Works by Vila, Arnau Vich

Results: 23

Transmission and dynamics of mother-infant gut viruses during pregnancy and early life.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-45257-4

By:

Garmaeva, Sanzhima;
Sinha, Trishla;
Gulyaeva, Anastasia;
Kuzub, Nataliia;
Spreckels, Johanne E.;
Andreu-Sánchez, Sergio;
Gacesa, Ranko;
Vich Vila, Arnau;
Brushett, Siobhan;
Kruk, Marloes;
Lifelines NEXT cohort study;
Dotinga, Aafje;
Gordijn, Sanne;
Jankipersadsing, Soesma;
de Jonge, Ank;
de Kroon, Marlou L. A.;
Koppelman, Gerard H.;
Peters, Lilian L.;
Prins, Jelmer R.;
Reijneveld, Sijmen A.

Publication type:

Article

Mucosal host-microbe interactions associate with clinical phenotypes in inflammatory bowel disease.

Published in:

Nature Communications, 2024, v. 15, n. 1, p. 1, doi. 10.1038/s41467-024-45855-2

By:

Hu, Shixian;
Bourgonje, Arno R.;
Gacesa, Ranko;
Jansen, Bernadien H.;
Björk, Johannes R.;
Bangma, Amber;
Hidding, Iwan J.;
van Dullemen, Hendrik M.;
Visschedijk, Marijn C.;
Faber, Klaas Nico;
Dijkstra, Gerard;
Harmsen, Hermie J. M.;
Festen, Eleonora A. M.;
Vich Vila, Arnau;
Spekhorst, Lieke M.;
Weersma, Rinse K.

Publication type:

Article

Health-related quality of life is linked to the gut microbiome in kidney transplant recipients.

Published in:

Nature Communications, 2023, v. 14, n. 1, p. 1, doi. 10.1038/s41467-023-43431-8

By:

Swarte, J. Casper;
Knobbe, Tim J.;
Björk, Johannes R.;
Gacesa, Ranko;
Nieuwenhuis, Lianne M.;
Zhang, Shuyan;
Vila, Arnau Vich;
Kremer, Daan;
Douwes, Rianne M.;
Post, Adrian;
Quint, Evelien E.;
Pol, Robert A.;
Jansen, Bernadien H.;
Annema, C.;
Bodewes, F. A. J. A.;
de Boer, M. T.;
Damman, K.;
Diepstra, A.;
Dijkstra, G.;
Doorenbos, C. S. E.

Publication type:

Article

Gut microbiota in inflammatory bowel diseases: moving from basic science to clinical applications.

Published in:

Human Genetics, 2021, v. 140, n. 5, p. 703, doi. 10.1007/s00439-020-02218-3

By:

Collij, Valerie;
Klaassen, Marjolein A. Y.;
Weersma, Rinse K.;
Vila, Arnau Vich

Publication type:

Article

Pharmacomicrobiomics: a novel route towards personalized medicine?

Published in:

Protein & Cell, 2018, v. 9, n. 5, p. 432, doi. 10.1007/s13238-018-0547-2

By:

Doestzada, Marwah;
Vila, Arnau Vich;
Zhernakova, Alexandra;
Koonen, Debby P. Y.;
Weersma, Rinse K.;
Touw, Daan J.;
Kuipers, Folkert;
Wijmenga, Cisca;
Fu, Jingyuan

Publication type:

Article

SLC39A8 missense variant is associated with Crohn's disease but does not have a major impact on gut microbiome composition in healthy subjects.

Published in:

PLoS ONE, 2019, v. 14, n. 1, p. 1, doi. 10.1371/journal.pone.0211328

By:

Collij, Valerie;
Imhann, Floris;
Vich Vila, Arnau;
Fu, Jingyuan;
Dijkstra, Gerard;
Festen, Eleonora A. M.;
Voskuil, Michiel D.;
Daly, Mark J.;
Xavier, Ramnik J.;
Wijmenga, Cisca;
Zhernakova, Alexandra;
Weersma, Rinse K.

