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Time-Lagged Correlation Analysis of Shellfish Toxicity Reveals Predictive Links to Adjacent Areas, Species, and Environmental Conditions.
- Published in:
- Toxins, 2022, v. 14, n. 10, p. N.PAG, doi. 10.3390/toxins14100679
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- Article
Kidney Cancer Biomarker Selection Using Regularized Survival Models.
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- Cells (2073-4409), 2022, v. 11, n. 15, p. 2311, doi. 10.3390/cells11152311
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- Article
ROSIE: RObust Sparse ensemble for outlIEr detection and gene selection in cancer omics data.
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- Statistical Methods in Medical Research, 2022, v. 31, n. 5, p. 947, doi. 10.1177/09622802211072456
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- Article
Totoro: Identifying Active Reactions During the Transient State for Metabolic Perturbations.
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- Frontiers in Genetics, 2022, v. 13, p. 1, doi. 10.3389/fgene.2022.815476
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- Article
Dynamic modeling of bone remodeling, osteolytic metastasis and PK/PD therapy: introducing variable order derivatives as a simplification technique.
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- Journal of Mathematical Biology, 2021, v. 83, n. 4, p. 1, doi. 10.1007/s00285-021-01666-3
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- Article
Spatiotemporal Correlation Feature Spaces to Support Anomaly Detection in Water Distribution Networks.
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- Water (20734441), 2021, v. 13, n. 18, p. 2551, doi. 10.3390/w13182551
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- Article
Coupling sparse Cox models with clustering of longitudinal transcriptomics data for trauma prognosis.
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- BioData Mining, 2021, v. 14, n. 1, p. 1, doi. 10.1186/s13040-021-00257-8
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- Article
The Role of Network Science in Glioblastoma.
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- Cancers, 2021, v. 13, n. 5, p. 1045, doi. 10.3390/cancers13051045
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- Article
A Review of Recent Machine Learning Advances for Forecasting Harmful Algal Blooms and Shellfish Contamination.
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- Journal of Marine Science & Engineering, 2021, v. 9, n. 3, p. 283, doi. 10.3390/jmse9030283
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- Article
Outlier Detection for Multivariate Time Series Using Dynamic Bayesian Networks.
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- Applied Sciences (2076-3417), 2021, v. 11, n. 4, p. 1955, doi. 10.3390/app11041955
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- Article
Structured sparsity regularization for analyzing high-dimensional omics data.
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- Briefings in Bioinformatics, 2021, v. 22, n. 1, p. 77, doi. 10.1093/bib/bbaa122
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- Article
TCox: Correlation-Based Regularization Applied to Colorectal Cancer Survival Data.
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- Biomedicines, 2020, v. 8, n. 11, p. 488, doi. 10.3390/biomedicines8110488
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- Article
Studying Bone Remodelling and Tumour Growth for Therapy Predictive Control.
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- Mathematics (2227-7390), 2020, v. 8, n. 5, p. 679, doi. 10.3390/math8050679
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- Publication type:
- Article
MOMO - multi-objective metabolic mixed integer optimization: application to yeast strain engineering.
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- BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3377-1
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- Publication type:
- Article
Tracking intratumoral heterogeneity in glioblastoma via regularized classification of single-cell RNA-Seq data.
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- BMC Bioinformatics, 2020, v. 21, n. 1, p. 1, doi. 10.1186/s12859-020-3390-4
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- Publication type:
- Article
AliClu - Temporal sequence alignment for clustering longitudinal clinical data.
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- 2019
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- Publication type:
- journal article
Robust identification of target genes and outliers in triple-negative breast cancer data.
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- 2019
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- Publication type:
- journal article
Benchmarking of alignment-free sequence comparison methods.
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- Genome Biology, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s13059-019-1755-7
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- Publication type:
- Article
Twiner: correlation-based regularization for identifying common cancer gene signatures.
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- BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-2937-8
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- Publication type:
- Article
Modelling cancer outcomes of bone metastatic patients: combining survival data with N-Telopeptide of type I collagen (NTX) dynamics through joint models.
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- 2019
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- Publication type:
- journal article
Assessing Escherichia coli metabolism models and simulation approaches in phenotype predictions: Validation against experimental data.
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- Biotechnology Progress, 2018, v. 34, n. 6, p. 1344, doi. 10.1002/btpr.2700
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- Article
Arthroscopic Superior Capsular Reconstruction With a Minimally Invasive Harvested Fascia Lata Autograft Produces Good Clinical Results.
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- Orthopaedic Journal of Sports Medicine, 2018, v. 6, n. 11, p. 1, doi. 10.1177/2325967118808242
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- Publication type:
- Article
Ensemble outlier detection and gene selection in triple-negative breast cancer data.
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- BMC Bioinformatics, 2018, v. 19, n. 1, p. 1, doi. 10.1186/s12859-018-2149-7
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- Publication type:
- Article
Interplay Between Capsule Expression and Uracil Metabolism in Streptococcus pneumoniae D39.
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- Frontiers in Microbiology, 2018, p. 1, doi. 10.3389/fmicb.2018.00321
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- Publication type:
- Article
Models of Bone Metastases and Therapy using Fractional Derivatives.
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- Journal of Applied Nonlinear Dynamics, 2018, v. 7, n. 1, p. 81, doi. 10.5890/JAND.2018.03.007
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- Publication type:
- Article
Identification of influential observations in high-dimensional cancer survival data through the rank product test.
