Works by Verdier, Jerome

Results: 35

Genetic Variability in Seed Longevity and Germination Traits in a Tomato MAGIC Population in Contrasting Environments.

Published in:

Plants (2223-7747), 2023, v. 12, n. 20, p. 3632, doi. 10.3390/plants12203632

By:

Bizouerne, Elise;
Ly Vu, Joseph;
Ly Vu, Benoît;
Diouf, Isidore;
Bitton, Frédérique;
Causse, Mathilde;
Verdier, Jérôme;
Buitink, Julia;
Leprince, Olivier

Publication type:

Article

Seed Transmission of Pathogens: Non-Canonical Immune Response in Arabidopsis Germinating Seeds Compared to Early Seedlings against the Necrotrophic Fungus Alternaria brassicicola.

Published in:

Plants (2223-7747), 2022, v. 11, n. 13, p. 1708, doi. 10.3390/plants11131708

By:

Ortega-Cuadros, Mailen;
De Souza, Tiago Lodi;
Berruyer, Romain;
Aligon, Sophie;
Pelletier, Sandra;
Renou, Jean-Pierre;
Arias, Tatiana;
Campion, Claire;
Guillemette, Thomas;
Verdier, Jérome;
Grappin, Philippe

Publication type:

Article

Medicago ABI3 Splicing Isoforms Regulate the Expression of Different Gene Clusters to Orchestrate Seed Maturation.

Published in:

Plants (2223-7747), 2021, v. 10, n. 8, p. 1710, doi. 10.3390/plants10081710

By:

Lalanne, David;
Malabarba, Jaiana;
Ly Vu, Joseph;
Hundertmark, Michaela;
Delahaie, Julien;
Leprince, Olivier;
Buitink, Julia;
Verdier, Jerome

Publication type:

Article

Physical Dormancy Release in Medicago truncatula Seeds Is Related to Environmental Variations.

Published in:

Plants (2223-7747), 2020, v. 9, n. 4, p. 503, doi. 10.3390/plants9040503

By:

Renzi, Juan Pablo;
Duchoslav, Martin;
Brus, Jan;
Hradilová, Iveta;
Pechanec, Vilém;
Václavek, Tadeáš;
Machalová, Jitka;
Hron, Karel;
Verdier, Jerome;
Smýkal, Petr

Publication type:

Article

Genome-wide association study identified candidate genes for seed size and seed composition improvement in M. truncatula.

Published in:

Scientific Reports, 2021, v. 11, n. 1, p. 1, doi. 10.1038/s41598-021-83581-7

By:

Chen, Zhijuan;
Lancon-Verdier, Vanessa;
Le Signor, Christine;
She, Yi-Min;
Kang, Yun;
Verdier, Jerome

Publication type:

Article

Genome-Wide Association Studies of Seed Performance Traits in Response to Heat Stress in Medicago truncatula Uncover MIEL1 as a Regulator of Seed Germination Plasticity.

Published in:

Frontiers in Plant Science, 2021, v. 12, p. 1, doi. 10.3389/fpls.2021.673072

By:

Chen, Zhijuan;
Ly Vu, Joseph;
Ly Vu, Benoit;
Buitink, Julia;
Leprince, Olivier;
Verdier, Jerome

Publication type:

Article

The 'atom-splitting' moment of synthetic biology. Nuclear physics and synthetic biology share common features.

Published in:

EMBO Reports, 2012, v. 13, n. 8, p. 677, doi. 10.1038/embor.2012.95

By:

Valentine, Alex J;
Kleinert, Aleysia;
Verdier, Jerome

Publication type:

Article

Inference of Longevity-Related Genes from a Robust Coexpression Network of Seed Maturation Identifies Regulators Linking Seed Storability to Biotic Defense-Related Pathways.

Published in:

Plant Cell, 2015, v. 27, n. 10, p. 2692, doi. 10.1105/tpc.15.00632

By:

Righetti, Karima;
Vu, Joseph Ly;
Pelletier, Sandra;
Vu, Benoit Ly;
Glaab, Enrico;
Lalanne, David;
Pasha, Asher;
Patel, Rohan V.;
Provart, Nicholas J.;
Verdier, Jerome;
Leprince, Olivier;
Buitink, Julia

Publication type:

Article

Utilization of computer vision and multispectral imaging techniques for classification of cowpea (Vigna unguiculata) seeds.