Publication type:

Article

Gut microbiome dysbiosis is associated with increased mortality after solid organ transplantation.

Published in:

Science Translational Medicine, 2022, v. 14, n. 660, p. 1, doi. 10.1126/scitranslmed.abn7566

By:

Swarte, J. Casper;
Li, Yanni;
Hu, Shixian;
Björk, Johannes R.;
Gacesa, Ranko;
Vich Vila, Arnau;
Douwes, Rianne M.;
Collij, Valerie;
Kurilshikov, Alexander;
Post, Adrian;
Klaassen, Marjolein A. Y.;
Eisenga, Michele F.;
Gomes-Neto, António W.;
Kremer, Daan;
Jansen, Bernadien H.;
Knobbe, Tim J.;
Berger, Stefan P.;
Sanders, Jan-Stephan F.;
Heiner-Fokkema, M. Rebecca;
Porte, Robert J.

Publication type:

Article

Gut microbiota composition and functional changes in inflammatory bowel disease and irritable bowel syndrome.

Published in:

Science Translational Medicine, 2018, v. 10, n. 472, p. N.PAG, doi. 10.1126/scitranslmed.aap8914

By:

Vich Vila, Arnau;
Imhann, Floris;
Collij, Valerie;
Jankipersadsing, Soesma A.;
Gurry, Thomas;
Mujagic, Zlatan;
Kurilshikov, Alexander;
Bonder, Marc Jan;
Jiang, Xiaofang;
Tigchelaar, Ettje F.;
Dekens, Jackie;
Peters, Vera;
Voskuil, Michiel D.;
Visschedijk, Marijn C.;
van Dullemen, Hendrik M.;
Keszthelyi, Daniel;
Swertz, Morris A.;
Franke, Lude;
Alberts, Rudi;
Festen, Eleonora A. M.

Publication type:

Article

The emerging role of the small intestinal microbiota in human health and disease.

Published in:

Gut Microbes, 2023, v. 15, n. 1, p. 1, doi. 10.1080/19490976.2023.2201155

By:

Ruigrok, Renate A. A. A.;
Weersma, Rinse K.;
Vila, Arnau Vich

Publication type:

Article

Inulin-grown Faecalibacterium prausnitzii cross-feeds fructose to the human intestinal epithelium.

Published in:

Gut Microbes, 2021, v. 13, n. 1, p. 1, doi. 10.1080/19490976.2021.1993582

By:

Fagundes, Raphael R.;
Bourgonje, Arno R.;
Saeed, Ali;
Vich Vila, Arnau;
Plomp, Niels;
Blokzijl, Tjasso;
Sadaghian Sadabad, Mehdi;
von Martels, Julius Z. H.;
van Leeuwen, Sander S.;
Weersma, Rinse K.;
Dijkstra, Gerard;
Harmsen, Hermie J. M.;
Faber, Klaas Nico

Publication type:

Article

Analysis of 1135 gut metagenomes identifies sex-specific resistome profiles.

Published in:

Gut Microbes, 2019, v. 10, n. 3, p. 358, doi. 10.1080/19490976.2018.1528822

By:

Sinha, Trishla;
Vich Vila, Arnau;
Garmaeva, Sanzhima;
Jankipersadsing, Soesma A.;
Imhann, Floris;
Collij, Valerie;
Bonder, Marc Jan;
Jiang, Xiaofang;
Gurry, Thomas;
Alm, Eric J.;
D'Amato, Mauro;
Weersma, Rinse K.;
Scherjon, Sicco;
Wijmenga, Cisca;
Fu, Jingyuan;
Kurilshikov, Alexander;
Zhernakova, Alexandra

Publication type:

Article

The influence of proton pump inhibitors and other commonly used medication on the gut microbiota.

Published in:

Gut Microbes, 2017, v. 8, n. 4, p. 351, doi. 10.1080/19490976.2017.1284732

By:

Imhann, Floris;
Vich Vila, Arnau;
Bonder, Marc Jan;
Lopez Manosalva, Ailine G.;
Koonen, Debby P.Y.;
Fu, Jingyuan;
Wijmenga, Cisca;
Zhernakova, Alexandra;
Weersma, Rinse K.