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- BioData Mining, 2018, p. 1, doi. 10.1186/s13040-018-0162-z
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- Publication type:
- Article
OptPipe - a pipeline for optimizing metabolic engineering targets.
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- BMC Systems Biology, 2017, v. 11, p. 1, doi. 10.1186/s12918-017-0515-0
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- Publication type:
- Article
Alignment-free sequence comparison: benefits, applications, and tools.
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- Genome Biology, 2017, v. 18, p. 1, doi. 10.1186/s13059-017-1319-7
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- Publication type:
- Article
Unsupervised learning of pharmacokinetic responses.
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- Computational Statistics, 2017, v. 32, n. 2, p. 409, doi. 10.1007/s00180-016-0707-x
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- Publication type:
- Article
DegreeCox - a network-based regularization method for survival analysis.
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- BMC Bioinformatics, 2016, v. 17, p. 109, doi. 10.1186/s12859-016-1310-4
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- Publication type:
- Article
A Combinatorial Algorithm for Microbial Consortia Synthetic Design.
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- Scientific Reports, 2016, p. 29182, doi. 10.1038/srep29182
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- Publication type:
- Article
Improving Protein Expression Prediction Using Extra Features and Ensemble Averaging.
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- PLoS ONE, 2016, v. 11, n. 3, p. 1, doi. 10.1371/journal.pone.0150369
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- Publication type:
- Article
Transcriptional and metabolic effects of glucose on Streptococcus pneumoniae sugar metabolism.
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- Frontiers in Microbiology, 2015, v. 6, p. 1, doi. 10.3389/fmicb.2015.01041
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- Article
Host Glycan Sugar-Specific Pathways in Streptococcus pneumonia: Galactose as a Key Sugar in Colonisation and Infection.
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- PLoS ONE, 2015, v. 10, n. 3, p. 1, doi. 10.1371/journal.pone.0121042
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- Publication type:
- Article
KiMoSys: a web-based repository of experimental data for KInetic MOdels of biological SYStems.
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- BMC Systems Biology, 2014, v. 8, n. 1, p. 1, doi. 10.1186/s12918-014-0085-3
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- Article
Editorial: Alignment-free methods in computational biology.
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- Briefings in Bioinformatics, 2014, v. 15, n. 3, p. 341, doi. 10.1093/bib/bbu005
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- Publication type:
- Article
Information theory applications for biological sequence analysis.
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- Briefings in Bioinformatics, 2014, v. 15, n. 3, p. 376, doi. 10.1093/bib/bbt068
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- Article
Global Meta-Analysis of Transcriptomics Studies.
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- PLoS ONE, 2014, v. 9, n. 2, p. 1, doi. 10.1371/journal.pone.0089318
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- Article
BGFit: management and automated fitting of biological growth curves.
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- BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-283
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- Article
Using Information Interaction to Discover Epistatic Effects in Complex Diseases.
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- PLoS ONE, 2013, v. 8, n. 10, p. 1, doi. 10.1371/journal.pone.0076300
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- Publication type:
- Article
QUANTITATIVE MODELING OF THE SACCHAROMYCES CEREVISIAE FLR1 REGULATORY NETWORK USING AN S-SYSTEM FORMALISM.
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- Journal of Bioinformatics & Computational Biology, 2011, v. 9, n. 5, p. 613, doi. 10.1142/S0219720011005690
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- Article
Optimization strategies for metabolic networks.
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- BMC Systems Biology, 2010, v. 4, p. 113, doi. 10.1186/1752-0509-4-113
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- Article
Biological sequences as pictures -- a generic two dimensional solution for iterated maps.
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- BMC Bioinformatics, 2009, v. 10, p. 1, doi. 10.1186/1471-2105-10-100
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- Article
Entropie Profiler - detection of conservation in genomes using information theory.
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- BMC Research Notes, 2009, v. 2, p. 1, doi. 10.1186/1756-0500-2-72
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- Publication type:
- Article
Identification of neutral biochemical network models from time series data.
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- BMC Systems Biology, 2009, v. 3, p. 1, doi. 10.1186/1752-0509-3-47
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- Publication type:
- Article
ccrB typing tool: an online resource for staphylococci ccrB sequence typing.
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- Journal of Antimicrobial Chemotherapy (JAC), 2008, v. 61, n. 4, p. 959, doi. 10.1093/jac/dkn021
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- Publication type:
- Article
An analysis of the positional distribution of DNA motifs in promoter regions and its biological relevance.
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- BMC Bioinformatics, 2008, v. 9, p. 1, doi. 10.1186/1471-2105-9-89
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- Publication type:
- Article
Parameter optimization in S-system models.
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- BMC Systems Biology, 2008, v. 2, p. 1, doi. 10.1186/1752-0509-2-35
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- Article
Local Renyi entropic profiles of DNA sequences.
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- BMC Bioinformatics, 2007, v. 8, p. 393, doi. 10.1186/1471-2105-8-393
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- Publication type:
- Article
Assessment of allelic variation in the ccrAB locus in methicillin-resistant Staphylococcus aureus clones.
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- Journal of Antimicrobial Chemotherapy (JAC), 2006, v. 58, n. 1, p. 23, doi. 10.1093/jac/dkl208
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- Publication type:
- Article