Works by Vikalo, Haris

Results: 12

Real-time DNA microarray analysis.

Published in:

Nucleic Acids Research, 2009, v. 37, n. 20, p. e132, doi. 10.1093/nar/gkp675

By:

Hassibi, Arjang;
Vikalo, Haris;
Riechmann, José Luis;
Hassibi, Babak

Publication type:

Article

SDhaP: haplotype assembly for diploids and polyploids via semi-definite programming.

Published in:

BMC Genomics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12864-015-1408-5

By:

Das, Shreepriya;
Vikalo, Haris

Publication type:

Article

Sparse Tensor Decomposition for Haplotype Assembly of Diploids and Polyploids.

Published in:

BMC Genomics, 2018, v. 19, p. 1, doi. 10.1186/s12864-018-4551-y

By:

Hashemi, Abolfazl;
Zhu, Banghua;
Vikalo, Haris

Publication type:

Article

OnlineCall: fast online parameter estimation and base calling for illumina's next-generation sequencing.

Published in:

Bioinformatics, 2012, v. 28, n. 13, p. 1677, doi. 10.1093/bioinformatics/bts256

By:

Das, Shreepriya;
Vikalo, Haris

Publication type:

Article

Multiplexed identification, quantification and genotyping of infectious agents using a semiconductor biochip.

Published in:

Nature Biotechnology, 2022, v. 40, n. 8, p. 738, doi. 10.1038/nbt.4179

By:

Hassibi, Arjang;
Manickam, Arun;
Singh, Rituraj;
Bolouki, Sara;
Sinha, Ruma;
Jirage, Kshama B;
McDermott, Mark W;
Hassibi, Babak;
Vikalo, Haris;
Mazarei, Gelareh;
Pei, Lei;
Bousse, Luc;
Miller, Mark;
Heshami, Mehrdad;
Savage, Michael P;
Taylor, Michael T;
Gamini, Nader;
Wood, Nicholas;
Mantina, Pallavi;
Grogan, Patrick

Publication type:

Article

Multiplexed identification, quantification and genotyping of infectious agents using a semiconductor biochip.

Published in:

Nature Biotechnology, 2018, v. 36, n. 8, p. 738, doi. 10.1038/nbt.4179

By:

Hassibi, Arjang;
Manickam, Arun;
Singh, Rituraj;
Bolouki, Sara;
Sinha, Ruma;
Jirage, Kshama B;
McDermott, Mark W;
Hassibi, Babak;
Vikalo, Haris;
Mazarei, Gelareh;
Pei, Lei;
Bousse, Luc;
Miller, Mark;
Heshami, Mehrdad;
Savage, Michael P;
Taylor, Michael T;
Gamini, Nader;
Wood, Nicholas;
Mantina, Pallavi;
Grogan, Patrick

Publication type:

Article

Joint haplotype assembly and genotype calling via sequential Monte Carlo algorithm.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0651-8

By:

Soyeon Ahn;
Vikalo, Haris

Publication type:

Article

Joint haplotype assembly and genotype calling via sequential Monte Carlo algorithm.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 223, doi. 10.1186/s12859-015-0651-8

By:

Ahn, Soyeon;
Vikalo, Haris

Publication type:

Article

Base calling for high-throughput short-read sequencing: dynamic programming solutions.

Published in:

BMC Bioinformatics, 2013, v. 14, n. 1, p. 1, doi. 10.1186/1471-2105-14-129

By:

Das, Shreepriya;
Vikalo, Haris

Publication type:

Article

Viral quasispecies reconstruction via tensor factorization with successive read removal.

Published in:

Bioinformatics, 2018, v. 34, n. 13, p. i23, doi. 10.1093/bioinformatics/bty291

By:

Ahn, Soyeon;
Ke, Ziqi;
Vikalo, Haris

Publication type:

Article

XHap: haplotype assembly using long-distance read correlations learned by transformers.

Published in:

Bioinformatics Advances, 2023, v. 3, n. 1, p. 1, doi. 10.1093/bioadv/vbad169

By:

Consul, Shorya;
Ke, Ziqi;
Vikalo, Haris

Publication type:

Article

ComHapDet: a spatial community detection algorithm for haplotype assembly.

Published in:

BMC Genomics, 2020, v. 21, p. N.PAG, doi. 10.1186/s12864-020-06935-x

By:

Sankararaman, Abishek;
Vikalo, Haris;
Baccelli, François

Publication type:

Article