effects on immunity in rural and urban African populations.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-25213-2
By:
- Stražar, Martin;
- Temba, Godfrey S.;
- Vlamakis, Hera;
- Kullaya, Vesla I.;
- Lyamuya, Furaha;
- Mmbaga, Blandina T.;
- Joosten, Leo A. B.;
- van der Ven, Andre J. A. M.;
- Netea, Mihai G.;
- de Mast, Quirijn;
- Xavier, Ramnik J.
Publication type:
Article
Structure-based protein function prediction using graph convolutional networks.
Published in:
Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-23303-9
By:
- Gligorijević, Vladimir;
- Renfrew, P. Douglas;
- Kosciolek, Tomasz;
- Leman, Julia Koehler;
- Berenberg, Daniel;
- Vatanen, Tommi;
- Chandler, Chris;
- Taylor, Bryn C.;
- Fisk, Ian M.;
- Vlamakis, Hera;
- Xavier, Ramnik J.;
- Knight, Rob;
- Cho, Kyunghyun;
- Bonneau, Richard
Publication type:
Article
Population study of the gut microbiome: associations with diet, lifestyle, and cardiometabolic disease.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-01007-5
By:
- Walker, Rebecca L.;
- Vlamakis, Hera;
- Lee, Jonathan Wei Jie;
- Besse, Luke A.;
- Xanthakis, Vanessa;
- Vasan, Ramachandran S.;
- Shaw, Stanley Y.;
- Xavier, Ramnik J.
Publication type:
Article
Population study of the gut microbiome: associations with diet, lifestyle, and cardiometabolic disease.
Published in:
Genome Medicine, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13073-021-01007-5
By:
- Walker, Rebecca L.;
- Vlamakis, Hera;
- Lee, Jonathan Wei Jie;
- Besse, Luke A.;
- Xanthakis, Vanessa;
- Vasan, Ramachandran S.;
- Shaw, Stanley Y.;
- Xavier, Ramnik J.
Publication type:
Article