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Integration of background knowledge for automatic detection of inconsistencies in gene ontology annotation.
- Published in:
- Bioinformatics, 2024, v. 40, p. i390, doi. 10.1093/bioinformatics/btae246
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- Article
Performance of ICD-10-AM codes for quality improvement monitoring of hospital-acquired pneumonia in a haematology-oncology casemix in Victoria, Australia.
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- Health Information Management Journal, 2024, v. 53, n. 2, p. 112, doi. 10.1177/18333583221131753
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- Article
We need to chat about artificial intelligence.
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- Medical Journal of Australia, 2023, v. 219, n. 3, p. 98, doi. 10.5694/mja2.51992
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- Article
Classifying literature mentions of biological pathogens as experimentally studied using natural language processing.
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- Journal of Biomedical Semantics, 2023, v. 14, n. 1, p. 1, doi. 10.1186/s13326-023-00282-y
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- Article
Predicting Publication of Clinical Trials Using Structured and Unstructured Data: Model Development and Validation Study.
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- Journal of Medical Internet Research, 2022, v. 24, n. 12, p. N.PAG, doi. 10.2196/38859
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- Article
MPVNN: Mutated Pathway Visible Neural Network architecture for interpretable prediction of cancer-specific survival risk.
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- Bioinformatics, 2022, v. 38, n. 22, p. 5026, doi. 10.1093/bioinformatics/btac636
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- Article
Propagation, detection and correction of errors using the sequence database network.
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- Briefings in Bioinformatics, 2022, v. 23, n. 6, p. 1, doi. 10.1093/bib/bbac416
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- Article
Tasks as needs: reframing the paradigm of clinical natural language processing research for real-world decision support.
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- 2022
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- Publication type:
- journal article
Exploring automatic inconsistency detection for literature-based gene ontology annotation.
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- Bioinformatics, 2022, v. 38, p. i273, doi. 10.1093/bioinformatics/btac230
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- Article
Use of a Victorian statewide surveillance programme to evaluate the burden of healthcare‐associated Staphylococcus aureus bacteraemia and Clostridioides difficile infection in patients with cancer.
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- Internal Medicine Journal, 2022, v. 52, n. 7, p. 1215, doi. 10.1111/imj.15301
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- Article
Detection of self-harm and suicidal ideation in emergency department triage notes.
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- 2022
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- Publication type:
- journal article
COVID-19 Drug Repurposing: A Network-Based Framework for Exploring Biomedical Literature and Clinical Trials for Possible Treatments.
- Published in:
- Pharmaceutics, 2022, v. 14, n. 3, p. 567, doi. 10.3390/pharmaceutics14030567
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- Article
Evaluating the dose, indication and agreement with guidelines of antimicrobial use in companion animal practice with natural language processing.
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- JAC-Antimicrobial Resistance, 2022, v. 4, n. 1, p. 1, doi. 10.1093/jacamr/dlab194
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- Article
Accuracy of Machine Learning Assisted Detection of Keratoconus: A Systematic Review and Meta-Analysis.
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- Journal of Clinical Medicine, 2022, v. 11, n. 3, p. 478, doi. 10.3390/jcm11030478
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- Publication type:
- Article
Large-scale protein-protein post-translational modification extraction with distant supervision and confidence calibrated BioBERT.
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- BMC Bioinformatics, 2022, v. 23, n. 1, p. 1, doi. 10.1186/s12859-021-04504-x
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- Article
ChemTables: a dataset for semantic classification on tables in chemical patents.
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- Journal of Cheminformatics, 2021, v. 13, n. 1, p. 1, doi. 10.1186/s13321-021-00568-2
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- Article
Automatic consistency assurance for literature-based gene ontology annotation.
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- BMC Bioinformatics, 2021, v. 22, n. 1, p. 1, doi. 10.1186/s12859-021-04479-9
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- Article
Evaluation of consensus strategies for haplotype phasing.
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- Briefings in Bioinformatics, 2021, v. 22, n. 4, p. 1, doi. 10.1093/bib/bbaa280
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- Article
Early prediction of diagnostic-related groups and estimation of hospital cost by processing clinical notes.
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- NPJ Digital Medicine, 2021, v. 4, n. 1, p. 1, doi. 10.1038/s41746-021-00474-9
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- Article
Development of a Self-Harm Monitoring System for Victoria.
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- International Journal of Environmental Research & Public Health, 2020, v. 17, n. 24, p. 9385, doi. 10.3390/ijerph17249385
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- Article
Burden and clinical outcomes of hospital-coded infections in patients with cancer: an 11-year longitudinal cohort study at an Australian cancer centre.
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- Supportive Care in Cancer, 2020, v. 28, n. 12, p. 6023, doi. 10.1007/s00520-020-05439-4
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- Article
Use of cefovecin in dogs and cats attending first-opinion veterinary practices in Australia.
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- Veterinary Record: Journal of the British Veterinary Association, 2020, v. 187, n. 11, p. 1, doi. 10.1136/vr.105997
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- Article
PoLoBag: Polynomial Lasso Bagging for signed gene regulatory network inference from expression data.
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- Bioinformatics, 2020, v. 36, n. 21, p. 5187, doi. 10.1093/bioinformatics/btaa651
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- Article
Classification performance of administrative coding data for detection of invasive fungal infection in paediatric cancer patients.