Published in:

Plant Methods, 2019, v. 15, n. 1, p. N.PAG, doi. 10.1186/s13007-019-0411-2

By:

ElMasry, Gamal;
Mandour, Nasser;
Wagner, Marie-Hélène;
Demilly, Didier;
Verdier, Jerome;
Belin, Etienne;
Rousseau, David

Publication type:

Article

Gene co-expression analysis of tomato seed maturation reveals tissue-specific regulatory networks and hubs associated with the acquisition of desiccation tolerance and seed vigour.

Published in:

BMC Plant Biology, 2021, v. 21, n. 1, p. 1, doi. 10.1186/s12870-021-02889-8

By:

Bizouerne, Elise;
Buitink, Julia;
Vu, Benoît Ly;
Vu, Joseph Ly;
Esteban, Eddi;
Pasha, Asher;
Provart, Nicholas;
Verdier, Jérôme;
Leprince, Olivier

Publication type:

Article

MtExpress, a Comprehensive and Curated RNAseq-based Gene Expression Atlas for the Model Legume Medicago truncatula.

Published in:

Plant & Cell Physiology, 2021, v. 62, n. 9, p. 1494, doi. 10.1093/pcp/pcab110

By:

Carrere, Sebastien;
Verdier, Jerome;
Gamas, Pascal

Publication type:

Article

Transcriptional Regulation of Storage Protein Synthesis During Dicotyledon Seed Filling.

Published in:

Plant & Cell Physiology, 2008, v. 49, n. 9, p. 1263, doi. 10.1093/pcp/pcn116

By:

Jérôme Verdier;
Richard D. Thompson

Publication type:

Article

BASIC PENTACYSTEINE1 regulates ABI4 by modification of two histone marks H3K27me3 and H3ac during early seed development of Medicago truncatula.

Published in:

Frontiers in Plant Science, 2024, p. 1, doi. 10.3389/fpls.2024.1395379

By:

Thi Thu Dang;
Lalanne, David;
Vu, Joseph Ly;
Vu, Benoit Ly;
Defaye, Johan;
Verdier, Jerome;
Leprince, Olivier;
Buitink, Julia

Publication type:

Article

A gene expression atlas of the model legume Medicago truncatula.

Published in:

Plant Journal, 2008, v. 55, n. 3, p. 504, doi. 10.1111/j.1365-313X.2008.03519.x

By:

Benedito, Vagner A.;
Torres-Jerez, Ivone;
Murray, Jeremy D.;
Andriankaja, Andry;
Allen, Stacy;
Kakar, Klementina;
Wandrey, Maren;
Verdier, Jérôme;
Zuber, Hélène;
Ott, Thomas;
Moreau, Sandra;
Niebel, Andreas;
Frickey, Tancred;
Weiller, Georg;
Ji He;
Xinbin Dai;
Zhao, Patrick X.;
Yuhong Tang;
Udvardi, Michael K.

Publication type:

Article

Metabolic engineering of proanthocyanidin production by repressing the isoflavone pathways and redirecting anthocyanidin precursor flux in legume.

Published in:

Plant Biotechnology Journal, 2016, v. 14, n. 7, p. 1604, doi. 10.1111/pbi.12524

By:

Li, Penghui;
Dong, Qiang;
Ge, Shujun;
He, Xianzhi;
Verdier, Jerome;
Li, Dongqin;
Zhao, Jian

Publication type:

Article

Optimizing TILLING populations for reverse genetics in Medicago truncatula.

Published in:

Plant Biotechnology Journal, 2009, v. 7, n. 5, p. 430, doi. 10.1111/j.1467-7652.2009.00410.x

By:

Le Signor, Christine;
Savois, Vincent;
Aubert, Grégoire;
Verdier, Jérôme;
Nicolas, Marie;
Pagny, Gaelle;
Moussy, Françoise;
Sanchez, Myriam;
Baker, Dave;
Clarke, Jonathan;
Thompson, Richard

Publication type:

Article

Analysis of Large Seeds from Three Different Medicago truncatula Ecotypes Reveals a Potential Role of Hormonal Balance in Final Size Determination of Legume Grains.

