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Works by Vermeulen, Carlo

Results: 6

1

Direct detection of 8-oxo-dG using nanopore sequencing.

Published in:

Nature Communications, 2025, v. 16, n. 1, p. 1, doi. 10.1038/s41467-025-60391-3

By:

Pagès-Gallego, Marc;
van Soest, Daan M. K.;
Besselink, Nicolle J. M.;
Straver, Roy;
Keijer, Janneke P.;
Vermeulen, Carlo;
Marcozzi, Alessio;
van Roosmalen, Markus J.;
van Boxtel, Ruben;
Burgering, Boudewijn M. T.;
Dansen, Tobias B.;
de Ridder, Jeroen

Publication type:

Article

2

ReQuant: improved base modification calling by k-mer value imputation Open Access.

Published in:

Nucleic Acids Research, 2025, v. 53, n. 9, p. 1, doi. 10.1093/nar/gkaf323

By:

Straver, Roy;
Vermeulen, Carlo;
Verity-Legg, Joe R;
Pagès-Gallego, Marc;
Stoker, Dieter G G;
van Oudenaarden, Alexander;
de Ridder, Jeroen

Publication type:

Article

3

The genome-wide mutational consequences of DNA hypomethylation.

Published in:

Scientific Reports, 2023, v. 13, n. 1, p. 1, doi. 10.1038/s41598-023-33932-3

By:

Besselink, Nicolle;
Keijer, Janneke;
Vermeulen, Carlo;
Boymans, Sander;
de Ridder, Jeroen;
van Hoeck, Arne;
Cuppen, Edwin;
Kuijk, Ewart

Publication type:

Article

4

Multi-contact 4C: long-molecule sequencing of complex proximity ligation products to uncover local cooperative and competitive chromatin topologies.

Published in:

Nature Protocols, 2020, v. 15, n. 2, p. 364, doi. 10.1038/s41596-019-0242-7

By:

Vermeulen, Carlo;
Allahyar, Amin;
Bouwman, Britta A. M.;
Krijger, Peter H. L.;
Verstegen, Marjon J. A. M.;
Geeven, Geert;
Valdes-Quezada, Christian;
Renkens, Ivo;
Straver, Roy;
Kloosterman, Wigard P.;
de Ridder, Jeroen;
de Laat, Wouter

Publication type:

Article

5

Glioblastoma, IDH-wildtype with primarily leptomeningeal localization diagnosed by nanopore sequencing of cell-free DNA from cerebrospinal fluid.

Published in:

Acta Neuropathologica, 2024, v. 148, n. 1, p. 1, doi. 10.1007/s00401-024-02792-0

By:

Sol, Nik;
Kooi, Evert-Jan;
Pagès-Gallego, Marc;
Brandsma, Dieta;
Bugiani, Marianna;
de Ridder, Jeroen;
Wesseling, Pieter;
Vermeulen, Carlo

Publication type:

Article

6

NGS-based Aspergillus detection in plasma and lung lavage of children with invasive pulmonary aspergillosis.

Published in:

NPJ Genomic Medicine, 2025, v. 10, n. 1, p. 1, doi. 10.1038/s41525-025-00482-8

By:

Wesdorp, Emmy;
Rotte, Laura;
Chen, Li-Ting;
Jager, Myrthe;
Besselink, Nicolle;
Vermeulen, Carlo;
Hagen, Ferry;
van der Bruggen, Tjomme;
Lindemans, Caroline;
Wolfs, Tom;
Bont, Louis;
de Ridder, Jeroen

Publication type:

Article