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- PLoS ONE, 2020, v. 15, n. 9, p. 1, doi. 10.1371/journal.pone.0238889
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- Article
A Multi-pass Sieve for Clinical Concept Normalization.
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- Traitement Automatique des Langues, 2020, v. 61, n. 2, p. 41
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- Article
Describing the antimicrobial usage patterns of companion animal veterinary practices; free text analysis of more than 4.4 million consultation records.
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- PLoS ONE, 2020, v. 15, n. 3, p. 1, doi. 10.1371/journal.pone.0230049
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- Article
The current scope of healthcare-associated infection surveillance activities in hospitalized immunocompromised patients: a systematic review.
- Published in:
- 2019
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- Publication type:
- journal article
Exploring effective approaches for haplotype block phasing.
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- BMC Bioinformatics, 2019, v. 20, n. 1, p. N.PAG, doi. 10.1186/s12859-019-3095-8
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- Publication type:
- Article
Automated assessment of biological database assertions using the scientific literature.
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- BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-2801-x
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- Article
From POS tagging to dependency parsing for biomedical event extraction.
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- BMC Bioinformatics, 2019, v. 20, n. 1, p. 1, doi. 10.1186/s12859-019-2604-0
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- Article
Overview of the BioCreative VI Precision Medicine Track: mining protein interactions and mutations for precision medicine.
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- Database: The Journal of Biological Databases & Curation, 2019, v. 2019, p. N.PAG, doi. 10.1093/database/bay147
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- Article
The Use of Web-Based Technologies in Health Research Participation: Qualitative Study of Consumer and Researcher Experiences.
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- 2018
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- Publication type:
- journal article
Appraising the Quality of Systematic Reviews for Age-Related Macular Degeneration Interventions: A Systematic Review.
- Published in:
- 2018
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- Publication type:
- journal article
A two-tiered unsupervised clustering approach for drug repositioning through heterogeneous data integration.
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- BMC Bioinformatics, 2018, v. 19, p. 1, doi. 10.1186/s12859-018-2123-4
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- Article
The randomized information coefficient: assessing dependencies in noisy data.
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- Machine Learning, 2018, v. 107, n. 3, p. 509, doi. 10.1007/s10994-017-5664-2
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- Article
Exploiting graph kernels for high performance biomedical relation extraction.
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- Journal of Biomedical Semantics, 2018, v. 9, p. 1, doi. 10.1186/s13326-017-0168-3
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- Publication type:
- Article
BioCreative VI Precision Medicine Track system performance is constrained by entity recognition and variations in corpus characteristics.
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- Database: The Journal of Biological Databases & Curation, 2018, v. 2018, p. 1, doi. 10.1093/database/bay122
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- Article
Coreference annotation and resolution in the Colorado Richly Annotated Full Text (CRAFT) corpus of biomedical journal articles.
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- BMC Bioinformatics, 2017, v. 18, n. 1, p. 1, doi. 10.1186/s12859-017-1775-9
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- Article
Positive-Unlabeled Learning for inferring drug interactions based on heterogeneous attributes.
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- BMC Bioinformatics, 2017, v. 18, p. 1, doi. 10.1186/s12859-017-1546-7
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- Article
Literature consistency of bioinformatics sequence databases is effective for assessing record quality.
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- Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax021
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- Publication type:
- Article
Multi-field query expansion is effective for biomedical dataset retrieval.
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- Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/bax062
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- Publication type:
- Article
Duplicates, redundancies and inconsistencies in the primary nucleotide databases: a descriptive study.
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- Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/baw163
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- Article
Benchmarks for measurement of duplicate detection methods in nucleotide databases.
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- Database: The Journal of Biological Databases & Curation, 2017, v. 2017, n. 1, p. 1, doi. 10.1093/database/baw164
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- Publication type:
- Article
Thematic issue of the Second combined Bio-ontologies and Phenotypes Workshop.
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- Journal of Biomedical Semantics, 2016, v. 7, p. 1, doi. 10.1186/s13326-016-0108-7
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- Article
A physarum-inspired prize-collecting steiner tree approach to identify subnetworks for drug repositioning.
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- BMC Systems Biology, 2016, v. 10, p. 25, doi. 10.1186/s12918-016-0371-3
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- Publication type:
- Article
The Pre-Eclampsia Ontology: A Disease Ontology Representing the Domain Knowledge Specific to Pre-Eclampsia.
- Published in:
- PLoS ONE, 2016, v. 11, n. 10, p. 1, doi. 10.1371/journal.pone.0162828
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- Article
Gene Ontology synonym generation rules lead to increased performance in biomedical concept recognition.
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- Journal of Biomedical Semantics, 2016, p. 1, doi. 10.1186/s13326-016-0096-7
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- Article
An expanded evaluation of protein function prediction methods shows an improvement in accuracy.
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- Genome Biology, 2016, v. 17, p. 1, doi. 10.1186/s13059-016-1037-6
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- Publication type:
- Article
Supervised Learning for Detection of Duplicates in Genomic Sequence Databases.
- Published in:
- PLoS ONE, 2016, v. 11, n. 8, p. 1, doi. 10.1371/journal.pone.0159644
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- Article
Establishing a baseline for literature mining human genetic variants and their relationships to disease cohorts.
- Published in:
- 2016
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- Publication type:
- journal article