Published in:

International Journal of Molecular Sciences, 2016, v. 17, n. 9, p. 1472, doi. 10.3390/ijms17091472

By:

Bandyopadhyay, Kaustav;
Uluçay, Orhan;
Şakiroğlu, Muhammet;
Udvardi, Michael K.;
Verdier, Jerome

Publication type:

Article

ITIS, a bioinformatics tool for accurate identification of transposon insertion sites using next-generation sequencing data.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0507-2

By:

Chuan Jiang;
Chao Chen;
Ziyue Huang;
Renyi Liu;
Verdier, Jerome

Publication type:

Article

ITIS, a bioinformatics tool for accurate identification of transposon insertion sites using next-generation sequencing data.

Published in:

BMC Bioinformatics, 2015, v. 16, n. 1, p. 1, doi. 10.1186/s12859-015-0507-2

By:

Chuan Jiang;
Chao Chen;
Ziyue Huang;
Renyi Liu;
Verdier, Jerome

Publication type:

Article

The re-establishment of desiccation tolerance in germinated tomato (Solanum lycopersicum) seeds.

Published in:

Seed Science Research, 2024, v. 34, n. 2, p. 77, doi. 10.1017/S0960258524000047

By:

Sano, Naoto;
Verdier, Jerome

Publication type:

Article

Gene expression atlas of pigeonpea and its application to gain insights into genes associated with pollen fertility implicated in seed formation.

Published in:

Journal of Experimental Botany, 2017, v. 68, n. 8, p. 2037, doi. 10.1093/jxb/erx010

By:

Pazhamala, Lekha T.;
Purohit, Shilp;
Saxena, Rachit K.;
Garg, Vanika;
Krishnamurthy, L.;
Verdier, Jerome;
Varshney, Rajeev K.

Publication type:

Article

A Regulatory Network-Based Approach Dissects Late Maturation Processes Related to the Acquisition of Desiccation Tolerance and Longevity of Medicago truncatula Seeds.

Published in:

Plant Physiology, 2013, v. 163, n. 2, p. 757, doi. 10.1104/pp.113.222380

By:

Verdier, Jerome;
Lalanne, David;
Pelletier, Sandra;
Torres-Jerez, Ivone;
Righetti, Karima;
Bandyopadhyay, Kaustav;
Leprince, Olivier;
Chatelain, Emilie;
Ly Vu, Benoit;
Gouzy, Jerome;
Gamas, Pascal;
Udvardi, Michael K.;
Buitink, Julia

Publication type:

Article

Gene expression profiling of M. truncatula transcription factors identifies putative regulators of grain legume seed filling.

Published in:

Plant Molecular Biology, 2008, v. 67, n. 6, p. 567, doi. 10.1007/s11103-008-9320-x

By:

Jérôme Verdier;
Klementina Kakar;
Karine Gallardo;
Christine Le Signor;
Grégoire Aubert;
Armin Schlereth;
Christopher Town;
Richard Thompson

Publication type:

Article

Dual Transcriptome of Post-Germinating Mutant Lines of Arabidopsis thaliana Infected by Alternaria brassicicola.

Published in:

Data (2306-5729), 2024, v. 9, n. 11, p. 137, doi. 10.3390/data9110137

By:

Ortega-Cuadros, Mailen;
Chir, Laurine;
Aligon, Sophie;
Velasquez, Nubia;
Arias, Tatiana;
Verdier, Jerome;
Grappin, Philippe

Publication type:

Article

LegumeGRN: A Gene Regulatory Network Prediction Server for Functional and Comparative Studies.

Published in:

PLoS ONE, 2013, v. 8, n. 7, p. 1, doi. 10.1371/journal.pone.0067434

By:

Wang, Mingyi;
Verdier, Jerome;
Benedito, Vagner A.;
Tang, Yuhong;
Murray, Jeremy D.;
Ge, Yinbing;
Becker, Jörg D.;
Carvalho, Helena;
Rogers, Christian;
Udvardi, Michael;
He, Ji

Publication type:

Article

Snapshot of epigenetic regulation in legumes.

Published in:

Legume Science, 2021, v. 3, n. 3, p. 1, doi. 10.1002/leg3.60

By:

Windels, David;
Dang, Thu Thi;
Chen, Zhijuan;
Verdier, Jerome

Publication type:

Article

Chromatin dynamics associated with seed desiccation tolerance/sensitivity at early germination in Medicago truncatula.

Published in:

Frontiers in Plant Science, 2022, v. 13, p. 1, doi. 10.3389/fpls.2022.1059493

By:

Naoto Sano;
Malabarba, Jaiana;
Zhijuan Chen;
Gaillard, Sylvain;
Windels, David;
Verdier, Jerome

Publication type:

Article

The genome of cowpea (Vigna unguiculata [L.] Walp.).