Publication type:

Article

Effect of Phenotype and Genotype on the Plasma Proteome in Patients with Inflammatory Bowel Disease.

Published in:

Journal of Crohn's & Colitis, 2022, v. 16, n. 3, p. 414, doi. 10.1093/ecco-jcc/jjab157

By:

Bourgonje, Arno R;
Hu, Shixian;
Spekhorst, Lieke M;
Zhernakova, Daria V;
Vila, Arnau Vich;
Li, Yanni;
Voskuil, Michiel D;
Berkel, Lisette A van;
Folly, Brenda Bley;
Charrout, Mohammed;
Mahfouz, Ahmed;
Reinders, Marcel J T;
Heck, Julia I P van;
Joosten, Leo A B;
Visschedijk, Marijn C;
Dullemen, Hendrik M van;
Faber, Klaas Nico;
Samsom, Janneke N;
Festen, Eleonora A M;
Dijkstra, Gerard

Publication type:

Article

The Composition and Metabolic Potential of the Human Small Intestinal Microbiota Within the Context of Inflammatory Bowel Disease.

Published in:

Journal of Crohn's & Colitis, 2021, v. 15, n. 8, p. 1326, doi. 10.1093/ecco-jcc/jjab020

By:

Ruigrok, Renate A A A;
Collij, Valerie;
Sureda, Paula;
Klaassen, Marjolein A Y;
Bolte, Laura A;
Jansen, Bernadien H;
Voskuil, Michiel D;
Fu, Jingyuan;
Wijmenga, Cisca;
Zhernakova, Alexandra;
Weersma, Rinse K;
Vila, Arnau Vich

Publication type:

Article

Riboflavin Supplementation in Patients with Crohn's Disease [the RISE-UP study].

Published in:

Journal of Crohn's & Colitis, 2020, v. 14, n. 5, p. 595, doi. 10.1093/ecco-jcc/jjz208

By:

Martels, Julius Z H von;
Bourgonje, Arno R;
Klaassen, Marjolein A Y;
Alkhalifah, Hassan A A;
Sadabad, Mehdi Sadaghian;
Vila, Arnau Vich;
Gacesa, Ranko;
Gabriëls, Ruben Y;
Steinert, Robert E;
Jansen, Bernadien H;
Bulthuis, Marian L C;
Dullemen, Hendrik M van;
Visschedijk, Marijn C;
Festen, Eleonora A M;
Weersma, Rinse K;
Vos, Paul de;
Goor, Harry van;
Faber, Klaas Nico;
Harmsen, Hermie J M;
Dijkstra, Gerard

Publication type:

Article

Anti-inflammatory Gut Microbial Pathways Are Decreased During Crohn's Disease Exacerbations.

Published in:

Journal of Crohn's & Colitis, 2019, v. 13, n. 11, p. 1439, doi. 10.1093/ecco-jcc/jjz077

By:

Klaassen, Marjolein A Y;
Imhann, Floris;
Collij, Valerie;
Fu, Jingyuan;
Wijmenga, Cisca;
Zhernakova, Alexandra;
Dijkstra, Gerard;
Festen, Eleonora A M;
Gacesa, Ranko;
Vila, Arnau Vich;
Weersma, Rinse K

Publication type:

Article

Patient attitudes towards faecal sampling for gut microbiome studies and clinical care reveal positive engagement and room for improvement.

Published in:

PLoS ONE, 2021, v. 16, n. 4, p. 1, doi. 10.1371/journal.pone.0249405

By:

Bolte, Laura A.;
Klaassen, Marjolein A. Y.;
Collij, Valerie;
Vich Vila, Arnau;
Fu, Jingyuan;
van der Meulen, Taco A.;
de Haan, Jacco J.;
Versteegen, Gerbrig J.;
Dotinga, Aafje;
Zhernakova, Alexandra;
Wijmenga, Cisca;
Weersma, Rinse K.;
Imhann, Floris

Publication type:

Article

Characteristics and Dysbiosis of the Gut Microbiome in Renal Transplant Recipients.