Published in:

Plant Journal, 2019, v. 98, n. 5, p. 767, doi. 10.1111/tpj.14349

By:

Lonardi, Stefano;
Muñoz‐Amatriaín, María;
Liang, Qihua;
Shu, Shengqiang;
Wanamaker, Steve I.;
Lo, Sassoum;
Tanskanen, Jaakko;
Schulman, Alan H.;
Zhu, Tingting;
Luo, Ming‐Cheng;
Alhakami, Hind;
Ounit, Rachid;
Hasan, Abid Md.;
Verdier, Jerome;
Roberts, Philip A.;
Santos, Jansen R.P.;
Ndeve, Arsenio;
Doležel, Jaroslav;
Vrána, Jan;
Hokin, Samuel A.

Publication type:

Article

The Vigna unguiculata Gene Expression Atlas (Vu GEA) from de novo assembly and quantification of RNA-seq data provides insights into seed maturation mechanisms.

Published in:

Plant Journal, 2016, v. 88, n. 2, p. 318, doi. 10.1111/tpj.13279

By:

Yao, Shaolun;
Jiang, Chuan;
Huang, Ziyue;
Torres‐Jerez, Ivone;
Chang, Junil;
Zhang, Heng;
Udvardi, Michael;
Liu, Renyi;
Verdier, Jerome

Publication type:

Article

DASH transcription factor impacts Medicago truncatula seed size by its action on embryo morphogenesis and auxin homeostasis.

Published in:

Plant Journal, 2015, v. 81, n. 3, p. 453, doi. 10.1111/tpj.12742

By:

Noguero, Mélanie;
Le Signor, Christine;
Vernoud, Vanessa;
Bandyopadhyay, Kaustav;
Sanchez, Myriam;
Fu, Chunxiang;
Torres‐Jerez, Ivone;
Wen, Jiangqi;
Mysore, Kirankumar S.;
Gallardo, Karine;
Udvardi, Michael;
Thompson, Richard;
Verdier, Jerome

Publication type:

Article

Establishment of the Lotus japonicus Gene Expression Atlas ( Lj GEA) and its use to explore legume seed maturation.

Published in:

Plant Journal, 2013, v. 74, n. 2, p. 351, doi. 10.1111/tpj.12119

By:

Verdier, Jerome;
Torres‐Jerez, Ivone;
Wang, Mingyi;
Andriankaja, Andry;
Allen, Stacy N.;
He, Ji;
Tang, Yuhong;
Murray, Jeremy D.;
Udvardi, Michael K.

Publication type:

Article

Regulation of DNA (de)Methylation Positively Impacts Seed Germination during Seed Development under Heat Stress.

Published in:

Genes, 2021, v. 12, n. 3, p. 457, doi. 10.3390/genes12030457

By:

Malabarba, Jaiana;
Windels, David;
Xu, Wenjia;
Verdier, Jerome;
Macovei, Anca

Publication type:

Article

Multichannel imaging for monitoring chemical composition and germination capacity of cowpea (Vigna unguiculata) seeds during development and maturation.

Published in:

Crop Journal (2095-5421), 2022, v. 10, n. 5, p. 1399, doi. 10.1016/j.cj.2021.04.010

By:

ElMasry, Gamal;
Mandour, Nasser;
Ejeez, Yahya;
Demilly, Didier;
Al-Rejaie, Salim;
Verdier, Jerome;
Belin, Etienne;
Rousseau, David

Publication type:

Article

A Snapshot of Functional Genetic Studies in Medicago truncatula.

Published in:

Frontiers in Plant Science, 2016, p. 1, doi. 10.3389/fpls.2016.01175

By:

Yun Kang;
Minguye Li;
Sinharoy, Senjuti;
Verdier, Jerome;
Mathesius, Ulrike;
Libault, Marc

Publication type:

Article

A combined histology and transcriptome analysis unravels novel questions on Medicago truncatula seed coat.

Published in:

Journal of Experimental Botany, 2013, v. 64, n. 2, p. 459, doi. 10.1093/jxb/ers304

By:

Verdier, Jerome;
Dessaint, Fabrice;
Schneider, Charles;
Abirached-Darmency, Mona

Publication type:

Article