Published in:

Journal of Clinical Medicine, 2020, v. 9, n. 2, p. 386, doi. 10.3390/jcm9020386

By:

Swarte, J. Casper;
Douwes, Rianne M.;
Hu, Shixian;
Vich Vila, Arnau;
Eisenga, Michele F.;
van Londen, Marco;
Gomes-Neto, António W.;
Weersma, Rinse K.;
Harmsen, Hermie J.M.;
Bakker, Stephan J.L.

Publication type:

Article

Inflammation status modulates the effect of host genetic variation on intestinal gene expression in inflammatory bowel disease.

Published in:

Nature Communications, 2021, v. 12, n. 1, p. 1, doi. 10.1038/s41467-021-21458-z

By:

Hu, Shixian;
Uniken Venema, Werna T.;
Westra, Harm-Jan;
Vich Vila, Arnau;
Barbieri, Ruggero;
Voskuil, Michiel D.;
Blokzijl, Tjasso;
Jansen, Bernadien H.;
Li, Yanni;
Daly, Mark J.;
Xavier, Ramnik J.;
Dijkstra, Gerard;
Festen, Eleonora A.;
Weersma, Rinse K.

Publication type:

Article

Gut microbial co-abundance networks show specificity in inflammatory bowel disease and obesity.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-020-17840-y

By:

Chen, Lianmin;
Collij, Valerie;
Jaeger, Martin;
van den Munckhof, Inge C. L.;
Vich Vila, Arnau;
Kurilshikov, Alexander;
Gacesa, Ranko;
Sinha, Trishla;
Oosting, Marije;
Joosten, Leo A. B.;
Rutten, Joost H. W.;
Riksen, Niels P.;
Xavier, Ramnik J.;
Kuipers, Folkert;
Wijmenga, Cisca;
Zhernakova, Alexandra;
Netea, Mihai G.;
Weersma, Rinse K.;
Fu, Jingyuan

Publication type:

Article

Impact of commonly used drugs on the composition and metabolic function of the gut microbiota.

Published in:

Nature Communications, 2020, v. 11, n. 1, p. 1, doi. 10.1038/s41467-019-14177-z

By:

Vich Vila, Arnau;
Collij, Valerie;
Sanna, Serena;
Sinha, Trishla;
Imhann, Floris;
Bourgonje, Arno R.;
Mujagic, Zlatan;
Jonkers, Daisy M. A. E.;
Masclee, Ad A. M.;
Fu, Jingyuan;
Kurilshikov, Alexander;
Wijmenga, Cisca;
Zhernakova, Alexandra;
Weersma, Rinse K.

Publication type:

Article

Diversity and Ecology of Caudoviricetes Phages with Genome Terminal Repeats in Fecal Metagenomes from Four Dutch Cohorts.

Published in:

Viruses (1999-4915), 2022, v. 14, n. 10, p. N.PAG, doi. 10.3390/v14102305

By:

Gulyaeva, Anastasia;
Garmaeva, Sanzhima;
Kurilshikov, Alexander;
Vich Vila, Arnau;
Riksen, Niels P.;
Netea, Mihai G.;
Weersma, Rinse K.;
Fu, Jingyuan;
Zhernakova, Alexandra

Publication type:

Article

Dysbiosis of the buccal mucosa microbiome in primary Sjögren's syndrome patients.

Published in:

Rheumatology, 2018, v. 57, n. 12, p. 2225, doi. 10.1093/rheumatology/key215

By:

Meulen, Taco A van der;
Harmsen, Hermie J M;
Bootsma, Hendrika;
Liefers, Silvia C;
Vila, Arnau Vich;
Zhernakova, Alexandra;
Fu, Jingyuan;
Wijmenga, Cisca;
Spijkervet, Fred K L;
Kroese, Frans G M

Publication type:

Article